genome.fa.s35.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  68  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13516652--13516681	14	2.1	15	93	6	53	50	0	0	50	1.00
13520948--13521000	12	4.3	12	78	4	52	26	5	1	66	1.25
13521008--13521041	16	2.1	16	89	10	52	55	0	2	41	1.15
13523889--13523926	19	2.0	20	89	5	60	76	0	10	13	1.02
13524656--13524704	24	2.0	24	92	0	80	24	16	24	34	1.95
13524657--13524713	24	2.6	23	83	10	66	26	15	22	35	1.94
13525137--13525185	23	2.1	23	81	7	55	32	6	10	51	1.61
13525134--13525202	22	3.1	22	76	12	68	36	4	13	46	1.62
13525161--13525202	21	2.0	21	85	4	57	30	2	16	50	1.58
13525470--13525526	18	3.2	18	76	11	55	35	12	14	38	1.83
13525547--13525601	17	3.2	17	81	2	65	32	16	18	32	1.93
13525531--13525619	34	2.6	33	77	10	90	34	17	15	31	1.92
13525666--13525719	18	3.0	18	78	8	56	37	16	12	33	1.87
13525660--13525739	35	2.3	35	76	8	83	35	15	11	38	1.83
13527151--13527211	30	2.1	28	82	11	70	16	4	6	72	1.24
13530813--13530898	41	2.1	41	82	8	104	34	11	10	43	1.76
13532466--13532507	11	3.8	11	90	0	66	19	0	30	50	1.48
13532465--13532507	22	2.0	22	95	0	77	20	0	30	48	1.50
13532533--13532688	52	3.0	52	82	5	190	39	8	25	25	1.85
13533169--13533251	31	2.7	31	84	3	114	31	16	24	27	1.97
13533305--13533370	23	2.8	23	81	9	71	33	6	34	25	1.81
13533581--13533611	11	2.8	11	95	0	53	16	0	32	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13533639--13533740	52	2.0	52	84	3	134	42	6	23	27	1.79
13550494--13550775	135	2.1	135	89	1	431	35	16	12	35	1.87
13557022--13557070	19	2.6	19	81	12	64	18	12	30	38	1.87
13557196--13557259	3	20.7	3	79	17	69	26	3	0	70	1.02
13559295--13559378	8	10.8	8	74	18	52	30	1	1	66	1.07
13559298--13559384	17	5.2	16	80	13	86	31	1	1	66	1.06
13559376--13559424	3	16.3	3	100	0	98	32	0	0	67	0.91
13559292--13559423	18	7.4	18	80	11	71	31	0	0	66	1.02
13560593--13560633	22	1.9	21	85	5	55	53	17	2	26	1.56
13563856--13563883	13	2.2	13	100	0	56	28	0	21	50	1.49
13570174--13570204	2	15.5	2	100	0	62	48	0	51	0	1.00
13571072--13571109	19	2.0	19	100	0	76	26	21	15	36	1.93
13575494--13575533	21	2.0	20	85	5	53	37	2	0	60	1.11
13575789--13575815	3	9.0	3	100	0	54	66	0	0	33	0.92
13575811--13575993	91	2.0	91	87	2	260	33	17	20	28	1.95
13577560--13577645	8	10.8	8	80	0	91	24	3	25	46	1.68
13577560--13577645	24	3.6	24	88	0	118	24	3	25	46	1.68
13577894--13577963	3	23.3	3	97	0	131	31	0	1	67	1.00
13580389--13580502	17	6.4	18	74	18	71	7	1	11	78	1.02
13580421--13580486	16	3.9	16	77	14	62	9	1	9	80	0.97
13580535--13580623	46	1.9	46	86	4	126	43	11	12	32	1.78
13580593--13580652	29	2.1	29	93	0	102	46	13	10	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13580643--13580944	46	6.7	46	72	11	203	48	9	10	31	1.71
13580697--13580944	46	5.5	46	75	12	208	48	9	9	32	1.69
13581113--13581176	33	1.9	33	84	6	85	26	23	15	34	1.95
13583003--13583029	14	1.9	14	100	0	54	88	3	0	7	0.61
13583511--13583787	135	2.1	135	94	1	484	42	7	11	38	1.68
13584096--13584127	4	8.0	4	100	0	64	75	0	0	25	0.81
13585030--13585122	8	12.3	7	72	18	55	5	15	2	77	1.04
13585030--13585122	21	4.4	21	68	17	59	5	15	2	77	1.04
13589586--13589623	16	2.4	16	86	4	51	10	18	2	68	1.30
13591481--13591524	8	5.5	8	81	10	54	18	0	29	52	1.46
13592643--13592694	21	2.5	21	90	6	79	48	0	1	50	1.12
13592643--13592694	22	2.5	22	93	6	90	48	0	1	50	1.12
13603669--13603710	3	14.3	3	85	5	59	61	2	2	33	1.21
13604085--13604118	2	17.0	2	100	0	68	50	0	0	50	1.00
13604512--13604547	2	18.0	2	88	0	54	50	5	0	44	1.25
