genome.fa.s35.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  32  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5183439--5184149	106	6.7	105	70	12	327	18	17	13	51	1.77
5184856--5185036	35	5.1	36	74	10	106	16	19	11	51	1.74
5185118--5185480	70	5.1	69	74	14	246	18	17	13	50	1.78
5184686--5185382	372	1.9	374	81	6	869	17	19	12	50	1.77
5185113--5185451	35	9.6	35	72	14	207	18	17	14	49	1.79
5185457--5185510	28	1.9	28	84	0	72	16	14	9	59	1.60
5185764--5186465	35	19.9	35	72	8	334	18	17	13	50	1.77
5184956--5186204	648	1.9	652	90	1	2017	18	17	13	50	1.78
5185764--5186147	176	2.2	175	79	6	400	18	17	13	50	1.78
5185768--5186169	141	2.9	140	72	13	338	18	17	12	50	1.77
5185765--5186653	35	25.3	35	69	12	327	18	16	13	52	1.75
5186680--5186730	21	2.5	20	84	12	68	13	9	9	66	1.44
5186701--5187238	35	15.3	35	76	7	322	16	15	14	52	1.74
5186737--5187562	35	23.8	35	72	9	293	17	17	13	51	1.77
5187224--5187403	94	1.9	94	82	6	222	18	20	10	51	1.75
5187691--5188069	35	10.6	35	72	11	162	19	17	12	50	1.78
5187807--5188151	35	9.8	35	72	7	110	20	17	12	50	1.77
5188520--5188622	36	2.9	35	81	4	109	18	11	13	56	1.67
5187884--5188622	35	21.0	35	68	10	204	18	16	13	51	1.76
5188649--5188695	21	2.2	21	84	0	58	14	12	12	59	1.61
5188703--5189245	35	15.6	35	74	10	290	18	14	13	52	1.74
5188811--5189187	205	1.8	206	83	6	496	18	14	14	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5189424--5189526	35	2.9	35	72	7	102	17	20	14	47	1.82
5189696--5189828	35	3.8	35	73	7	117	21	18	9	51	1.74
5189570--5189806	126	1.9	125	81	8	284	19	20	9	50	1.76
5189908--5190030	36	3.5	34	73	13	95	20	13	13	53	1.71
5189908--5190041	72	1.9	71	84	1	178	20	13	13	52	1.74
5189872--5190135	35	7.5	35	74	6	158	18	14	14	53	1.74
5189867--5190135	107	2.5	107	81	4	294	18	14	15	52	1.75
5189696--5190242	71	7.7	71	70	11	216	18	16	12	52	1.75
5189908--5190268	141	2.6	139	79	6	345	18	14	13	54	1.72
5190295--5190342	21	2.3	21	92	0	78	16	10	10	62	1.53
5190349--5191870	35	43.3	35	67	15	387	18	17	13	50	1.78
5190455--5190828	205	1.8	205	80	4	459	18	16	14	50	1.78
5191335--5191985	70	9.3	69	72	9	324	18	17	13	50	1.79
5191373--5192099	106	7.0	105	71	11	415	18	16	13	50	1.78
5191458--5191612	68	2.2	69	84	6	199	17	16	15	50	1.78
5191379--5191703	174	1.9	173	81	8	401	18	17	13	49	1.79
5191863--5191957	35	2.7	35	76	9	95	17	13	16	51	1.76
5192077--5192155	35	2.2	35	81	2	95	16	13	11	58	1.64
5192176--5192222	21	2.2	21	88	0	67	17	12	10	59	1.60
5192198--5192820	35	17.8	36	72	12	273	17	16	15	51	1.77
5192233--5192764	71	7.6	69	70	14	224	17	15	15	52	1.75
5192288--5192747	241	1.9	240	79	6	518	16	14	16	52	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5192262--5192711	205	2.2	206	78	7	457	17	14	16	51	1.76
5192621--5192764	72	2.0	71	86	1	198	17	16	13	52	1.76
5192586--5192789	107	1.9	105	82	5	250	17	17	15	50	1.79
5192850--5193001	35	4.3	35	73	13	107	19	19	9	51	1.73
5192882--5193001	36	3.4	35	73	12	93	18	20	9	52	1.72
5193016--5193179	35	4.7	35	74	8	136	15	20	16	47	1.83
5193295--5193330	17	2.1	18	89	5	56	13	11	11	63	1.51
5193307--5194724	35	40.5	35	71	10	535	18	16	13	51	1.77
5193307--5193676	71	5.3	70	72	12	226	19	16	12	51	1.76
5193309--5193678	106	3.5	104	75	8	295	19	16	12	51	1.76
5193759--5194003	71	3.5	70	78	3	206	20	15	13	50	1.77
5194220--5194388	69	2.4	69	81	13	202	20	15	14	50	1.78
5194758--5195157	35	11.7	35	68	16	178	17	19	12	51	1.76
5194680--5195034	165	2.2	164	91	2	577	17	19	11	51	1.76
5194936--5195202	35	7.5	35	70	14	120	16	20	11	50	1.77
5195267--5195754	35	13.9	35	77	6	335	18	17	13	49	1.79
