genome.fa.s35.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  99  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19802387--19802414	2	14.0	2	100	0	56	50	0	0	50	1.00
19803553--19803579	5	5.4	5	100	0	54	18	0	0	81	0.69
19811721--19811752	2	16.0	2	100	0	64	0	50	0	50	1.00
19811990--19812036	24	2.0	23	84	8	60	29	10	0	59	1.31
19814863--19814914	22	2.5	22	87	9	74	26	5	0	67	1.13
19816875--19816919	23	1.9	25	82	13	60	31	0	6	62	1.21
19816976--19817000	13	1.9	13	100	0	50	44	0	0	56	0.99
19844273--19844417	45	3.1	48	78	11	149	55	0	2	42	1.11
19844353--19844428	13	6.2	13	78	15	81	59	0	3	36	1.16
19844353--19844428	23	3.1	26	77	12	79	59	0	3	36	1.16
19844490--19844542	16	3.4	15	82	7	61	49	0	1	49	1.12
19844510--19844579	9	8.1	9	72	20	51	50	1	0	48	1.09
19844510--19844570	26	2.4	25	86	10	88	49	1	0	49	1.10
19847320--19847371	22	2.5	22	93	6	90	48	0	1	50	1.12
19849390--19849423	14	2.5	14	90	4	52	70	0	0	29	0.87
19849498--19849524	2	13.5	2	100	0	54	48	0	0	51	1.00
19863655--19863683	2	14.5	2	100	0	58	48	0	0	51	1.00
19869057--19869090	9	4.0	8	85	14	50	26	0	0	73	0.83
19869057--19869090	17	2.0	17	88	11	52	26	0	0	73	0.83
19871671--19871696	2	13.0	2	100	0	52	50	0	0	50	1.00
19876669--19876758	29	3.1	29	96	1	164	11	8	34	45	1.71
19877183--19877223	16	2.4	18	80	12	50	9	12	2	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19877890--19877926	19	1.9	19	89	10	58	75	0	18	5	0.99
19880364--19880394	15	2.1	15	93	0	53	51	0	0	48	1.00
19893841--19893879	17	2.3	18	82	13	55	30	0	0	69	0.89
19893850--19893884	17	2.1	16	89	5	52	37	0	0	62	0.95
19893986--19894036	19	2.7	19	83	16	70	49	0	0	50	1.00
19893989--19894033	21	2.2	21	92	7	76	51	0	0	48	1.00
19897279--19897331	21	2.4	23	87	12	76	49	0	0	50	1.00
19898415--19898444	2	15.0	2	100	0	60	50	0	0	50	1.00
19906000--19906038	17	2.3	18	82	13	55	30	0	0	69	0.89
19906009--19906043	17	2.1	16	89	5	52	37	0	0	62	0.95
19906566--19906604	20	2.0	20	85	10	53	51	0	0	48	1.00
19906567--19906645	27	3.1	24	74	12	77	50	0	0	49	1.00
19908134--19908160	14	1.9	14	100	0	54	37	0	14	48	1.45
19910381--19910412	2	16.0	2	100	0	64	50	0	0	50	1.00
19911941--19911966	2	13.0	2	100	0	52	50	0	0	50	1.00
19919220--19919284	3	22.0	3	73	20	57	29	3	1	66	1.16
19920040--19920100	15	3.8	15	75	12	59	13	0	16	70	1.17
19920045--19920098	21	2.5	21	81	3	54	11	0	14	74	1.08
19923775--19923838	26	2.6	25	76	16	69	28	6	9	56	1.55
19927148--19927172	12	2.1	12	100	0	50	32	0	16	52	1.44
19927606--19927663	27	2.1	27	84	6	73	29	13	5	51	1.63
19930888--19930914	14	1.9	14	100	0	54	14	22	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19932190--19932244	26	2.2	25	81	12	69	52	0	7	40	1.29
19932769--19932869	50	2.0	50	85	9	136	41	12	3	41	1.62
19944125--19944182	22	2.7	23	76	7	59	41	0	1	56	1.09
19944163--19944189	13	2.1	13	100	0	54	29	0	0	70	0.88
19945415--19945460	23	2.0	23	86	4	65	26	0	2	71	0.97
19946557--19946612	3	18.3	3	88	3	85	64	3	0	32	1.11
19947107--19947134	13	2.2	13	100	0	56	67	0	0	32	0.91
19949130--19949206	32	2.5	32	85	4	104	31	5	33	29	1.80
19950020--19950069	14	3.4	14	78	10	55	40	0	2	58	1.10
19950022--19950083	30	2.1	30	84	0	79	43	0	1	54	1.09
19956011--19956044	14	2.3	15	85	5	52	44	11	5	38	1.65
19956063--19956098	14	2.6	14	86	0	54	36	2	2	58	1.27
19964145--19964242	51	1.9	51	91	0	160	14	20	22	42	1.88
19964339--19964483	54	2.7	55	75	9	154	18	20	17	44	1.87
19965589--19965641	24	2.2	24	80	6	63	3	32	3	60	1.32
19971295--19971368	27	2.7	26	81	8	67	50	2	2	44	1.30
