genome.fa.s35.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  9  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1441578--1441705	35	3.5	36	73	17	104	44	11	20	23	1.84
1441548--1441754	109	1.9	109	80	6	242	47	12	18	21	1.80
1442190--1442223	14	2.3	15	90	5	52	5	14	0	79	0.91
1452413--1452445	16	2.1	16	88	11	50	33	0	3	63	1.10
1454794--1454901	48	2.2	48	95	0	189	34	7	25	33	1.84
1458153--1458200	22	2.2	21	77	3	51	35	16	16	31	1.92
1459727--1459807	21	3.8	21	73	3	72	32	16	17	34	1.92
1461129--1461167	12	3.2	12	88	3	60	23	0	46	30	1.53
1467211--1467291	21	3.8	21	80	3	90	30	17	18	33	1.94
1467236--1467288	22	2.5	22	90	3	81	26	20	16	35	1.94
1468098--1468126	12	2.3	13	88	11	51	31	0	34	34	1.58
1472203--1472227	12	2.1	12	100	0	50	16	0	40	44	1.47
1474028--1474401	187	2.0	187	93	0	640	30	18	18	32	1.95
1485462--1485517	22	2.6	21	86	5	76	37	17	17	26	1.93
1485660--1485691	16	2.0	16	100	0	64	37	31	0	31	1.58
1491748--1491792	12	3.7	12	96	3	81	35	42	0	22	1.54
1500301--1500383	21	3.9	21	73	3	67	31	16	18	33	1.93
1500337--1500378	22	1.9	22	90	0	66	26	16	21	35	1.94
1512527--1512584	22	2.7	21	81	5	71	34	15	20	29	1.94
1512528--1512605	21	3.7	21	81	3	84	34	16	17	30	1.93
1513169--1513471	150	2.0	150	87	1	437	29	21	18	30	1.97
1525457--1525513	24	2.3	24	81	6	69	38	7	5	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1526328--1526357	12	2.4	13	88	11	53	60	6	0	33	1.23
1534381--1534455	11	6.5	11	72	7	51	58	12	2	26	1.47
1539084--1539164	21	3.6	22	75	9	67	49	0	0	50	1.00
1539104--1539157	23	2.4	22	79	11	56	46	0	0	53	1.00
1542499--1542530	16	2.0	16	93	0	55	34	6	0	59	1.23
1543657--1543737	39	2.1	39	97	0	153	38	23	8	29	1.85
1544012--1544051	9	4.6	9	84	6	55	10	2	0	87	0.63
1544012--1544055	17	2.8	16	86	10	63	11	2	0	86	0.66
1544098--1544319	42	5.4	42	82	3	236	42	18	12	26	1.85
1544098--1544319	83	2.7	84	84	5	283	42	18	12	26	1.85
1544517--1544721	109	1.9	111	81	6	256	34	16	12	36	1.87
1544673--1544786	59	1.9	58	89	1	174	32	16	13	37	1.87
1545976--1546044	11	5.9	11	83	11	75	4	8	0	86	0.68
1545980--1546034	1	55.0	1	83	0	65	3	5	0	90	0.53
1545983--1546047	9	7.1	9	84	7	69	6	9	0	84	0.77
1546396--1546441	24	2.0	23	87	12	67	4	13	2	80	0.95
1550039--1550569	60	8.8	60	88	6	720	36	8	5	49	1.55
1550039--1550569	181	2.9	181	88	5	768	36	8	5	49	1.55
1550665--1550708	3	14.7	3	100	0	88	68	0	0	31	0.90
1553164--1553198	10	3.7	9	88	11	52	71	0	28	0	0.86
1554544--1554611	16	4.2	16	74	9	57	17	1	7	73	1.13
1554929--1554977	19	2.5	19	83	9	64	22	6	0	71	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1555202--1555256	26	2.1	27	89	3	85	76	9	1	12	1.10
1555645--1555673	12	2.4	12	100	0	58	55	0	0	44	0.99
1556228--1556257	4	7.5	4	100	0	60	50	0	0	50	1.00
1556254--1556289	3	12.0	3	100	0	72	66	0	0	33	0.92
1560769--1560817	24	2.0	24	96	0	89	24	10	16	48	1.76
1562023--1562053	2	15.5	2	100	0	62	48	0	0	51	1.00
1571842--1571907	33	2.0	33	90	0	105	57	6	6	30	1.47
1572972--1573120	62	2.4	63	96	2	282	34	24	17	24	1.96
1575681--1575725	16	2.8	16	87	12	58	75	0	4	20	0.97
1576960--1577008	21	2.5	20	81	12	57	65	18	0	16	1.28
1578238--1578278	21	1.9	22	85	5	57	75	7	7	9	1.18
1578389--1578413	11	2.3	11	100	0	50	48	8	0	44	1.32
1580284--1580310	7	3.9	7	100	0	54	25	0	0	74	0.83
1580392--1580426	10	3.5	10	85	14	54	68	0	0	31	0.90
1587442--1587482	20	2.0	20	86	9	57	53	0	2	43	1.13
