genome.fa.s35.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  41  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6619330--6619663	61	5.6	58	79	11	275	36	11	5	45	1.66
6619512--6619687	61	2.9	61	84	4	169	36	11	5	45	1.65
6620273--6620337	24	2.6	26	81	13	84	58	13	1	26	1.45
6629513--6629553	16	2.5	17	84	7	50	39	0	0	60	0.96
6629640--6629695	27	2.2	26	79	14	64	51	3	0	44	1.18
6638197--6638241	6	7.5	6	92	0	72	17	26	2	53	1.56
6638770--6638810	3	13.7	3	100	0	82	68	0	0	31	0.90
6640212--6640260	15	3.3	15	77	8	55	24	0	4	71	1.03
6643109--6643159	21	2.4	21	80	6	59	58	1	3	35	1.28
6650175--6650225	24	2.1	25	85	3	68	43	0	3	52	1.19
6650410--6650469	28	2.0	31	84	9	81	50	1	0	48	1.11
6650662--6650743	23	3.5	23	75	6	83	53	2	3	40	1.32
6650763--6650802	20	2.0	21	90	5	64	65	17	0	17	1.28
6652068--6652118	21	2.5	20	75	15	50	45	1	0	52	1.12
6655536--6655620	45	1.9	44	83	11	111	45	0	14	40	1.44
6655675--6655740	27	2.3	31	87	10	95	53	0	1	45	1.09
6655670--6655719	10	5.4	10	75	15	54	52	0	0	48	1.00
6656584--6656683	29	3.4	29	81	1	110	30	8	6	56	1.52
6658554--6658596	17	2.6	17	85	14	63	74	2	0	23	0.93
6659137--6659254	34	3.4	33	76	6	110	41	5	6	46	1.52
6659206--6659256	17	2.9	17	82	5	57	41	5	3	49	1.45
6659943--6659972	12	2.5	12	88	0	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6660015--6660039	12	2.1	12	100	0	50	56	0	0	44	0.99
6660087--6660122	15	2.3	15	90	4	54	55	0	0	44	0.99
6661607--6661632	6	4.3	6	100	0	52	0	15	0	84	0.62
6673100--6673136	2	18.5	2	94	0	65	51	2	0	45	1.15
6675224--6675293	12	5.1	14	76	15	58	0	21	2	75	0.93
6675224--6675298	4	19.0	4	73	20	52	0	22	2	74	0.94
6675240--6675298	22	2.8	21	78	14	59	0	22	3	74	0.96
6681159--6681189	2	15.5	2	100	0	62	51	0	48	0	1.00
6690585--6690627	12	3.4	13	81	15	54	48	2	0	48	1.14
6692564--6692606	17	2.4	17	84	7	50	69	2	0	27	1.00
6692561--6692623	27	2.3	27	83	5	74	66	1	1	30	1.10
6692627--6692721	25	3.6	25	67	20	59	51	1	0	47	1.07
6692662--6692732	15	4.8	15	72	16	58	50	1	0	47	1.09
6692624--6692717	29	3.3	28	77	14	86	53	1	0	45	1.07
6709991--6710276	144	2.0	144	95	0	509	39	17	19	24	1.92
6722727--6722759	2	16.5	2	100	0	66	51	0	0	48	1.00
6724516--6724638	31	4.0	30	77	17	121	50	0	1	47	1.10
6724598--6724650	23	2.2	23	90	6	79	43	0	1	54	1.11
6724482--6724652	26	7.5	22	67	20	66	47	0	1	50	1.11
6725236--6725299	29	2.3	29	81	7	80	32	6	0	60	1.21
6725529--6725564	18	1.9	19	88	5	56	44	0	2	52	1.15
6726302--6726340	11	3.5	11	83	13	53	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6727188--6727245	30	2.0	29	83	6	73	37	3	3	55	1.34
6729218--6729258	17	2.4	18	80	12	50	63	4	0	31	1.15
6731263--6731296	6	5.7	6	92	0	59	0	47	2	50	1.16
6734009--6734053	23	1.9	24	86	4	65	55	0	2	42	1.12
6738007--6738032	2	13.0	2	100	0	52	50	0	0	50	1.00
6741711--6741823	57	2.0	57	94	0	199	37	15	10	37	1.82
6747860--6747907	25	1.9	25	91	0	78	29	25	14	31	1.95
6747862--6747915	25	2.2	25	82	0	63	31	27	12	27	1.93
6750255--6750287	13	2.5	14	85	14	52	57	0	0	42	0.98
6756994--6757121	35	3.7	35	74	8	109	51	6	1	40	1.36
6756994--6757067	17	4.1	17	72	11	51	56	8	0	35	1.29
6757026--6757073	20	2.5	19	73	6	51	62	8	0	29	1.24
6756989--6757121	69	1.9	69	83	6	171	49	6	1	42	1.38
6757194--6757233	20	2.0	20	90	0	62	47	7	2	42	1.45
6757198--6757285	34	2.6	34	73	10	90	43	5	5	45	1.51
6765834--6765863	14	2.1	14	100	0	60	26	20	20	33	1.97
