genome.fa.s35.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  51  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9697565--9697612	19	2.5	20	83	10	55	18	10	0	70	1.15
9698527--9698595	34	2.0	34	83	11	86	37	2	4	55	1.35
9702792--9702833	14	3.1	14	80	13	52	7	0	7	85	0.73
9702793--9702836	21	2.1	21	83	8	54	9	0	6	84	0.79
9704319--9704360	21	2.0	21	86	9	59	11	7	0	80	0.88
9705363--9705409	25	1.9	24	86	4	67	14	10	0	74	1.07
9705379--9705419	21	2.0	21	85	0	55	24	4	0	70	1.06
9713526--9713572	24	2.0	24	83	8	60	55	0	2	42	1.12
9715978--9716018	21	2.0	21	90	0	64	7	2	14	75	1.12
9716617--9716664	24	2.0	25	84	12	64	62	0	22	14	1.32
9717562--9717593	10	3.2	10	95	0	55	34	9	18	37	1.83
9722085--9722143	27	2.2	27	90	6	93	49	5	18	27	1.68
9729276--9729315	19	2.0	20	90	4	64	50	0	5	45	1.23
9747191--9748678	181	8.3	181	78	4	1191	43	7	7	41	1.62
9747194--9748678	360	4.1	356	76	6	1138	43	7	7	41	1.62
9747197--9748506	722	1.8	717	79	5	1521	43	7	8	41	1.62
9747206--9748672	543	2.7	536	80	5	1402	43	7	8	41	1.63
9748707--9750525	181	10.2	180	78	6	1324	43	7	7	42	1.59
9748707--9752421	362	10.3	361	72	12	1781	42	6	7	43	1.58
9749309--9752421	181	17.1	180	71	13	1111	42	6	7	43	1.58
9750628--9751002	130	2.9	131	91	3	578	42	6	5	46	1.51
9750883--9752421	181	8.6	179	78	7	1276	41	6	7	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9751811--9751843	16	2.0	17	94	5	59	48	0	12	39	1.40
9750884--9752282	351	3.9	356	80	6	1444	41	6	7	44	1.57
9752162--9752194	16	2.0	17	88	5	50	51	0	3	45	1.16
9752153--9752210	18	3.3	18	76	13	66	51	5	1	41	1.34
9750883--9752421	532	2.9	528	79	5	1623	41	6	7	44	1.58
9754286--9754318	18	1.9	17	88	11	50	48	6	6	39	1.53
9754454--9754502	18	2.9	16	84	9	53	48	4	4	42	1.40
9753989--9755750	181	9.7	180	81	3	1659	41	8	7	42	1.63
9754020--9755750	361	4.8	361	80	4	1771	41	8	7	42	1.64
9753989--9756486	542	4.7	539	78	7	2347	41	8	8	42	1.63
9755876--9755919	17	2.6	18	82	10	65	47	9	4	38	1.56
9756236--9756275	18	2.3	17	87	12	55	45	2	5	47	1.38
9755795--9756486	180	3.9	180	79	7	723	41	7	8	42	1.63
9756411--9756442	17	1.9	16	93	6	55	50	0	6	43	1.27
9758460--9758687	117	2.0	115	86	1	321	38	7	7	46	1.60
9759589--9759637	24	2.2	22	82	10	55	18	6	20	55	1.64
9760070--9760240	73	2.3	75	75	11	165	18	4	36	40	1.71
9761750--9761806	20	2.9	19	74	5	60	42	0	1	56	1.10
9766658--9766715	17	3.3	18	77	17	61	46	0	0	53	1.00
9766685--9766715	16	2.0	15	93	6	53	51	0	0	48	1.00
9766779--9766868	44	2.1	42	87	8	128	30	7	6	55	1.54
9767159--9767222	30	2.2	30	81	16	80	48	3	7	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9767535--9767577	22	2.0	22	90	0	68	34	2	2	60	1.22
9767571--9767617	22	2.2	22	92	7	80	51	0	0	48	1.00
9767571--9767615	21	2.1	20	88	12	63	51	0	0	48	1.00
9767727--9767780	2	27.0	2	96	0	99	51	0	0	48	1.00
9770313--9770358	2	23.0	2	100	0	92	0	50	0	50	1.00
9775571--9775628	30	1.9	30	85	0	80	37	17	3	41	1.66
9779809--9780123	165	1.9	166	82	0	389	36	11	22	29	1.89
9794110--9794157	16	2.9	17	82	14	57	68	0	0	31	0.90
9794105--9794185	24	3.4	21	78	20	72	72	1	1	24	0.99
9794105--9794170	17	4.1	17	78	11	75	71	1	0	27	0.95
9794963--9795095	3	47.7	3	67	16	72	58	3	4	33	1.33
9794970--9795054	5	16.2	5	80	8	73	58	2	1	37	1.18
9794964--9795062	32	3.0	32	71	19	87	57	2	4	36	1.29
9796913--9796973	7	8.9	7	79	16	58	26	0	1	72	0.94
9796916--9796958	20	2.0	20	86	8	59	23	0	2	74	0.93
