genome.fa.s35.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  33  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5207517--5208003	176	2.8	173	77	9	450	16	15	16	51	1.76
5207700--5208026	106	3.1	106	78	10	305	16	15	15	51	1.76
5207552--5208109	35	15.9	34	75	8	318	17	16	15	51	1.77
5207871--5208096	107	2.1	106	79	5	235	16	16	15	50	1.78
5207819--5208126	142	2.2	140	79	5	325	17	16	14	50	1.78
5208162--5208440	35	7.9	34	71	12	161	17	21	11	49	1.78
5208162--5208343	71	2.6	71	78	8	187	17	20	12	49	1.78
5208495--5208530	17	2.1	17	89	5	54	11	16	11	61	1.57
5208507--5209207	35	19.9	35	73	8	278	18	17	13	50	1.79
5208506--5208681	71	2.5	71	80	12	202	17	19	13	49	1.79
5208507--5209265	70	10.8	70	72	9	359	18	16	13	50	1.78
5208507--5209383	106	8.3	107	73	10	341	18	17	13	50	1.77
5208507--5209398	70	12.7	70	70	10	317	18	17	13	50	1.77
5209295--5209449	70	2.2	70	82	1	175	21	16	9	51	1.73
5208509--5209398	35	25.3	35	71	11	277	18	17	13	51	1.77
5209479--5210199	35	20.9	34	69	15	292	17	17	13	51	1.76
5209482--5209855	106	3.5	105	76	6	376	16	15	15	52	1.74
5209809--5209948	66	2.1	66	80	6	149	20	17	10	51	1.75
5209996--5210094	34	2.8	35	80	14	107	17	20	12	50	1.77
5209802--5210473	369	1.8	370	80	7	828	18	19	12	49	1.78
5210332--5210466	35	3.8	35	75	13	132	17	18	13	51	1.77
5210549--5210696	71	2.1	70	81	6	165	19	18	12	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210504--5210699	106	1.8	106	81	6	245	19	19	13	47	1.82
5210504--5211107	35	17.1	35	72	9	255	20	17	13	49	1.79
5210760--5211154	105	3.7	105	72	12	270	20	16	12	49	1.79
5210734--5211173	105	4.2	105	72	11	263	20	17	12	49	1.78
5210504--5211236	35	20.9	35	69	9	116	19	17	13	49	1.79
5211267--5211310	20	2.1	21	83	4	54	15	13	13	56	1.67
5211286--5211793	35	14.5	34	68	12	138	19	15	13	51	1.76
5211318--5211499	69	2.6	70	75	7	174	19	16	12	52	1.74
5211318--5211909	70	8.4	70	71	10	207	19	15	13	51	1.76
5211538--5211840	105	2.9	105	76	8	244	20	16	12	50	1.77
5211638--5211909	35	7.8	35	72	10	171	17	16	13	53	1.73
5211646--5211875	105	2.2	105	78	4	250	17	16	13	52	1.75
5211684--5211944	140	1.9	140	80	6	314	17	16	14	52	1.76
5211973--5212305	35	9.4	35	77	7	246	16	16	13	52	1.74
5211974--5212284	106	2.9	103	76	6	302	16	16	14	52	1.76
5211974--5212294	141	2.3	140	78	6	333	16	16	14	52	1.75
5212185--5212305	36	3.4	36	81	5	104	19	16	10	53	1.71
5212496--5212599	33	3.2	33	75	14	99	22	16	12	49	1.79
5212515--5212599	33	2.6	33	80	9	102	20	16	14	49	1.79
5212783--5213163	106	3.6	104	75	8	324	19	18	13	49	1.80
5212779--5213586	35	23.0	35	70	11	323	19	17	13	49	1.79
5212780--5213189	141	2.9	139	74	12	370	19	18	12	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5212874--5213268	211	1.9	211	80	7	462	20	17	13	48	1.80
5213349--5213482	72	1.9	71	82	4	171	21	14	13	50	1.78
5213451--5213517	34	1.9	35	87	3	100	19	17	11	50	1.77
5213395--5213627	105	2.2	103	79	7	263	19	18	12	50	1.78
5213735--5213782	21	2.3	21	85	0	60	16	10	10	62	1.53
5213824--5214067	106	2.3	105	80	4	267	17	16	15	51	1.77
5213789--5214065	141	2.0	140	82	4	333	18	16	14	50	1.77
5213789--5218504	35	134.4	35	70	9	1314	18	16	13	51	1.76
5214703--5214784	28	2.9	28	72	1	74	17	18	9	54	1.69
5214745--5215000	107	2.4	105	81	6	268	19	17	11	50	1.76
5215169--5215434	107	2.5	106	75	11	263	21	15	11	51	1.74
5215579--5215878	141	2.1	141	77	3	300	18	13	14	53	1.73
5215698--5217261	141	11.1	137	71	14	518	17	15	14	52	1.76
5215617--5216957	353	3.8	353	92	2	2144	18	15	14	51	1.76
5216122--5216498	207	1.8	207	81	7	480	18	14	14	53	1.73
5216471--5217274	318	2.5	317	90	3	1208	18	15	14	51	1.76
