genome.fa.s35.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  79  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15885552--15885596	15	3.0	15	90	0	63	44	0	0	55	0.99
15885557--15885601	15	3.1	15	90	3	65	51	0	0	48	1.00
15885741--15885860	22	5.4	22	71	17	70	15	1	7	75	1.09
15886190--15886214	6	4.2	6	100	0	50	84	0	0	16	0.63
15886774--15886840	20	3.4	19	76	10	62	68	1	2	26	1.12
15887030--15887088	13	4.2	14	76	12	50	35	0	0	64	0.94
15887049--15887079	12	2.5	13	94	5	55	22	0	0	77	0.77
15890880--15890910	11	2.8	11	100	0	62	35	16	9	38	1.81
15892881--15892915	18	1.9	18	94	0	61	42	2	22	31	1.68
15897796--15897842	13	3.6	13	80	8	51	57	2	0	40	1.11
15897765--15897862	14	6.8	15	65	22	50	53	1	0	45	1.07
15897777--15897869	26	3.3	28	72	22	70	55	1	0	43	1.06
15898450--15898502	18	2.8	19	77	8	56	50	0	0	49	1.00
15899578--15899636	17	3.4	18	71	17	61	66	0	0	33	0.92
15899582--15899652	20	3.8	20	75	21	64	67	0	0	32	0.91
15899584--15899650	34	1.9	35	87	6	100	68	0	0	31	0.90
15899584--15899647	17	3.8	17	72	12	60	68	0	0	31	0.90
15904125--15904167	21	2.0	21	95	0	77	60	6	9	23	1.51
15917752--15917797	2	23.0	2	100	0	92	0	50	0	50	1.00
15951448--15951484	19	1.9	19	88	0	56	45	0	0	54	1.00
15954754--15954800	15	3.1	15	74	17	51	57	0	0	42	0.98
15957500--15957552	19	2.8	19	80	5	63	56	1	7	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15957503--15957575	29	2.5	29	86	0	92	54	8	6	30	1.56
15958913--15958967	22	2.3	23	84	12	67	45	3	0	50	1.19
15958900--15958948	22	2.3	22	89	3	73	55	6	2	36	1.37
15959884--15959939	23	2.4	23	93	0	103	50	3	12	33	1.58
15971316--15971379	30	2.2	30	88	8	96	32	3	3	60	1.28
15971364--15971402	20	2.0	19	85	5	51	56	0	0	43	0.99
15988911--15988992	42	2.0	41	90	2	128	59	0	3	36	1.15
15989911--15989986	32	2.4	33	78	10	95	13	15	11	59	1.62
16011372--16011426	25	2.2	26	75	21	64	21	3	3	70	1.18
16016135--16016167	11	3.0	11	95	0	57	60	9	12	18	1.57
16016143--16016421	113	2.5	112	82	2	326	42	9	12	35	1.75
16016404--16016440	16	2.2	17	95	4	67	35	5	24	35	1.78
16024877--16024948	30	2.4	30	85	0	108	50	20	4	25	1.66
16027480--16027583	19	5.5	19	73	4	84	20	0	35	43	1.58
16027525--16027583	7	9.3	7	74	20	58	15	1	40	42	1.57
16027526--16027583	12	4.7	12	76	16	55	15	1	39	43	1.57
16027482--16027583	38	2.7	37	81	6	123	19	0	35	44	1.58
16038310--16038355	3	15.3	3	95	0	83	30	0	2	67	1.03
16044421--16044445	2	12.5	2	100	0	50	48	0	0	52	1.00
16044680--16044736	4	14.5	4	87	3	71	49	19	3	28	1.65
16050687--16050720	17	2.1	16	88	5	50	2	14	14	67	1.34
16052939--16052989	26	2.0	26	96	0	93	60	5	9	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16058920--16058951	2	16.5	2	93	6	57	53	0	0	46	1.00
16064170--16064227	18	3.2	18	71	9	55	31	1	0	67	1.01
16064335--16064388	27	2.1	26	86	13	76	50	0	1	48	1.11
16064658--16064685	5	5.6	5	100	0	56	0	42	0	57	0.99
16068450--16068498	23	2.2	23	88	3	73	38	6	36	18	1.76
16068593--16068620	6	4.7	6	100	0	56	17	0	0	82	0.68
16076809--16076837	2	14.5	2	100	0	58	48	0	51	0	1.00
16078556--16078586	7	4.4	7	100	0	62	0	12	25	61	1.32
16079263--16079298	2	18.0	2	94	0	63	50	2	0	47	1.15
16079913--16079952	18	2.3	17	86	4	53	77	0	7	15	0.98
16083827--16083858	10	3.1	10	95	4	55	28	0	0	71	0.86
16086257--16086493	118	2.0	115	82	4	287	37	12	5	43	1.67
16086257--16086473	59	3.7	59	82	6	244	36	13	5	43	1.68
16086490--16086573	6	13.7	6	73	17	66	79	1	3	15	0.92
16086490--16086554	5	12.8	5	76	12	62	78	0	4	16	0.91
16086490--16086573	17	5.0	16	76	18	73	79	1	3	15	0.92
