genome.fa.s35.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  61  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12143487--12143551	20	3.2	20	86	0	85	21	30	30	16	1.96
12143653--12143766	11	10.9	11	78	15	84	6	0	7	85	0.72
12143665--12143765	1	101.0	1	79	0	94	4	0	6	88	0.64
12143773--12144136	81	4.5	81	89	4	556	38	21	17	22	1.93
12143773--12144136	40	9.0	39	86	8	464	38	21	17	22	1.93
12147782--12147842	15	3.6	17	80	10	72	65	0	14	19	1.27
12147783--12147842	17	3.6	16	84	13	77	66	0	15	18	1.25
12147815--12147858	18	2.3	18	84	7	52	70	0	18	11	1.16
12148995--12149126	24	5.5	24	88	1	194	41	3	14	40	1.64
12149585--12149624	15	2.7	15	92	0	62	35	15	12	37	1.85
12149787--12149862	17	4.6	17	77	6	68	38	15	11	34	1.84
12149804--12149883	17	4.8	16	79	11	72	41	11	12	35	1.79
12149787--12149883	33	3.0	32	80	10	90	40	12	12	35	1.80
12149854--12149904	26	1.9	27	88	11	79	37	5	13	43	1.69
12150460--12150495	16	2.3	16	95	4	65	75	11	8	5	1.19
12152597--12152684	39	2.3	39	92	2	142	43	14	0	42	1.46
12154418--12154446	15	2.0	15	93	6	51	55	0	0	44	0.99
12154861--12154885	2	12.5	2	100	0	50	0	52	0	48	1.00
12159635--12159685	24	2.1	24	89	7	77	37	7	11	43	1.71
12170596--12170634	8	4.6	8	93	6	60	71	0	0	28	0.86
12170602--12170635	3	12.0	3	87	12	54	70	0	0	29	0.87
12170602--12170635	11	3.0	12	87	12	54	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12170759--12170812	19	2.6	21	77	16	60	75	5	0	18	0.98
12170768--12170811	19	2.2	19	88	12	61	75	6	0	18	1.02
12173350--12173439	21	4.1	22	75	14	71	43	16	4	35	1.68
12173359--12173449	44	2.1	44	85	0	119	43	15	5	35	1.70
12174736--12174787	24	2.2	24	86	6	70	3	25	0	71	1.03
12177683--12177720	18	2.2	17	90	4	58	68	5	5	21	1.29
12178464--12178536	39	1.9	37	81	15	87	31	9	15	43	1.78
12179087--12179147	28	2.2	28	90	0	104	45	22	4	26	1.72
12179570--12179595	4	6.5	4	100	0	52	53	0	0	46	1.00
12181024--12181067	22	2.0	22	86	8	63	56	2	0	40	1.11
12182050--12182077	7	4.0	7	100	0	56	42	0	0	57	0.99
12185291--12185456	61	2.7	61	75	5	183	42	4	15	37	1.68
12185793--12185842	26	1.9	26	88	8	75	38	0	10	52	1.35
12185796--12185850	26	2.1	28	83	12	73	41	0	7	50	1.30
12186063--12186113	15	3.4	14	75	15	57	17	47	3	31	1.66
12188398--12188557	62	2.6	61	81	5	162	41	3	13	42	1.59
12188637--12188705	31	2.1	34	84	7	90	42	2	14	40	1.61
12197624--12198735	355	3.1	353	84	3	1392	37	13	12	37	1.82
12200305--12200426	63	1.9	63	96	0	226	28	11	15	44	1.81
12205075--12205132	23	2.5	24	78	18	68	51	5	0	43	1.24
12205097--12205146	24	2.0	25	88	11	75	54	0	0	46	1.00
12205097--12205150	23	2.2	24	83	6	65	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12206698--12206744	24	2.0	24	87	8	69	42	6	10	40	1.65
12208722--12208756	2	18.0	2	94	5	63	48	0	51	0	1.00
12213221--12213248	13	2.2	13	100	0	56	39	7	39	14	1.73
12217345--12217418	25	3.1	23	88	7	80	54	0	4	41	1.19
12217361--12217418	25	2.4	25	97	2	109	56	0	3	39	1.16
12227544--12227681	69	2.0	69	92	0	231	32	31	14	21	1.93
12227652--12228123	243	1.9	243	84	1	624	27	27	17	27	1.98
12230772--12230802	16	1.9	16	93	0	53	35	3	19	41	1.67
12250372--12250518	58	2.5	58	81	8	158	54	0	4	40	1.24
12250403--12250517	28	4.0	28	76	10	108	57	0	3	38	1.22
12251917--12251941	12	2.1	12	100	0	50	68	0	8	24	1.16
12251931--12251960	15	2.0	15	93	0	51	76	0	0	23	0.78
12252302--12252339	20	1.9	19	94	5	67	26	5	13	55	1.59
12252306--12252356	10	5.0	10	79	11	59	29	9	9	50	1.67
12252751--12252850	3	33.3	3	89	0	92	55	0	11	34	1.35
12253194--12253340	65	2.3	65	79	1	161	47	13	20	18	1.82
