genome.fa.s35.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  34  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5261320--5261573	106	2.4	104	78	8	230	50	15	18	14	1.78
5262990--5263474	106	4.6	104	75	8	342	51	15	16	16	1.76
5262855--5321848	141	425.8	138	67	14	3522	50	13	17	18	1.78
5263676--5263878	72	2.9	70	83	5	230	51	12	15	20	1.76
5263698--5263948	107	2.4	106	77	6	249	51	14	14	19	1.76
5263651--5264122	142	3.4	139	73	7	351	51	13	15	18	1.76
5266003--5266175	72	2.4	71	82	3	188	51	10	16	21	1.74
5267884--5267912	10	2.7	11	89	10	51	72	0	10	17	1.11
5267950--5268396	177	2.5	175	75	7	427	51	14	16	17	1.76
5268034--5268539	212	2.4	205	79	6	471	51	13	16	18	1.76
5268793--5269032	71	3.4	71	76	6	216	51	14	13	21	1.76
5268793--5268926	72	1.9	71	82	4	171	50	15	13	20	1.77
5268989--5269132	71	2.0	72	83	11	181	53	8	15	22	1.68
5269854--5270482	213	3.0	213	81	3	662	50	14	17	17	1.79
5270349--5270638	106	2.8	105	76	5	282	51	15	16	16	1.77
5274186--5274270	43	2.0	43	92	0	143	54	16	17	11	1.71
5274153--5274315	79	2.1	78	80	5	177	55	14	15	14	1.69
5274470--5274628	71	2.3	69	79	7	169	50	13	14	20	1.76
5275620--5275710	36	2.5	36	80	5	94	53	14	17	14	1.72
5275997--5276195	71	2.8	71	74	11	199	51	13	14	21	1.76
5276265--5276537	139	2.0	138	79	5	300	50	13	17	18	1.78
5276715--5276875	71	2.3	70	80	9	159	52	10	18	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5277029--5277583	283	2.0	283	78	1	592	51	12	16	18	1.75
5277940--5278184	104	2.3	104	80	3	249	48	13	19	18	1.81
5280306--5280827	106	4.9	106	71	11	282	50	15	17	16	1.78
5282325--5282773	71	6.4	71	70	13	198	51	14	16	16	1.76
5282195--5283153	106	9.1	106	70	10	405	50	13	17	17	1.78
5282969--5283195	107	2.1	105	81	9	248	51	13	14	19	1.75
5284015--5284194	94	1.9	94	81	4	220	49	7	22	20	1.74
5284321--5284522	106	1.9	106	81	0	242	53	14	15	15	1.72
5291160--5291202	20	2.2	20	91	0	68	34	4	30	30	1.78
5291214--5291595	71	5.4	72	71	14	258	51	15	16	16	1.77
5292126--5292517	174	2.2	175	79	7	413	49	11	18	20	1.78
5292137--5292516	209	1.8	209	80	7	459	49	11	18	20	1.78
5292402--5292587	71	2.6	70	80	9	182	51	11	17	19	1.76
5292993--5293602	106	5.8	104	72	9	335	51	12	17	17	1.76
5293979--5294239	106	2.5	104	81	8	285	50	13	18	18	1.78
5294218--5294253	17	2.1	18	94	5	65	63	11	13	11	1.51
5294544--5294858	106	3.0	107	70	12	263	52	15	15	16	1.75
5294532--5294911	176	2.2	176	79	3	399	52	14	15	17	1.76
5295727--5295806	37	2.2	37	86	4	110	48	17	20	13	1.80
5296479--5296825	106	3.3	106	75	5	263	52	15	16	14	1.75
5297114--5297306	64	2.9	64	78	11	165	50	12	16	20	1.77
5297179--5297312	72	1.9	72	84	7	184	52	13	14	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5297188--5297432	71	3.5	69	78	8	215	51	13	15	20	1.76
5297392--5297524	71	1.9	71	84	4	180	51	9	16	21	1.73
5297479--5297557	37	2.1	38	82	13	94	55	11	13	18	1.68
5297569--5297640	37	1.9	37	83	5	92	47	16	15	20	1.83
5298522--5302695	106	39.8	103	67	13	481	50	13	17	18	1.77
5299103--5299288	71	2.6	71	79	7	173	53	13	12	20	1.72
5299045--5299271	107	2.1	104	79	7	226	54	13	14	18	1.71
5299327--5299477	69	2.2	68	82	4	187	52	13	16	17	1.75
5301221--5301812	176	3.4	177	78	6	465	49	12	18	18	1.79
5301539--5301707	71	2.4	71	75	10	184	49	10	20	20	1.77
5301680--5301854	71	2.5	70	80	4	174	49	14	20	16	1.80
5301962--5302120	72	2.2	70	78	3	165	49	12	21	16	1.78
5302037--5302360	177	1.8	176	80	4	384	50	14	17	17	1.78
5302677--5302710	17	1.9	18	94	5	61	61	11	14	11	1.56
5304421--5304627	71	2.9	67	78	9	191	49	13	19	18	1.79
5304514--5304773	123	2.1	123	89	1	405	51	12	18	17	1.76