16086878--16086920	14	2.9	15	76	16	54	0	41	0	58	0.98
16087529--16087675	4	35.5	4	68	18	79	63	1	2	31	1.16
16087521--16087682	10	15.4	10	71	20	93	63	1	3	31	1.20
16087521--16087682	42	4.1	39	77	20	135	63	1	3	31	1.20
16087552--16087649	14	7.1	14	71	21	64	62	2	2	33	1.18
16087553--16087675	27	4.4	29	69	16	80	63	1	2	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16087707--16087770	22	2.9	23	75	15	64	76	1	1	20	0.95
16087715--16087761	6	7.0	7	83	11	55	74	2	2	21	1.03
16087912--16087939	10	2.8	10	100	0	56	7	7	0	85	0.73
16087961--16088502	41	13.0	41	82	7	497	40	20	14	24	1.90
16088018--16088421	126	3.2	124	84	6	514	40	21	15	23	1.91
16087961--16088421	84	5.5	83	84	5	538	39	20	15	24	1.91
16088091--16088509	81	5.1	81	82	4	315	39	22	14	24	1.91
16088808--16088889	43	1.9	42	85	7	112	35	18	10	35	1.86
16089068--16089128	22	2.7	23	85	10	90	36	19	6	37	1.78
16090388--16090443	30	1.9	30	89	10	89	10	16	0	73	1.10
16090385--16090439	20	2.9	19	75	17	60	9	14	0	76	1.02
16094379--16094734	117	3.0	117	84	6	445	37	11	7	44	1.68
16094381--16094713	59	5.7	59	86	3	451	36	12	6	44	1.68
16094731--16094817	6	13.7	6	77	10	84	80	1	3	14	0.90
16094731--16094817	39	2.3	37	84	9	104	80	1	3	14	0.90
16095690--16095786	48	2.0	50	84	13	130	71	3	5	20	1.19
16095762--16095921	4	40.0	4	71	18	95	65	1	1	31	1.11
16095762--16095912	10	14.7	10	66	15	58	65	1	1	31	1.12
16095770--16095917	14	9.7	15	74	19	85	64	1	2	31	1.13
16095762--16095928	46	3.5	48	75	14	143	65	1	1	31	1.13
16095762--16095928	42	4.4	37	78	16	141	65	1	1	31	1.13
16095963--16096007	7	6.6	7	90	10	67	75	0	2	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16095957--16096013	27	2.0	29	83	10	73	75	0	1	22	0.90
16098451--16098526	29	2.6	29	81	6	82	18	0	32	48	1.48
16098456--16098584	30	4.5	28	71	15	77	22	1	28	47	1.60
16098651--16098734	16	5.2	16	83	8	100	20	1	28	50	1.56
16098639--16098728	32	2.8	31	84	5	117	22	1	28	47	1.58
16098936--16098966	16	1.9	16	93	0	53	35	0	9	54	1.33
16099889--16099951	32	2.0	32	81	12	76	9	1	23	65	1.31
16103769--16103839	32	2.2	32	82	2	79	64	1	7	26	1.27
16104046--16104083	19	2.1	18	85	14	51	55	0	0	44	0.99
16107550--16107593	20	2.3	19	84	7	61	54	0	2	43	1.12
16107658--16107694	15	2.2	18	86	13	53	21	16	2	59	1.49
16109680--16109710	2	15.5	2	100	0	62	51	0	0	48	1.00
16109978--16110054	40	1.9	40	87	10	113	48	0	2	49	1.15
16109994--16110054	20	3.0	19	69	11	50	49	0	1	49	1.10
16111967--16112036	6	11.5	6	80	10	54	21	0	0	78	0.75
16111988--16112113	3	39.7	3	72	15	69	30	3	0	66	1.07
16112052--16112112	23	2.6	24	82	10	65	31	3	0	65	1.09
16112055--16112126	31	2.3	29	78	17	74	25	5	0	69	1.10
16112854--16112897	13	3.5	13	87	3	63	25	0	2	72	0.96
16112914--16112949	11	3.4	11	88	7	56	72	0	5	22	1.05
16117249--16117345	40	2.4	39	83	6	106	43	12	11	32	1.78
16122868--16122892	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16123712--16123737	2	13.0	2	100	0	52	50	0	0	50	1.00
16124340--16124383	23	2.0	22	86	4	61	50	6	6	36	1.56
16125730--16125776	15	3.1	15	93	0	76	53	2	4	40	1.32
16128645--16128696	15	3.4	15	78	5	50	51	1	0	46	1.12
16136468--16136492	1	25.0	1	100	0	50	100	0	0	0	0.00
16137244--16137318	39	1.9	39	91	0	123	22	40	9	28	1.85
16139640--16139706	30	2.2	30	84	7	82	52	4	4	38	1.42
16146259--16146304	22	2.2	20	84	7	56	54	0	4	41	1.20
16148176--16148262	45	1.9	45	80	0	102	55	10	6	27	1.59
16148242--16148295	20	2.5	22	88	8	76	57	9	3	29	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109