9796913--9796975	27	2.3	26	86	5	81	25	0	1	73	0.93
9796926--9796971	22	2.1	22	84	8	58	26	0	0	73	0.83
9796926--9797007	26	3.2	24	74	14	58	24	2	2	70	1.11
9796934--9797019	7	12.0	7	79	16	56	25	3	2	68	1.17
9797064--9797141	26	3.2	25	74	16	74	33	3	1	61	1.22
9797073--9797208	41	3.2	40	81	12	139	30	4	2	62	1.29
9797071--9797214	21	6.6	21	73	13	114	29	4	2	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9797912--9797967	18	3.1	18	76	0	58	19	1	0	78	0.84
9797992--9798053	32	1.9	32	87	12	92	14	6	0	79	0.93
9797990--9798058	16	4.2	16	75	18	54	14	5	0	79	0.90
9797990--9798051	6	9.8	6	77	16	63	14	6	0	79	0.93
9797991--9798068	26	3.0	25	74	10	68	14	7	0	78	0.96
9798081--9798583	58	8.7	58	86	5	628	44	6	11	37	1.66
9798068--9798583	174	3.0	170	87	4	719	45	6	11	37	1.65
9802498--9802572	10	7.6	9	75	18	60	76	0	17	6	1.00
9802496--9802572	21	3.8	20	80	14	86	75	0	16	7	1.03
9802522--9802584	18	3.6	18	78	14	69	79	0	15	4	0.90
9802521--9802580	28	2.2	27	85	8	77	80	0	15	5	0.88
9804263--9804447	41	4.5	41	80	4	194	27	12	19	40	1.88
9804269--9804501	82	2.9	82	81	8	237	26	14	18	39	1.90
9804475--9804683	42	4.9	43	77	10	189	25	13	20	39	1.90
9804374--9804638	42	6.4	41	77	10	236	26	14	20	38	1.91
9804399--9804637	125	1.9	123	83	8	306	27	13	20	39	1.89
9804340--9804683	83	4.1	83	77	12	285	27	13	20	38	1.90
9804870--9804910	14	3.0	13	83	13	55	21	0	2	75	0.92
9804932--9804973	7	5.9	7	81	13	50	28	2	2	66	1.16
9805028--9805089	26	2.4	26	81	7	65	33	4	1	59	1.28
9805013--9805156	20	6.6	21	72	15	114	29	4	2	63	1.29
9805013--9805158	21	6.7	22	73	14	115	29	4	2	63	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9805990--9806016	3	9.0	3	100	0	54	33	0	0	66	0.92
9806054--9806117	10	6.3	10	77	21	62	15	3	0	81	0.82
9806042--9806118	20	4.0	19	78	17	79	15	2	0	81	0.79
9806047--9806122	26	3.1	26	76	12	90	14	3	0	81	0.83
9806044--9806111	26	2.4	29	85	7	97	14	2	0	82	0.79
9806046--9806111	6	10.8	6	80	9	80	15	3	0	81	0.80
9806152--9806248	30	3.2	30	67	16	83	45	8	11	35	1.70
9806135--9806409	58	4.7	58	86	3	367	45	6	11	36	1.67
9807531--9807604	23	3.1	25	69	9	64	48	2	8	40	1.47
9807515--9807608	48	2.0	48	83	6	120	45	3	7	43	1.48
9814521--9814567	2	23.5	2	86	0	58	44	4	4	46	1.42
9816337--9816498	6	25.3	6	69	14	53	73	3	7	16	1.18
9816378--9816442	17	3.7	17	76	11	60	75	0	10	13	1.05
9824172--9824296	59	2.1	59	93	1	214	36	14	20	29	1.92
9826887--9826957	37	1.9	37	100	0	142	19	22	11	46	1.81
9831179--9831205	2	13.5	2	100	0	54	51	0	0	48	1.00
9831909--9831943	9	3.7	9	85	14	52	22	2	0	74	0.95
9831884--9831943	20	2.8	21	85	10	77	25	1	1	71	1.04
9833082--9833146	16	3.8	17	80	9	60	18	1	3	76	0.99
9833116--9833153	19	2.1	18	85	14	51	31	0	2	65	1.06
9833371--9833424	25	2.2	25	83	6	65	20	1	7	70	1.21
9833370--9833425	26	2.2	26	78	12	62	19	1	7	71	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9833980--9834058	23	3.5	22	75	18	65	49	0	3	46	1.19
9834193--9834221	7	4.1	7	100	0	58	31	27	0	41	1.56
9835970--9836584	330	1.9	329	90	1	1000	38	17	9	35	1.82
9849329--9849368	15	2.7	15	84	0	53	45	0	2	52	1.14
9850339--9850384	23	2.0	24	86	4	67	23	10	4	60	1.47
9851818--9851856	17	2.2	18	86	4	53	38	2	2	56	1.27
9854126--9854159	16	2.1	16	88	0	50	35	2	20	41	1.68
9855495--9855557	28	2.2	28	91	5	101	34	1	7	55	1.39
9856969--9857073	52	2.0	52	83	8	135	40	5	5	47	1.51
9857089--9857118	2	15.0	2	92	0	51	46	3	0	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109