6766634--6766760	42	3.0	42	96	0	227	31	20	12	35	1.90
6771642--6771714	35	2.1	35	89	0	110	47	6	20	24	1.74
6773946--6774012	25	2.6	25	80	2	62	44	0	1	53	1.09
6774004--6774050	23	2.1	23	84	4	60	51	0	2	46	1.13
6774722--6774789	34	2.0	35	82	8	86	51	0	0	48	1.00
6775447--6775489	16	3.0	14	80	12	52	67	0	2	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6775471--6775522	20	2.5	20	87	9	68	65	0	0	34	0.93
6775471--6775531	21	2.8	22	82	9	72	65	0	0	34	0.93
6779373--6779502	65	2.0	65	95	0	233	18	19	12	50	1.78
6785131--6785385	126	2.0	126	93	1	440	24	8	23	43	1.82
6787740--6787867	65	2.0	65	89	6	197	44	17	10	27	1.82
6790871--6790989	41	3.0	42	90	6	176	31	21	12	34	1.91
6795890--6795962	35	2.1	35	89	0	110	47	6	20	24	1.74
6798286--6798332	23	2.1	23	84	4	60	51	0	2	46	1.13
6799038--6799080	20	2.3	18	84	8	50	48	0	0	51	1.00
6799001--6799107	48	2.2	49	80	12	116	50	0	0	48	1.07
6799763--6799805	16	3.0	14	80	12	52	67	0	2	30	1.03
6799763--6799812	15	3.5	14	81	10	57	66	0	2	32	1.03
6799787--6799846	20	2.8	21	82	14	70	65	0	0	35	0.93
6803679--6803808	65	2.0	65	95	0	233	18	19	12	50	1.78
6809420--6809672	125	2.0	125	93	1	436	25	9	22	42	1.83
6812041--6812168	65	2.0	65	92	3	213	45	17	10	26	1.81
6812646--6812681	17	2.1	17	100	0	72	33	16	11	38	1.84
6814838--6814884	19	2.5	19	79	6	51	61	0	2	36	1.08
6815297--6815327	16	1.9	16	100	0	62	32	0	0	67	0.91
6818744--6818799	29	1.9	29	82	7	69	55	8	0	35	1.31
6826320--6826383	26	2.5	27	80	12	82	45	9	1	43	1.45
6826450--6826491	21	2.0	21	90	0	66	66	14	0	19	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6826803--6826835	15	2.1	17	88	11	52	0	30	0	69	0.88
6826969--6827035	31	2.2	31	94	0	116	58	16	4	20	1.56
6827038--6827073	12	2.8	13	91	4	56	52	8	2	36	1.46
6827038--6827071	13	2.6	14	86	13	54	55	5	2	35	1.39
6827459--6827502	15	2.9	15	82	0	52	52	0	13	34	1.41
6829858--6829906	18	2.7	19	76	20	59	4	30	2	63	1.24
6831396--6831432	15	2.4	16	82	17	51	62	0	5	32	1.18
6833834--6833887	20	2.7	20	82	11	65	46	0	1	51	1.11
6837910--6837969	23	2.8	20	82	12	59	61	0	1	36	1.06
6840037--6840088	11	4.5	11	77	15	52	57	0	0	42	0.98
6839974--6840276	118	2.5	124	80	13	376	47	5	7	39	1.55
6840671--6840741	25	2.9	25	77	8	83	50	0	1	47	1.09
6841891--6842112	64	3.5	63	71	16	181	38	7	5	48	1.55
6841879--6842087	64	3.3	62	75	12	187	38	7	6	47	1.57
6840280--6842141	967	2.0	933	85	6	2553	40	9	8	41	1.67
6843325--6843410	45	1.9	45	85	0	118	44	15	15	25	1.85
6855117--6855304	95	2.0	95	97	0	358	45	10	6	37	1.66
6859641--6859669	2	14.5	2	100	0	58	0	48	0	51	1.00
6861214--6861268	24	2.4	21	77	16	56	9	23	5	61	1.46
6861221--6861276	24	2.3	24	93	0	94	7	23	5	64	1.40
6864155--6864188	17	2.0	17	100	0	68	11	11	23	52	1.70
6868866--6868898	14	2.4	14	94	0	57	72	0	3	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6870671--6870714	17	2.6	17	85	0	61	59	0	0	40	0.98
6870903--6870941	18	2.2	18	90	0	60	15	5	0	79	0.90
6876519--6876554	17	2.1	17	94	0	63	61	0	0	38	0.96
6878836--6878865	10	2.9	10	95	5	51	90	0	10	0	0.47
6878836--6878862	11	2.5	11	100	0	54	92	0	7	0	0.38
6891885--6891941	25	2.4	24	91	8	91	50	0	5	43	1.24
6894200--6894229	16	1.9	15	93	6	51	0	26	13	60	1.34
6894537--6894561	3	8.3	3	100	0	50	32	36	0	32	1.58
6895760--6895803	22	2.0	22	100	0	88	18	31	4	45	1.69
6898634--6898691	22	2.6	22	73	15	66	1	13	1	82	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109