5215617--5217435	353	5.2	353	89	3	2099	17	15	14	52	1.75
5215677--5217453	141	12.6	137	70	13	469	17	15	14	52	1.76
5217466--5217648	72	2.6	70	80	3	197	15	18	13	52	1.75
5217230--5217648	142	2.9	141	78	5	326	15	16	15	52	1.75
5217666--5217947	106	2.7	104	77	7	248	19	20	10	49	1.77
5218037--5218518	211	2.3	210	79	7	505	19	16	12	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5218032--5218824	70	11.3	69	70	9	315	19	15	12	51	1.76
5218886--5218963	35	2.2	35	84	4	95	17	14	10	57	1.64
5218984--5219030	21	2.2	21	92	0	76	17	14	10	57	1.65
5219076--5219616	71	7.7	71	72	11	299	15	17	15	51	1.77
5219006--5219599	35	16.8	35	75	8	305	15	17	15	50	1.78
5219005--5219833	35	23.8	35	72	10	261	16	18	14	51	1.77
5219740--5219848	35	3.1	33	75	10	110	16	18	13	51	1.77
5220875--5254482	35	968.8	34	69	9	1361	50	13	17	18	1.78
5221833--5221925	33	2.7	33	83	6	105	49	12	15	22	1.78
5222006--5222411	141	2.9	139	76	6	320	51	14	17	17	1.77
5222266--5222564	106	2.8	107	78	8	263	52	13	15	18	1.75
5222852--5223026	71	2.5	71	80	7	196	52	13	16	17	1.76
5222890--5223184	164	1.8	162	83	6	389	51	13	17	16	1.76
5225290--5225380	36	2.6	35	87	1	119	52	15	15	16	1.75
5225547--5225866	141	2.3	140	81	7	389	51	14	16	16	1.77
5225502--5225995	211	2.3	210	79	6	491	51	14	16	17	1.77
5227199--5227454	142	1.8	141	83	2	343	48	14	19	18	1.81
5227210--5322872	35	2756.9	34	68	12	7971	50	13	17	18	1.78
5229367--5229783	177	2.4	177	79	4	423	51	14	16	17	1.77
5231980--5232386	71	5.8	70	72	5	185	50	13	15	19	1.77
5231163--5232676	106	14.4	105	71	10	350	50	14	17	17	1.78
5232329--5232584	139	1.8	138	80	5	300	49	14	17	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5232756--5233007	139	1.8	139	80	6	305	49	12	21	17	1.78
5233112--5258710	141	184.0	139	67	14	646	50	13	17	18	1.78
5237065--5237622	212	2.6	210	79	7	574	51	15	16	16	1.76
5237044--5237624	247	2.4	248	80	4	620	51	14	16	17	1.76
5238102--5238285	69	2.6	70	79	5	194	52	11	17	18	1.75
5238730--5239917	211	5.6	210	71	10	529	51	14	16	18	1.77
5240043--5240258	68	3.2	69	78	10	203	50	14	18	16	1.79
5241757--5242083	177	1.8	177	82	0	411	49	14	17	18	1.79
5241758--5242137	177	2.1	177	79	1	395	50	14	16	18	1.78
5243281--5243535	106	2.4	106	78	3	244	50	14	16	18	1.79
5243512--5243599	41	2.1	41	85	4	115	52	9	19	19	1.72
5244898--5245513	106	5.8	106	72	6	343	49	14	17	17	1.79
5245103--5245513	212	1.9	211	81	2	493	51	15	16	17	1.77
5245796--5245929	72	1.9	71	84	1	178	52	14	14	19	1.75
5246473--5246508	17	2.1	18	94	5	65	63	11	13	11	1.51
5247063--5247481	106	4.0	105	73	13	267	52	14	16	15	1.75
5252130--5252209	33	2.4	34	85	10	110	56	20	11	12	1.66
5252311--5252500	71	2.7	68	77	9	195	53	15	15	15	1.74
5252809--5253065	71	3.6	72	73	10	174	52	13	14	19	1.75
5254066--5254446	177	2.2	176	82	5	457	51	14	16	17	1.77
5254065--5254481	106	3.9	106	74	5	256	51	15	16	17	1.77
5255264--5255731	106	4.4	106	75	5	300	51	15	17	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5255280--5255805	71	7.4	71	69	10	245	51	15	17	16	1.77
5256414--5256518	55	1.9	55	82	0	129	50	11	19	19	1.77
5256832--5257978	71	16.4	70	68	11	205	50	13	17	18	1.78
5257163--5257696	212	2.5	212	78	8	523	50	13	17	17	1.77
5257092--5257678	106	5.5	106	72	9	374	49	13	17	18	1.79
5257256--5257870	176	3.5	174	77	6	458	51	13	16	18	1.76
5257423--5257942	176	3.0	173	75	5	452	51	13	15	19	1.76
5257791--5257977	69	2.7	70	78	4	162	52	11	14	21	1.73
5258121--5258663	247	2.2	244	77	3	561	51	15	16	17	1.77
5260173--5260423	134	1.9	134	81	7	312	49	13	20	16	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109