genome.fa.s35.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  82  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16572208--16572287	22	3.9	22	71	14	71	30	6	10	53	1.58
16572461--16572505	23	2.0	23	86	0	63	40	4	6	48	1.49
16572600--16572667	21	3.1	21	66	15	57	39	7	7	45	1.60
16572603--16572667	22	3.0	22	68	17	62	36	7	7	47	1.61
16572855--16573038	91	2.0	90	90	3	289	28	15	16	39	1.89
16576806--16576844	20	2.0	20	94	0	69	51	25	2	20	1.60
16576904--16577903	514	2.0	502	90	3	1574	39	7	12	40	1.71
16577955--16577997	22	2.0	22	86	9	61	55	0	4	39	1.20
16579603--16579633	2	15.5	2	100	0	62	48	0	0	51	1.00
16584111--16584155	20	2.3	20	84	3	56	13	15	15	55	1.69
16584500--16584530	13	2.4	13	94	0	53	25	0	6	67	1.14
16590253--16590305	9	5.4	9	75	16	52	83	0	15	1	0.74
16590251--16590316	31	2.2	29	86	7	89	83	0	12	4	0.79
16591207--16591278	21	3.4	21	76	7	65	34	6	15	43	1.73
16591526--16591658	41	3.2	41	83	2	194	22	15	15	46	1.83
16591588--16591727	69	2.0	69	90	0	217	21	16	16	45	1.85
16591662--16591751	41	2.2	41	89	0	135	20	15	16	47	1.82
16591678--16591763	41	2.1	41	88	0	127	20	15	19	44	1.87
16591978--16592025	9	5.2	9	79	20	55	22	0	0	77	0.78
16591977--16592021	24	1.9	23	86	13	65	22	0	0	77	0.76
16591985--16592062	20	3.9	20	72	21	65	24	2	2	70	1.12
16593198--16593262	27	2.5	26	78	9	71	36	20	1	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16597897--16597945	22	2.2	22	89	7	73	77	12	4	6	1.09
16597900--16597939	13	3.1	13	88	0	53	80	15	2	2	0.93
16597982--16598032	12	4.3	12	75	2	50	21	58	13	5	1.56
16597982--16598032	24	2.2	23	82	10	59	21	58	13	5	1.56
16599567--16599948	193	2.0	192	94	3	669	36	12	15	35	1.84
16611465--16611896	48	8.8	48	84	8	434	28	12	25	34	1.92
16611465--16611896	49	8.8	48	85	10	522	28	12	25	34	1.92
16611465--16611843	99	3.9	97	87	9	522	28	12	25	33	1.92
16611465--16611879	199	2.1	197	85	11	561	28	12	25	33	1.91
16612059--16612107	22	2.2	22	89	7	73	77	12	4	6	1.09
16612062--16612101	13	3.1	13	88	0	53	80	15	2	2	0.93
16612144--16612192	11	4.4	11	76	2	53	22	57	14	6	1.59
16614070--16614133	19	3.7	19	67	32	63	34	43	21	0	1.53
16614075--16614164	30	3.0	30	90	0	135	32	41	23	3	1.71
16614861--16615210	191	1.8	190	95	1	630	36	10	15	36	1.82
16627838--16627961	62	2.0	62	100	0	248	25	25	11	37	1.89
16628767--16628822	27	2.1	27	86	0	76	42	7	5	44	1.54
16628872--16628928	27	2.1	27	83	6	71	57	1	1	38	1.19
16629346--16629376	15	2.1	15	93	0	53	3	19	3	74	1.10
16635301--16635357	8	7.5	8	76	20	52	77	8	10	3	1.11
16635301--16635357	15	3.9	14	80	15	53	77	8	10	3	1.11
16640891--16640922	16	1.9	17	93	6	57	31	9	12	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16640937--16640991	23	2.4	23	87	3	85	32	12	12	41	1.81
16640982--16641058	40	1.9	40	83	0	100	32	14	10	42	1.79
16641121--16641237	23	5.3	22	72	11	78	35	9	11	43	1.74
16641897--16642036	50	2.8	50	79	11	137	34	11	12	42	1.78
16641897--16642036	49	2.9	48	80	10	124	34	11	12	42	1.78
16642428--16642467	16	2.4	17	83	8	55	80	5	7	7	1.03
16649540--16649624	42	2.0	43	86	6	120	38	11	18	30	1.87
16650810--16650836	13	2.1	13	100	0	54	29	14	7	48	1.71
16656870--16656894	1	25.0	1	100	0	50	100	0	0	0	0.00
16656983--16657038	28	2.0	28	89	3	85	57	3	7	32	1.43
16657289--16657330	21	1.9	23	85	9	61	45	14	0	40	1.45
16667456--16667518	23	2.8	22	83	7	81	60	14	3	22	1.48
16667872--16667918	23	2.1	23	84	4	60	65	19	0	14	1.26
16669551--16669604	14	3.9	13	83	11	63	1	9	3	85	0.80
16670516--16670551	17	2.1	17	94	0	63	27	2	0	69	1.02
16670951--16670980	13	2.2	14	94	5	53	0	10	10	80	0.92
