genome.fa.s35.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  11  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1913124--1913157	12	2.8	12	86	0	50	88	8	2	0	0.62
1922018--1922042	4	6.2	4	100	0	50	76	0	0	24	0.80
1926584--1926629	5	9.4	5	79	13	51	52	0	2	45	1.13
1928093--1928187	51	1.9	48	85	10	129	44	4	32	18	1.69
1928241--1928400	48	3.3	48	84	6	180	46	6	27	18	1.74
1935949--1935988	20	2.1	19	85	4	53	52	7	0	40	1.30
1937235--1937291	29	2.0	29	86	6	80	42	15	10	31	1.81
1938663--1938744	29	2.7	30	83	12	89	58	0	0	41	0.98
1938674--1938742	30	2.3	31	80	14	81	60	0	0	39	0.97
1939770--1939821	16	3.1	17	76	15	54	71	0	0	28	0.87
1939773--1939827	25	2.2	26	86	3	76	70	0	0	29	0.87
1940823--1940847	6	4.2	6	100	0	50	52	0	0	48	1.00
1960500--1960529	3	10.0	3	92	0	51	63	0	0	36	0.95
1962199--1962347	75	2.0	75	95	0	271	33	24	4	36	1.77
1962470--1962500	11	2.8	11	90	0	53	51	0	0	48	1.00
1962522--1962582	16	3.9	16	81	14	58	59	1	0	39	1.08
1962818--1962867	20	2.5	20	80	9	57	82	8	6	4	0.96
1963782--1963814	15	2.1	17	88	11	52	18	6	0	75	1.00
1964258--1964308	19	2.8	17	83	16	66	47	0	0	52	1.00
1964372--1964433	26	2.3	27	78	13	74	54	4	6	33	1.47
1965111--1965148	2	19.0	2	88	0	58	44	0	5	50	1.24
1968985--1969125	70	2.0	70	100	0	282	43	17	12	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1968993--1969106	34	3.3	34	62	18	81	42	16	11	28	1.83
1971534--1971603	15	4.7	15	67	10	54	38	11	8	41	1.72
1982812--1982865	27	2.0	27	88	0	81	29	25	20	24	1.99
1983741--1983801	17	3.6	16	74	10	59	73	8	3	14	1.19
1984017--1984055	19	2.0	20	90	5	62	15	2	0	82	0.79
1985769--1985810	3	14.0	3	94	0	75	66	2	0	30	1.04
1985958--1986012	25	2.2	24	78	15	58	52	5	1	40	1.35
1987881--1987974	31	3.1	31	74	20	92	45	0	4	50	1.21
1988456--1988504	25	2.0	25	83	0	62	36	6	0	57	1.24
1989413--1989548	61	2.2	61	81	5	150	38	2	18	40	1.66
1989474--1989594	61	2.0	61	82	9	149	34	2	22	40	1.67
1989783--1989988	115	1.8	112	81	5	252	37	5	16	40	1.71
1991354--1991495	62	2.4	59	80	9	153	35	7	13	43	1.71
1993963--1993994	11	2.9	11	100	0	64	43	18	0	37	1.51
1994298--1994327	14	2.1	14	93	0	51	46	0	0	53	1.00
1999034--1999077	17	2.4	17	85	11	52	52	0	0	47	1.00
2000899--2001055	52	3.0	51	83	5	181	27	21	7	43	1.80
2001359--2001406	25	1.9	25	91	0	78	18	35	10	35	1.85
2009426--2009477	7	7.7	7	84	4	63	46	1	11	40	1.51
2012376--2012409	13	2.4	15	90	9	54	44	5	0	50	1.26
2015823--2015861	2	19.5	2	100	0	78	51	0	0	48	1.00
2020637--2020681	11	3.9	11	82	5	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2020637--2020679	12	3.7	12	84	3	61	34	0	0	65	0.93
2029719--2029766	7	7.0	7	83	4	53	47	2	12	37	1.53
2032555--2032599	21	2.1	21	87	4	63	57	2	0	40	1.11
2032687--2032720	13	2.4	15	90	9	54	44	5	0	50	1.26
2036139--2036175	2	18.5	2	100	0	74	51	0	0	48	1.00
2040252--2040296	11	3.9	11	82	5	54	33	0	0	66	0.92
2040252--2040294	12	3.7	12	84	3	61	34	0	0	65	0.93
2043224--2043279	28	1.9	29	85	7	78	60	1	5	32	1.29
2044474--2044549	1	76.0	1	70	0	53	85	3	2	7	0.80
2044480--2044546	14	4.8	13	80	12	71	85	4	1	8	0.80
2044480--2044548	10	6.7	10	80	8	68	85	4	1	8	0.78
2044474--2044549	20	3.8	19	85	13	100	85	3	2	7	0.80
2048198--2048237	12	3.3	12	96	0	71	40	2	7	50	1.44
2049010--2049040	2	15.5	2	100	0	62	0	48	0	51	1.00
2049585--2049661	33	2.4	31	79	14	77	44	0	1	54	1.08
2050382--2050463	40	2.0	40	95	0	146	12	7	19	60	1.54