13605588--13605634	18	2.3	21	82	17	64	38	0	4	57	1.18
13605897--13605921	6	4.2	6	100	0	50	68	0	0	32	0.90
13607570--13607650	38	2.1	38	88	6	117	59	11	7	22	1.56
13610315--13610352	20	2.0	20	84	5	51	42	2	5	50	1.39
13612609--13612688	40	2.0	41	92	2	135	27	17	16	38	1.91
13617247--13617297	23	2.3	22	82	3	57	41	5	1	50	1.37
13617257--13617299	23	1.9	23	85	4	61	39	4	2	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13617906--13617938	17	2.0	16	94	5	57	69	0	6	24	1.10
13617870--13617939	31	2.2	31	78	12	72	64	4	5	25	1.34
13619601--13619648	23	2.1	23	92	0	78	22	22	10	43	1.84
13621138--13621164	2	13.5	2	100	0	54	51	0	0	48	1.00
13633151--13633268	59	2.0	59	94	0	209	29	25	8	36	1.85
13634819--13634844	12	2.2	12	100	0	52	0	38	0	61	0.96
13635925--13635992	29	2.3	29	80	7	75	42	7	1	48	1.40
13639382--13639432	25	2.1	25	85	10	70	31	3	5	58	1.40
13641934--13641972	19	2.1	19	90	9	62	35	20	0	43	1.52
13645735--13645812	37	2.1	37	92	0	129	35	2	1	60	1.19
13645739--13645801	21	3.2	20	68	21	53	34	3	1	60	1.22
13649206--13649244	16	2.5	15	84	15	53	71	2	2	23	1.10
13649207--13649261	20	2.6	21	81	16	69	70	3	1	23	1.12
13653046--13653122	32	2.3	32	82	6	84	42	6	2	48	1.42
13653763--13653809	2	23.5	2	100	0	94	0	48	0	51	1.00
13657191--13657717	265	2.0	265	92	0	867	37	11	17	34	1.85
13658047--13658171	40	3.1	40	85	7	155	32	8	7	51	1.60
13658132--13658305	71	2.4	75	80	6	205	34	7	8	50	1.60
13659608--13659639	3	10.7	3	100	0	64	34	0	0	65	0.93
13666334--13666374	19	2.2	19	86	8	57	53	0	4	41	1.22
13679334--13679364	13	2.4	13	100	0	62	61	0	0	38	0.96
13679451--13679513	26	2.6	24	79	13	67	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13680254--13680312	22	2.6	22	89	7	84	52	0	1	45	1.10
13680254--13680312	7	8.0	7	87	9	82	52	0	1	45	1.10
13680254--13680312	15	4.0	14	89	6	82	52	0	1	45	1.10
13680255--13680362	15	7.8	15	72	17	58	47	0	1	50	1.11
13680254--13680366	22	5.1	22	70	13	70	48	0	1	49	1.11
13680359--13680388	15	1.9	16	93	6	53	50	0	0	50	1.00
13680846--13680888	21	2.0	21	90	0	68	41	6	2	48	1.43
13682028--13682111	32	2.6	33	82	1	107	26	3	10	59	1.47
13682051--13682101	16	3.2	16	77	0	57	29	1	5	62	1.29
13682068--13682137	27	2.6	25	78	14	70	31	0	7	61	1.23
13682098--13682164	31	2.1	31	83	8	82	40	1	5	52	1.35
13682150--13682202	21	2.6	21	88	11	83	49	0	1	49	1.12
13682192--13682246	8	7.1	8	73	8	51	60	1	0	38	1.08
13683556--13683600	21	2.1	22	83	4	56	51	0	0	48	1.00
13685492--13685524	16	2.1	15	94	5	57	45	0	0	54	0.99
13686786--13686827	22	1.9	22	85	9	59	21	11	0	66	1.23
13689542--13689904	145	2.5	146	81	3	392	41	11	13	32	1.81
13694907--13694958	28	1.9	26	88	7	77	30	5	9	53	1.57
13695092--13695134	20	2.2	19	95	4	77	18	6	20	53	1.67
13697584--13697626	22	2.0	22	86	9	61	79	0	11	9	0.95
13697688--13697911	58	3.8	58	89	2	324	40	10	5	43	1.62
13697924--13697991	5	13.4	5	79	17	70	80	0	2	16	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13697924--13697997	6	12.0	6	76	15	71	79	0	4	16	0.87
13698787--13698872	6	14.2	6	80	11	95	76	0	2	20	0.89
13698790--13698945	16	9.9	16	68	17	87	66	0	4	28	1.11
13698790--13698945	3	49.7	3	68	16	68	66	0	4	28	1.11
13699141--13699540	43	9.5	41	76	12	271	39	20	15	25	1.91
13699142--13699454	125	2.5	125	91	1	491	38	20	15	25	1.92
13699379--13699564	43	4.3	42	78	10	180	41	17	16	24	1.89
13699379--13699564	86	2.2	83	82	10	214	41	17	16	24	1.89
13700583--13700622	14	2.7	15	85	14	57	10	20	0	70	1.16
13700621--13700663	21	2.0	22	90	4	70	11	9	0	79	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109