16671037--16671144	51	2.1	51	87	0	153	43	22	7	26	1.79
16671519--16671731	49	4.3	50	78	7	166	43	12	10	33	1.77
16672476--16672520	21	2.2	21	80	7	58	55	17	4	22	1.60
16672592--16672674	37	2.2	37	82	0	94	46	12	3	37	1.58
16672495--16672775	155	1.8	155	82	4	370	45	11	6	35	1.67
16672794--16673122	156	2.1	157	90	2	511	39	12	11	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16672990--16673037	23	2.1	23	88	0	69	50	12	6	31	1.65
16672967--16673368	112	3.6	110	76	9	368	41	13	11	33	1.81
16672794--16673188	156	2.5	155	86	3	499	40	12	11	36	1.79
16673162--16673385	23	9.9	23	67	13	90	41	12	14	31	1.84
16672736--16673268	268	2.0	267	79	7	582	40	12	11	35	1.79
16673286--16673432	68	2.2	67	81	3	161	42	11	13	31	1.80
16678501--16678539	11	3.5	11	85	3	51	87	2	0	10	0.65
16678481--16678539	18	3.2	19	76	11	59	79	6	0	13	0.92
16678502--16678539	20	1.9	20	89	10	60	86	2	0	10	0.66
16679195--16679225	16	1.9	16	93	0	53	0	3	29	67	1.06
16679897--16679940	22	2.0	22	95	0	79	50	0	6	43	1.29
16679931--16679964	12	2.8	12	90	4	50	47	0	2	50	1.16
16682588--16682646	29	2.1	28	81	9	66	32	1	5	61	1.28
16686244--16686359	18	6.7	18	73	13	91	32	37	2	27	1.71
16689455--16689529	16	4.4	17	75	11	57	9	5	6	78	1.08
16690228--16690341	51	2.3	50	78	1	120	37	15	14	31	1.89
16697788--16697861	37	2.0	37	97	2	141	70	2	16	10	1.27
16698108--16698529	39	10.8	38	80	3	349	26	10	22	40	1.85
16698106--16698529	78	5.4	78	82	4	462	26	10	21	41	1.86
16698082--16698459	156	2.4	156	87	1	526	25	10	21	42	1.85
16698082--16698529	156	2.9	155	84	2	524	26	10	21	41	1.85
16699585--16699639	18	3.1	18	84	2	76	12	3	7	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16699603--16699636	12	2.8	12	95	0	59	14	2	11	70	1.27
16699724--16699772	11	4.4	11	78	12	55	75	0	2	22	0.90
16699726--16699807	22	3.8	21	69	19	53	71	1	2	24	1.05
16699898--16699945	17	2.9	17	79	14	57	70	0	2	27	0.98
16700839--16700872	10	3.5	10	88	4	52	35	0	0	64	0.94
16704011--16704043	16	2.1	16	94	0	57	72	6	0	21	1.05
16704517--16704565	14	3.5	14	85	0	62	85	6	6	2	0.80
16704515--16704569	21	2.6	21	82	0	83	85	5	7	1	0.80
16704525--16704563	7	5.7	7	90	3	62	89	7	0	2	0.56
16708441--16708473	17	1.9	17	93	0	57	27	6	15	51	1.66
16708818--16708855	18	2.1	19	90	5	60	63	0	0	36	0.95
16724071--16724104	17	2.0	17	100	0	68	70	0	0	29	0.87
16724070--16724107	17	2.3	16	91	8	67	73	0	0	26	0.83
16725391--16725424	16	2.1	16	94	0	59	29	11	17	41	1.85
16733634--16733706	23	3.3	23	64	14	62	16	23	1	58	1.45
16733631--16733717	44	2.0	44	95	0	156	20	22	2	54	1.56
16738678--16740166	744	2.0	745	95	0	2703	30	14	12	42	1.82
16742550--16742598	12	3.7	12	76	23	53	59	0	0	40	0.98
16742539--16742599	29	2.1	29	100	0	122	52	0	0	47	1.00
16742539--16742586	17	3.1	17	72	27	61	50	0	0	50	1.00
16743833--16743877	23	2.0	23	90	0	72	60	17	2	20	1.47
16746011--16746082	37	1.9	37	88	0	108	19	19	18	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16751234--16751282	12	3.7	12	76	23	53	59	0	0	40	0.98
16751223--16751283	29	2.1	29	100	0	122	52	0	0	47	1.00
16751223--16751270	17	3.1	17	72	27	61	50	0	0	50	1.00
16752516--16752560	23	2.0	23	90	0	72	60	17	2	20	1.47
16754703--16754774	37	1.9	37	88	0	108	19	19	18	43	1.89
16756316--16756363	25	1.9	25	83	8	62	31	0	4	64	1.12
16757782--16757825	2	22.0	2	95	0	61	50	6	0	43	1.29
16757781--16757834	16	3.4	16	82	5	65	50	9	0	40	1.35
16758777--16758832	21	2.7	21	94	2	96	50	14	3	32	1.60
16761761--16761792	16	2.0	16	93	0	55	25	12	9	53	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109