genome.fa.s35.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  92  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18466888--18466927	21	1.9	21	94	0	71	27	10	15	47	1.77
18466914--18466963	26	2.0	25	84	4	64	36	4	6	54	1.44
18466937--18466984	23	2.1	23	84	7	62	39	4	6	50	1.47
18473883--18473918	8	4.2	8	86	13	54	44	2	0	52	1.15
18475883--18475925	14	3.1	14	83	6	61	53	11	6	27	1.63
18475883--18475925	13	3.2	13	86	6	59	53	11	6	27	1.63
18475772--18475958	58	3.2	58	74	9	182	51	13	8	26	1.69
18475990--18476024	16	2.2	16	94	0	61	57	14	5	22	1.59
18476004--18476124	40	3.0	39	77	7	125	52	13	7	26	1.66
18475996--18476051	16	3.2	16	77	22	60	53	14	5	26	1.62
18475971--18476124	21	7.7	20	74	13	79	53	12	7	25	1.66
18476004--18476124	21	6.0	21	77	6	133	52	13	7	26	1.66
18476172--18476209	16	2.4	15	87	12	58	73	0	0	26	0.83
18476646--18476713	27	2.7	24	72	18	57	45	0	2	51	1.16
18478953--18479036	44	1.9	44	82	4	107	27	14	25	33	1.94
18480865--18480894	8	3.8	8	100	0	60	10	0	0	90	0.47
18484250--18484321	20	3.6	20	83	7	101	59	6	4	29	1.42
18484250--18484331	40	2.0	41	90	6	132	57	7	6	29	1.50
18484250--18484331	20	4.1	20	81	7	94	57	7	6	29	1.50
18490153--18490217	27	2.5	26	87	5	96	63	0	9	27	1.25
18491582--18491606	13	1.9	13	100	0	50	36	32	32	0	1.58
18494286--18494328	14	3.1	14	83	6	61	53	11	6	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18494286--18494328	13	3.2	13	86	6	59	53	11	6	27	1.63
18494306--18494414	23	5.0	22	69	26	72	58	11	4	24	1.52
18494175--18494354	58	3.0	57	72	11	148	51	13	8	26	1.70
18494330--18494412	34	2.5	33	76	7	87	59	13	4	22	1.53
18494387--18494490	21	5.1	21	79	5	124	52	12	7	26	1.66
18494400--18494478	40	2.0	40	92	0	131	50	13	8	26	1.71
18494538--18494575	16	2.4	15	87	12	58	73	0	0	26	0.83
18502559--18502619	27	2.5	24	75	17	61	60	9	1	27	1.38
18502586--18502644	30	1.9	30	83	13	75	55	11	5	27	1.56
18502559--18502690	57	2.3	57	75	10	135	61	11	2	25	1.41
18502673--18502744	20	3.6	20	83	7	101	59	6	4	29	1.42
18502673--18502754	40	2.0	41	90	6	132	57	7	6	29	1.50
18502673--18502754	20	4.1	20	81	7	94	57	7	6	29	1.50
18508574--18508637	25	2.5	26	92	5	112	62	0	9	28	1.26
18519946--18519995	23	2.1	25	81	7	59	38	12	10	40	1.76
18531471--18531520	26	1.9	26	91	0	82	10	42	10	38	1.72
18539127--18539186	28	2.1	29	84	3	77	33	3	15	48	1.61
18539212--18539248	18	2.0	20	84	10	51	21	8	5	64	1.40
18547421--18547457	18	2.0	20	84	10	51	21	8	5	64	1.40
18551854--18551885	2	16.0	2	100	0	64	50	0	0	50	1.00
18562323--18562363	14	3.0	14	76	20	50	31	51	2	14	1.56
18563398--18563449	24	2.1	25	82	3	61	71	1	3	23	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18563768--18563880	28	4.0	29	79	6	115	49	35	0	14	1.49
18563828--18563876	15	3.4	15	75	11	57	44	40	0	14	1.45
18563871--18563968	28	3.4	28	83	8	126	50	33	0	16	1.46
18563771--18563955	73	2.6	72	79	9	198	48	35	0	15	1.50
18563768--18563966	14	13.9	14	67	17	72	49	34	0	15	1.49
18564006--18564046	15	2.7	15	88	7	57	58	26	0	14	1.37
18563995--18564038	22	2.0	22	90	0	70	52	31	0	15	1.44
18567722--18567771	24	2.1	24	96	0	91	24	16	18	42	1.89
18570480--18570601	45	2.7	46	78	8	142	22	7	12	58	1.59
18573658--18573786	50	2.6	50	76	7	145	31	11	14	41	1.82
18573802--18573855	25	2.1	25	86	10	74	22	9	16	51	1.72
18573750--18573925	71	2.5	69	85	1	235	27	12	16	43	1.84
18573764--18573925	69	2.3	71	83	2	220	28	12	16	41	1.85
18574693--18574845	43	3.6	42	82	7	150	33	13	12	40	1.81
18574731--18574951	86	2.6	86	75	11	193	34	14	10	39	1.81
18574731--18574951	43	5.1	42	73	10	162	34	14	10	39	1.81