5195270--5195654	176	2.2	176	77	7	397	17	17	14	50	1.79
5195268--5195708	141	3.2	140	74	10	391	17	17	14	50	1.78
5195266--5196175	35	26.0	35	71	12	327	18	16	13	51	1.76
5196218--5196264	21	2.2	21	88	0	67	14	14	10	59	1.61
5196272--5196840	35	16.2	35	75	7	339	17	17	14	50	1.78
5196240--5196840	70	8.6	70	74	8	409	17	17	14	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5196346--5196406	32	1.9	31	90	6	95	11	9	14	63	1.51
5196272--5196546	138	2.0	140	83	5	351	17	15	14	52	1.75
5196844--5196887	17	2.6	17	100	0	88	11	11	9	68	1.40
5196910--5197013	36	2.9	35	73	8	102	18	18	11	51	1.75
5196878--5197175	35	8.5	35	71	10	142	18	18	11	50	1.77
5197244--5197988	35	21.0	35	71	8	245	19	17	13	49	1.79
5197678--5197942	106	2.5	106	77	10	245	20	16	13	50	1.77
5197850--5198092	105	2.3	107	77	9	250	18	16	12	51	1.75
5198226--5200053	35	52.5	35	66	15	326	18	17	13	50	1.77
5198259--5198536	141	2.0	141	83	4	355	17	15	14	52	1.75
5198367--5198740	204	1.8	204	82	3	475	17	15	16	51	1.77
5198909--5199009	36	2.9	36	76	8	100	19	16	12	50	1.77
5200215--5200255	21	2.0	21	85	0	55	14	9	12	63	1.52
5200229--5202055	35	52.8	35	68	13	500	18	17	13	50	1.78
5200229--5200505	141	2.0	141	82	5	337	16	15	14	53	1.74
5200260--5200504	106	2.3	105	79	6	248	17	15	15	51	1.76
5200320--5200708	204	1.9	205	82	4	482	16	16	16	49	1.79
5201218--5202178	35	27.3	35	71	10	458	18	16	13	51	1.77
5202262--5202692	106	4.2	103	72	8	311	16	13	15	54	1.72
5202227--5202535	141	2.2	140	78	3	307	17	13	14	54	1.71
5202227--5202776	71	7.9	69	71	10	255	16	14	15	54	1.72
5202317--5202775	240	1.9	241	79	5	516	16	13	16	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5202226--5202846	35	17.8	35	72	10	279	18	14	14	52	1.75
5202900--5203011	35	3.2	34	74	9	100	18	21	11	48	1.80
5203055--5203267	35	6.1	35	70	5	133	17	18	12	51	1.75
5202963--5203133	88	1.9	88	89	1	261	17	18	15	48	1.81
5203335--5204159	35	23.4	35	72	10	277	18	16	12	51	1.75
5203336--5204855	106	14.5	106	69	13	428	18	16	13	52	1.75
5203843--5204001	71	2.2	72	80	2	178	21	15	11	50	1.76
5203334--5204159	70	11.7	70	72	10	415	18	16	12	51	1.75
5204149--5204228	36	2.2	35	84	4	97	16	11	11	61	1.57
5204418--5204586	69	2.4	71	80	9	204	17	14	14	52	1.75
5204629--5204760	69	1.9	70	84	1	176	14	15	17	53	1.74
5204308--5204854	246	2.2	245	77	7	554	17	15	14	52	1.75
5204312--5206828	70	35.7	69	67	15	350	18	17	13	51	1.76
5204276--5204786	211	2.4	209	79	6	548	16	15	15	53	1.74
5204730--5204857	36	3.6	35	75	8	123	19	18	10	50	1.76
5204276--5204855	211	2.7	207	77	8	544	16	15	14	52	1.74
5204276--5205154	35	25.3	35	72	8	267	17	16	13	51	1.76
5205233--5205650	35	11.9	34	74	11	199	20	17	12	49	1.79
5205451--5205627	71	2.5	70	78	7	178	20	18	12	48	1.80
5205237--5205614	106	3.6	105	73	11	281	20	17	12	48	1.80
5205608--5205695	45	2.0	45	84	4	115	19	13	14	52	1.75
5205573--5205730	80	2.0	80	85	7	214	17	14	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5205538--5205748	115	1.8	115	82	2	271	16	15	14	53	1.73
5205340--5206156	35	22.9	36	67	13	173	19	16	12	51	1.76
5205915--5206191	141	2.0	140	80	8	321	18	16	11	53	1.72
5206169--5206211	20	2.2	20	95	0	77	20	9	11	58	1.61
5206249--5207453	35	34.9	35	70	11	317	17	17	13	51	1.76
5206248--5206305	18	3.3	18	67	13	57	13	22	10	53	1.70
5206637--5206875	106	2.3	104	78	9	243	17	19	15	47	1.82
5207110--5207243	72	1.9	71	85	1	187	23	11	11	53	1.69
5207107--5207336	69	3.3	69	79	4	221	20	13	12	54	1.69
5207517--5208062	70	7.8	70	73	9	360	16	15	15	52	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109