19971439--19971512	29	2.6	28	83	10	89	50	4	0	45	1.20
19971452--19971524	29	2.4	29	86	4	101	47	5	0	46	1.25
19973954--19974024	35	2.0	35	91	0	115	45	2	0	52	1.15
19973588--19975581	683	2.9	685	95	2	3585	41	9	7	41	1.65
19975549--19975605	24	2.4	24	100	0	114	49	7	3	40	1.47
19975545--19975615	24	2.6	29	74	25	89	50	5	2	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19978588--19978692	30	3.5	29	81	10	113	25	0	23	49	1.56
19978602--19978656	16	3.6	16	71	14	53	25	0	25	49	1.51
19978615--19978709	7	12.1	8	68	23	60	25	1	25	48	1.58
19978588--19978718	30	4.2	30	77	13	106	25	0	25	48	1.56
19980171--19980200	7	4.4	7	91	8	53	13	0	0	86	0.57
19980171--19980200	13	2.2	13	94	5	51	13	0	0	86	0.57
19980458--19980499	22	1.9	22	100	0	84	28	26	23	21	1.99
19980458--19980701	132	1.8	132	85	3	339	36	16	21	25	1.94
19980626--19980824	109	1.8	108	83	1	263	41	16	18	24	1.90
19980734--19980912	88	2.0	88	83	4	227	41	18	18	21	1.91
19980609--19981028	198	2.1	196	84	3	533	40	16	19	23	1.91
19980817--19981211	110	3.6	110	81	5	485	39	17	20	21	1.92
19980816--19981226	220	1.9	220	86	3	585	39	17	20	22	1.92
19980817--19981264	110	4.1	110	79	6	460	38	17	20	22	1.93
19981538--19981646	41	2.7	41	84	5	132	33	14	17	34	1.90
19983316--19983346	13	2.5	13	94	5	55	3	6	0	90	0.55
19986877--19986901	5	5.0	5	100	0	50	80	0	0	20	0.72
19988575--19988649	7	10.0	7	72	17	53	22	0	24	53	1.46
19988575--19988675	17	6.4	16	76	15	86	23	0	24	51	1.48
19988568--19988675	32	3.5	30	80	13	112	23	0	25	50	1.49
19988568--19988672	48	2.3	46	86	8	142	21	0	25	52	1.47
19988955--19989010	23	2.5	22	80	11	69	28	3	3	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19989444--19989480	19	2.0	19	94	5	67	16	16	10	56	1.66
19990161--19990202	15	2.7	15	88	3	57	4	2	4	88	0.71
19990161--19990208	24	2.0	25	88	12	73	8	2	4	85	0.80
19990161--19990208	25	2.0	24	87	4	69	8	2	4	85	0.80
19990230--19990270	3	13.7	3	84	0	55	41	0	0	58	0.98
19990225--19990270	9	5.1	9	86	0	56	43	0	0	56	0.99
19992559--19992602	12	3.7	12	76	11	54	45	0	2	52	1.13
19992561--19992620	24	2.4	24	91	5	93	45	0	5	50	1.23
19992575--19992645	13	5.7	13	68	18	53	47	0	4	47	1.21
19992626--19992665	21	2.0	21	90	5	64	52	0	0	47	1.00
20003588--20003629	21	2.0	22	85	4	59	52	2	0	45	1.13
20003616--20003658	14	2.9	16	80	16	56	41	2	0	55	1.12
20005343--20005378	12	2.9	12	88	8	54	58	0	2	38	1.13
20006589--20006959	206	1.8	204	81	4	469	45	7	9	36	1.67
20011115--20011144	8	3.8	8	90	0	51	93	0	6	0	0.35
20011444--20011497	14	3.6	15	76	16	58	72	3	20	3	1.16
20012739--20012826	33	2.6	34	80	7	108	38	14	10	36	1.80
20012739--20012835	34	2.9	35	78	6	119	37	15	10	37	1.82
20013039--20013130	42	2.2	41	82	5	105	29	10	19	40	1.86
20013136--20013410	98	2.8	98	85	2	349	24	10	21	43	1.84
20013064--20013424	98	3.7	98	80	3	325	25	10	20	43	1.84
20013360--20013465	42	2.5	42	78	4	108	24	8	19	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20013261--20013965	141	5.0	140	83	2	738	24	11	20	43	1.85
20013513--20013612	42	2.4	40	81	9	103	25	7	22	46	1.76
20013658--20013752	42	2.3	42	83	7	113	27	13	17	41	1.88
20013308--20013965	281	2.3	279	82	4	752	24	11	20	43	1.85
20014215--20014583	49	7.5	48	79	7	343	29	11	18	40	1.85
20014211--20014586	97	3.8	98	82	5	422	29	10	18	41	1.84
20014213--20014586	48	7.6	50	77	10	351	29	10	18	41	1.84
20014213--20014608	50	8.0	49	75	10	301	29	11	18	40	1.85
20015027--20015075	20	2.5	20	83	6	55	61	8	4	26	1.42
20017740--20017770	8	3.9	8	100	0	62	12	0	64	22	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109