18575796--18575841	4	12.0	4	77	9	51	26	4	0	69	1.07
18575797--18575841	11	4.0	11	81	16	56	26	4	0	68	1.08
18577694--18577722	14	2.0	15	93	6	51	51	0	0	48	1.00
18578127--18578161	18	1.9	18	88	0	52	42	11	11	34	1.77
18581177--18581226	24	2.1	24	96	0	91	24	16	18	42	1.89
18583221--18583275	15	3.7	15	74	16	51	23	1	5	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18583956--18584060	44	2.4	45	81	1	131	20	9	14	56	1.66
18583953--18584073	45	2.7	44	77	2	134	20	8	13	57	1.61
18587146--18587285	50	2.8	50	79	6	156	30	10	18	40	1.85
18587295--18587343	25	2.0	25	88	8	73	24	10	14	51	1.73
18587238--18587414	71	2.5	70	85	0	237	28	11	15	44	1.82
18587252--18587414	70	2.3	71	84	1	229	28	12	15	42	1.83
18587685--18587765	32	2.5	30	77	13	81	33	18	22	25	1.97
18588069--18588283	43	5.0	42	73	16	122	34	10	11	42	1.76
18588045--18588175	43	3.1	42	79	11	133	34	9	12	43	1.75
18588180--18588391	43	5.0	42	80	7	144	35	13	10	40	1.79
18588214--18588443	43	5.4	43	78	12	197	34	15	11	38	1.83
18588230--18588443	86	2.5	86	78	6	238	35	15	11	37	1.84
18591086--18591120	18	1.9	18	88	0	52	42	11	11	34	1.77
18594130--18594156	7	3.9	7	100	0	54	44	25	0	29	1.54
18594234--18594403	64	2.7	60	73	13	155	31	10	14	42	1.80
18604211--18604326	33	3.5	33	80	4	110	43	11	18	27	1.84
18604444--18604533	31	2.9	30	80	11	85	45	6	20	27	1.75
18604510--18604571	32	1.9	32	93	0	106	51	11	19	17	1.75
18604533--18604744	65	3.3	65	80	5	207	47	12	20	18	1.81
18604524--18604712	32	5.9	32	71	14	120	48	13	20	18	1.81
18604599--18604774	32	5.5	32	72	7	106	46	13	21	18	1.83
18604542--18604774	129	1.8	129	80	3	281	47	12	21	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18612383--18612436	27	2.0	27	85	0	72	31	3	11	53	1.53
18612408--18612464	21	2.7	21	76	10	62	31	8	10	49	1.68
18612765--18612878	22	5.2	21	73	12	70	37	8	7	45	1.64
18612856--18612899	21	2.1	21	82	0	52	38	9	9	43	1.68
18612972--18613066	22	4.3	22	81	9	104	41	11	3	44	1.57
18612972--18613066	44	2.2	44	86	3	129	41	11	3	44	1.57
18613005--18613112	22	4.9	22	75	13	87	34	9	6	50	1.60
18613174--18613227	22	2.5	22	84	0	63	38	9	7	44	1.65
18613200--18613247	22	2.2	22	81	7	53	35	8	6	50	1.58
18613370--18613419	21	2.3	22	86	10	68	44	10	0	46	1.37
18612980--18613420	194	2.3	193	84	5	568	38	9	4	47	1.58
18613437--18613542	44	2.4	44	88	6	151	37	10	4	47	1.59
18613551--18613598	22	2.2	22	81	7	53	35	8	6	50	1.58
18613193--18613880	351	2.0	351	95	0	1252	37	9	4	48	1.57
18613761--18613875	46	2.6	42	79	8	113	38	8	5	47	1.57
18613798--18613885	22	4.0	22	68	15	58	34	6	5	53	1.51
18613936--18614002	22	3.0	22	75	0	62	35	11	4	47	1.61
18614305--18614490	22	8.5	22	74	3	97	38	5	6	49	1.53
18614511--18614898	22	17.9	22	67	10	73	36	7	5	50	1.54
18614582--18614624	19	2.3	19	79	0	50	37	6	6	48	1.57
18614621--18614704	44	1.9	44	80	9	100	29	8	3	58	1.44
18614709--18614807	43	2.3	44	82	1	119	37	8	6	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18614727--18614841	43	2.7	43	81	1	122	38	5	6	49	1.52
18614973--18615040	22	3.1	22	84	0	73	39	8	1	50	1.43
18615203--18615250	22	2.2	22	85	7	62	31	14	4	50	1.62
18617625--18617664	17	2.4	16	79	4	53	55	2	0	42	1.13
18622300--18622324	12	2.1	12	100	0	50	36	8	8	48	1.62
18629783--18629847	31	2.1	31	88	0	94	32	4	32	30	1.78
18637083--18637118	3	12.0	3	100	0	72	66	0	0	33	0.92
18643236--18644785	356	4.3	357	87	1	1966	36	11	14	37	1.83
18643179--18644780	713	2.2	713	85	1	2165	37	11	14	37	1.82
18651005--18651047	22	2.0	22	90	0	68	30	11	13	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109