1587532--1587630	43	2.3	41	77	14	101	50	1	3	45	1.23
1588828--1588895	21	3.1	21	83	6	82	54	0	0	45	0.99
1588865--1588897	8	4.2	8	88	3	50	60	0	0	39	0.97
1588869--1588919	26	2.0	26	84	0	66	64	0	1	33	1.05
1589604--1589642	13	2.9	14	80	7	53	61	5	2	30	1.31
1598551--1598585	15	2.3	15	90	0	52	65	20	2	11	1.37
1598557--1598605	12	4.1	12	83	0	62	59	24	2	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600848--1600873	2	13.0	2	100	0	52	50	0	0	50	1.00
1604825--1604869	22	2.0	22	82	0	54	33	4	0	62	1.15
1604850--1604901	21	2.4	22	77	6	61	36	1	3	57	1.28
1605872--1605911	17	2.5	16	88	8	55	2	0	12	85	0.71
1605874--1605911	15	2.5	15	84	12	51	2	0	10	86	0.66
1606302--1606438	47	3.1	43	77	7	114	40	14	13	31	1.84
1606362--1606875	50	10.7	48	79	10	446	40	19	11	28	1.87
1606362--1606834	97	4.9	96	79	10	477	39	19	12	28	1.88
1606549--1606625	40	1.9	40	86	5	111	41	19	10	28	1.84
1606502--1606673	90	1.9	90	88	4	258	39	19	12	28	1.88
1607662--1607694	17	1.9	17	100	0	66	18	3	0	78	0.87
1618156--1618211	26	2.2	26	96	0	103	30	8	32	28	1.88
1619443--1619505	27	2.3	28	78	10	69	38	14	3	44	1.61
1619548--1619592	22	2.0	22	82	0	54	33	4	0	62	1.15
1620686--1620722	18	2.1	18	94	0	65	62	13	13	10	1.55
1620860--1620891	14	2.2	15	94	5	57	90	0	6	3	0.53
1635181--1635389	69	2.9	70	80	7	217	48	5	5	40	1.48
1636164--1636234	36	2.0	36	91	0	115	39	2	12	45	1.57
1636275--1636299	11	2.3	11	100	0	50	52	0	0	48	1.00
1636934--1636982	20	2.5	19	76	6	53	34	4	4	57	1.37
1641384--1641424	21	1.9	22	90	0	57	41	4	14	39	1.67
1642297--1642371	13	5.6	14	79	16	70	73	4	0	22	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642301--1642369	25	2.9	24	83	12	88	72	4	0	23	1.02
1642287--1642371	9	9.6	9	74	21	56	72	4	0	22	1.02
1642314--1642370	26	2.2	26	90	6	89	75	3	0	21	0.95
1642324--1642373	10	5.2	9	79	11	55	80	2	0	18	0.82
1643228--1643377	80	1.9	81	80	6	180	43	4	8	44	1.52
1644422--1644459	19	2.0	19	100	0	76	42	21	5	31	1.75
1650815--1650869	16	3.6	16	75	9	60	20	3	27	49	1.65
1650813--1650869	30	1.9	30	88	0	87	19	3	29	47	1.66
1651288--1651344	18	3.0	20	75	15	66	70	5	0	24	1.08
1651602--1651660	28	2.1	28	87	6	84	23	23	18	33	1.97
1652312--1652364	19	2.7	19	82	2	70	13	0	11	75	1.05
1653746--1653791	3	15.3	3	100	0	92	32	0	0	67	0.91
1656271--1656358	28	3.0	30	86	5	101	34	2	0	63	1.07
1656282--1656358	28	2.7	29	89	4	111	36	2	0	61	1.10
1656380--1656490	30	3.8	30	79	8	111	49	0	9	40	1.40
1656400--1656478	28	2.8	27	82	7	86	51	0	7	40	1.30
1656473--1656526	27	2.0	27	88	0	81	62	1	0	35	1.06
1658038--1658128	33	2.8	33	79	0	110	41	16	12	29	1.84
1658034--1658145	33	3.4	33	76	6	86	41	17	11	29	1.85
1658370--1658409	19	2.0	20	90	4	64	72	2	0	25	0.97
1660077--1660136	23	2.5	24	78	5	77	56	3	3	36	1.32
1660934--1661008	6	12.5	6	76	5	53	58	6	4	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1660901--1660979	24	3.5	24	78	11	69	59	3	5	31	1.37
1664482--1664519	7	5.6	7	82	17	53	10	10	0	78	0.95
1664489--1664531	12	3.5	12	82	14	52	6	13	0	79	0.93
1664481--1664531	25	2.0	25	88	7	75	7	13	0	78	0.96
1664476--1664524	19	2.5	20	93	6	82	10	10	0	79	0.93
1665335--1665380	22	2.1	22	84	4	58	32	0	0	67	0.91
1665847--1665879	17	1.9	17	93	0	57	60	6	0	33	1.21
1666909--1666947	2	21.0	2	85	15	57	51	0	0	48	1.00
1670979--1671038	23	2.5	24	81	5	86	55	3	5	36	1.38
1671581--1671614	11	3.2	11	91	4	52	17	0	20	61	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109