2050585--2050635	21	2.4	21	80	0	57	39	1	21	37	1.65
2050762--2050796	18	1.9	18	88	0	52	60	0	0	40	0.97
2050861--2050914	22	2.2	25	84	12	69	64	0	3	31	1.11
2052259--2052516	90	3.0	88	91	6	415	42	15	18	23	1.88
2053160--2053218	29	2.0	29	93	0	100	28	18	18	33	1.95
2054865--2054906	16	2.4	18	84	11	52	54	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2060435--2060511	28	2.8	28	82	7	86	59	5	3	31	1.37
2060435--2060499	28	2.2	29	86	5	87	55	4	4	35	1.41
2061718--2061757	10	3.8	10	81	12	53	75	0	7	17	1.03
2061700--2061768	16	4.2	16	75	10	50	76	2	5	14	1.08
2061690--2061764	22	3.5	22	82	8	93	78	2	5	13	1.02
2066224--2066256	2	16.5	2	100	0	66	0	48	0	51	1.00
2066791--2066867	33	2.4	31	79	14	77	42	0	2	54	1.14
2067901--2067935	18	1.9	18	88	0	52	60	0	0	40	0.97
2068022--2068068	17	2.8	17	78	15	53	68	0	0	31	0.90
2068000--2068055	16	3.4	16	76	20	53	60	0	1	37	1.07
2068026--2068068	11	3.9	11	79	11	52	72	0	0	27	0.85
2069632--2069889	90	3.0	88	89	6	397	42	15	18	22	1.89
2070525--2070583	29	2.0	29	96	0	109	30	18	16	33	1.94
2075851--2075910	22	2.7	22	77	10	68	28	26	15	30	1.96
2076212--2076274	22	2.9	22	80	0	63	38	23	9	28	1.86
2076043--2076252	110	1.9	110	83	3	271	23	18	16	41	1.89
2076289--2076525	36	6.5	36	70	7	127	18	18	16	46	1.84
2076269--2076525	110	2.3	110	85	2	338	20	18	15	45	1.85
2076388--2076562	74	2.4	74	77	5	183	19	17	17	45	1.85
2077125--2077241	29	4.0	29	75	4	94	46	31	1	20	1.61
2077155--2077295	58	2.4	57	80	5	149	48	26	2	21	1.61
2077199--2077309	29	3.9	29	83	1	125	49	27	1	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2077232--2077282	15	3.5	15	76	15	61	49	21	1	27	1.60
2077236--2077275	21	1.9	21	84	0	53	50	17	2	30	1.59
2077264--2077324	21	3.0	20	75	2	59	52	26	0	21	1.47
2077260--2077367	42	2.6	42	80	15	116	47	27	2	22	1.65
2079050--2079108	24	2.5	24	77	5	57	3	3	22	71	1.16
2079430--2079470	8	4.7	9	82	11	50	82	2	14	0	0.76
2079430--2079470	17	2.4	17	91	0	64	82	2	14	0	0.76
2079469--2079511	3	14.0	3	95	4	77	65	0	0	34	0.93
2079651--2079706	22	2.5	22	78	16	62	51	19	0	28	1.47
2079651--2079713	15	4.3	15	74	9	58	52	19	0	28	1.46
2081104--2081161	22	2.7	21	84	7	80	75	3	6	13	1.13
2091296--2091454	79	2.0	79	98	0	309	37	20	13	28	1.90
2104974--2105043	31	2.2	32	82	12	92	27	22	24	25	2.00
2105096--2105141	20	2.3	20	85	3	67	28	30	21	19	1.98
2105593--2105868	59	4.7	58	88	4	385	43	8	14	33	1.76
2105589--2105868	119	2.4	115	85	8	384	42	8	14	33	1.77
2106739--2106767	15	1.9	15	100	0	58	65	0	6	27	1.18
2106934--2106978	22	2.0	22	83	8	56	62	4	17	15	1.49
2107193--2107259	35	1.9	35	90	0	107	34	13	10	41	1.79
2107185--2107261	35	2.2	35	83	6	102	33	11	10	44	1.75
2107546--2108086	137	4.0	136	80	4	572	28	11	15	44	1.81
2108070--2108429	99	3.6	99	76	3	339	24	11	21	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2108490--2108616	49	2.6	50	88	5	195	33	11	14	39	1.83
2108814--2108859	3	16.3	3	86	8	62	26	0	0	73	0.83
2108812--2108849	19	2.0	19	94	0	67	23	0	0	76	0.79
2109695--2109754	21	3.0	21	80	7	70	28	0	1	70	0.97
2113501--2113573	31	2.3	31	85	7	92	49	0	1	49	1.09
2113672--2113714	22	2.0	22	86	9	61	20	0	2	76	0.89
2114468--2114507	15	2.7	15	84	0	62	40	0	0	60	0.97
2114511--2114581	24	2.9	23	80	16	72	47	2	0	49	1.16
2114545--2114590	24	2.0	22	87	8	65	52	4	0	43	1.21
2115141--2115170	2	15.0	2	92	0	51	3	46	0	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109