5304738--5304773	17	2.1	18	89	5	56	61	11	13	13	1.58
5306702--5306737	17	2.1	18	94	5	65	63	11	13	11	1.51
5310005--5310209	106	1.9	106	81	6	245	50	12	17	19	1.77
5310050--5310361	106	3.0	106	76	8	244	50	13	17	19	1.78
5311097--5311529	139	3.1	141	78	5	362	52	15	17	15	1.75
5313019--5313709	373	1.9	372	81	5	849	50	11	18	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5317175--5317448	139	2.0	140	79	9	301	55	13	16	15	1.70
5317588--5317732	71	2.1	70	80	6	159	51	11	17	19	1.75
5317586--5317791	106	1.9	107	79	5	229	50	13	17	18	1.77
5317705--5317863	72	2.2	70	80	4	158	48	15	17	18	1.81
5318665--5319077	177	2.4	173	79	3	434	53	14	15	16	1.74
5318804--5319073	138	1.9	140	81	3	330	50	15	17	17	1.78
5319438--5319842	176	2.3	176	78	5	410	51	14	15	18	1.76
5322966--5323033	36	1.9	36	87	3	102	52	11	19	16	1.73
5323039--5323135	35	2.8	34	74	12	99	53	10	17	18	1.71
5323218--5323494	35	7.9	35	79	4	216	49	15	18	16	1.80
5324495--5324574	36	2.2	35	84	8	99	15	12	12	60	1.60
5324601--5332543	35	227.8	35	67	14	725	18	17	13	50	1.77
5324607--5324876	141	1.9	140	80	5	312	20	14	14	51	1.77
5324845--5324926	34	2.4	35	83	4	103	17	13	12	57	1.65
5324637--5325209	174	3.3	175	77	6	459	18	16	13	50	1.78
5324987--5325154	71	2.4	68	78	14	169	18	20	13	48	1.81
5325397--5325974	106	5.4	106	74	7	339	16	17	13	51	1.76
5326084--5351753	70	365.9	69	66	13	2111	18	17	13	50	1.78
5326595--5326680	37	2.4	35	75	14	86	18	8	18	54	1.67
5327049--5327318	141	1.9	140	80	5	312	20	14	14	50	1.77
5327076--5327375	141	2.1	140	78	7	297	20	15	13	51	1.77
5327842--5328118	141	2.0	141	80	1	313	17	16	14	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5327928--5328246	177	1.8	177	84	4	437	15	14	15	54	1.72
5327842--5328258	71	5.9	70	70	8	184	16	16	13	52	1.74
5327980--5328363	177	2.2	177	80	5	420	16	15	14	53	1.74
5327954--5328397	212	2.1	211	79	6	461	16	15	15	52	1.75
5326912--5328614	800	2.1	797	89	1	2593	18	17	13	50	1.77
5330053--5330361	142	2.2	141	79	4	336	16	21	14	48	1.81
5330419--5330508	37	2.5	37	73	8	87	16	17	16	48	1.81
5330750--5330995	106	2.3	107	78	11	232	18	16	12	52	1.74
5330841--5330995	71	2.2	70	82	5	179	19	15	14	50	1.77
5331140--5331226	39	2.2	40	93	4	149	19	20	8	51	1.72
5331253--5331455	71	2.9	70	76	8	189	19	13	15	51	1.76
5331886--5331951	29	2.3	29	78	5	80	22	18	13	45	1.84
5332662--5332695	17	1.9	18	94	5	61	11	14	11	61	1.56
5332960--5333112	69	2.2	70	82	3	184	19	15	11	53	1.72
5333014--5333114	34	2.9	34	75	8	96	22	15	8	52	1.71
5332672--5349502	35	480.5	35	67	13	1937	18	17	13	50	1.78
5333178--5333542	177	2.1	175	78	3	374	17	18	13	50	1.78
5334102--5334433	106	3.2	103	77	6	292	18	19	12	49	1.78
5333996--5334501	176	2.9	175	73	9	431	19	18	12	49	1.79
5334982--5335070	41	2.1	41	85	6	117	20	16	8	53	1.69
5336334--5336658	71	4.6	71	71	9	184	20	15	12	52	1.74
5336860--5337241	176	2.2	175	78	5	387	17	17	15	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5336935--5337240	141	2.2	140	77	5	303	17	17	15	49	1.80
5337001--5337441	212	2.1	213	80	5	482	17	18	14	49	1.79
5337402--5337481	40	2.0	40	95	0	142	16	18	17	47	1.83
5337847--5337959	37	3.1	37	72	5	97	19	14	12	53	1.71
5338292--5338450	71	2.2	70	82	7	187	20	14	13	51	1.76
5338713--5338800	41	2.1	41	85	0	113	20	17	9	53	1.70
5338755--5339340	71	8.4	68	69	12	246	17	17	14	50	1.78
5338855--5339234	207	1.8	207	80	4	453	16	16	15	51	1.78
5339274--5340043	373	2.1	375	79	6	810	18	19	12	49	1.79
5339853--5340175	176	1.8	175	83	10	428	21	18	11	48	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109