12253239--12253432	65	3.0	64	77	8	171	46	16	20	16	1.84
12265441--12265474	17	2.1	17	89	10	54	5	8	20	64	1.43
12266336--12266368	14	2.4	14	90	5	50	3	0	9	87	0.63
12270823--12270919	8	12.1	8	80	9	101	73	1	15	10	1.15
12270835--12270898	23	2.8	24	86	13	98	76	0	14	9	1.01
12270832--12270914	31	2.7	31	80	16	93	75	1	13	9	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12270841--12270919	15	5.1	15	82	13	90	73	1	13	11	1.16
12270841--12270919	23	3.4	22	83	13	72	73	1	13	11	1.16
12271628--12271810	63	2.9	63	80	0	204	37	10	22	29	1.88
12271720--12271841	63	1.9	63	85	3	165	40	9	21	28	1.85
12272204--12272380	21	8.3	21	84	3	219	37	9	15	37	1.79
12272857--12273125	41	6.5	41	82	4	317	23	13	20	42	1.87
12273376--12273431	26	2.3	23	75	18	60	19	3	3	73	1.13
12274376--12274431	24	2.2	25	84	6	69	44	5	8	41	1.58
12275471--12275565	47	2.0	47	100	0	190	14	16	10	57	1.64
12275753--12275804	3	17.7	3	96	4	97	67	0	0	32	0.91
12276478--12276524	22	2.0	23	88	8	69	10	6	14	68	1.38
12276139--12276897	382	2.0	389	83	5	988	19	8	15	56	1.64
12286324--12286420	49	2.0	49	93	0	167	39	3	14	43	1.61
12292705--12292805	28	3.6	28	72	10	82	24	10	15	48	1.77
12293666--12293804	68	2.0	68	98	0	269	48	19	7	25	1.74
12296150--12296178	2	14.5	2	100	0	58	51	0	0	48	1.00
12296699--12296767	30	2.3	31	79	2	77	47	8	5	37	1.58
12298900--12298953	22	2.6	20	82	5	63	50	1	7	40	1.41
12305361--12305408	19	2.6	18	84	12	62	27	2	2	68	1.11
12305361--12305409	6	8.0	6	78	13	55	28	2	2	67	1.13
12306453--12306483	2	15.5	2	100	0	62	0	48	0	51	1.00
12306483--12306507	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12306900--12306959	29	2.1	29	87	0	84	48	1	0	50	1.11
12307522--12307555	17	2.0	17	94	0	59	55	0	0	44	0.99
12312243--12312281	20	2.0	20	85	10	53	12	28	20	38	1.89
12314845--12314883	21	1.9	20	85	15	53	58	2	2	35	1.25
12318706--12318799	29	3.1	30	79	10	104	59	0	3	37	1.13
12319317--12319376	27	2.3	27	80	8	70	55	0	0	45	0.99
12319442--12319481	18	2.2	18	90	0	62	37	0	2	60	1.11
12319983--12320052	27	2.7	27	79	18	69	64	2	2	30	1.22
12320010--12320074	27	2.5	26	82	7	78	64	3	3	29	1.23
12320015--12320072	27	2.1	27	87	0	80	65	3	3	27	1.25
12332471--12332549	37	2.2	36	84	11	99	34	2	11	51	1.51
12339458--12339556	16	6.2	16	73	9	85	51	4	3	41	1.36
12341295--12341347	12	4.4	12	80	17	58	39	0	9	50	1.35
12341311--12341338	6	4.7	6	100	0	56	35	0	14	50	1.43
12342083--12342168	35	2.4	36	84	9	124	39	3	6	50	1.47
12345585--12345620	19	1.9	18	88	5	54	58	0	0	41	0.98
12345935--12346038	50	2.1	51	87	1	147	13	24	25	37	1.91
12356213--12356278	29	2.3	29	85	10	84	33	0	4	62	1.16
12363921--12363976	26	2.2	26	100	0	112	26	21	10	41	1.86
12366938--12366979	19	2.1	21	86	8	61	21	2	7	69	1.25
12366962--12366994	14	2.4	14	95	5	59	15	0	6	78	0.93
12368145--12368198	19	3.1	17	80	12	65	7	0	12	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12368141--12368198	29	2.0	28	86	3	80	12	0	13	74	1.08
12368576--12368638	3	21.0	3	100	0	126	66	0	0	33	0.92
12370505--12370542	14	2.7	14	92	8	60	44	5	0	50	1.24
12372992--12373055	3	22.0	3	73	17	55	65	3	1	29	1.17
12372992--12373044	20	2.7	20	73	5	54	66	3	1	28	1.20
12373029--12373087	5	12.2	5	78	7	50	57	6	0	35	1.25
12373045--12373087	15	2.9	15	82	0	59	51	9	0	39	1.34
12375074--12375106	2	16.5	2	100	0	66	48	0	0	51	1.00
12377579--12377611	17	2.0	17	88	5	50	21	6	15	57	1.59
12379680--12379735	27	2.1	27	100	0	112	46	10	10	32	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109