genome.fa.s35.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  71  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14213843--14213971	20	6.4	21	71	20	89	51	1	2	44	1.23
14213843--14213928	21	4.5	17	77	21	66	53	1	0	45	1.07
14213877--14213918	21	2.0	21	95	0	75	54	0	0	45	0.99
14214430--14214484	18	3.2	17	89	5	76	16	1	3	78	0.98
14214440--14214481	13	3.3	12	81	18	50	14	2	2	80	0.90
14214449--14214494	23	2.0	24	82	4	58	19	6	2	71	1.18
14214430--14214510	34	2.4	34	80	13	80	17	4	2	75	1.09
14214430--14214514	31	2.6	32	78	14	84	17	4	2	75	1.08
14218630--14218677	25	1.9	25	87	8	71	68	0	2	29	1.01
14221226--14221265	19	2.1	19	100	0	80	20	10	15	55	1.68
14221371--14221436	34	1.9	35	87	3	98	16	7	3	72	1.20
14222413--14222467	21	2.7	21	82	2	76	47	20	18	14	1.83
14231257--14231344	39	2.2	40	78	13	103	45	14	7	31	1.74
14235933--14235964	16	2.0	16	100	0	64	43	12	0	43	1.42
14237281--14237310	15	2.0	15	93	0	51	56	0	0	43	0.99
14241616--14241662	6	7.8	6	82	0	58	31	14	6	46	1.70
14247416--14247441	2	13.0	2	100	0	52	50	0	0	50	1.00
14248042--14248079	2	19.0	2	88	0	58	44	0	2	52	1.14
14248042--14248088	12	3.9	12	91	0	58	42	0	6	51	1.27
14248149--14248181	17	1.9	17	88	11	50	48	3	0	48	1.17
14248475--14248522	17	2.9	16	84	3	60	81	4	12	2	0.93
14248475--14248522	8	5.9	8	82	4	60	81	4	12	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14251119--14251326	112	1.9	111	80	7	242	38	3	15	42	1.64
14251293--14251350	25	2.3	25	85	8	73	43	3	10	43	1.55
14251717--14251759	18	2.4	18	80	3	52	76	2	4	16	1.05
14252258--14252301	23	1.9	23	85	0	61	70	4	15	9	1.30
14253894--14253921	14	2.0	14	100	0	56	0	0	21	78	0.75
14254401--14254451	19	2.8	19	80	11	63	29	3	0	66	1.09
14254406--14254453	12	3.8	12	77	22	53	29	2	0	68	1.01
14254406--14254447	15	2.7	15	81	3	57	28	2	0	69	1.01
14256259--14256300	13	3.2	13	77	9	50	16	2	7	73	1.15
14256719--14256838	54	2.2	55	83	4	154	58	6	11	23	1.57
14260726--14260789	23	2.9	21	86	11	83	73	1	18	6	1.12
14260727--14260810	15	5.7	14	75	19	64	73	1	17	7	1.12
14260764--14260810	15	3.2	14	91	8	76	76	0	14	8	1.01
14260714--14260821	21	5.4	21	69	15	61	74	0	18	6	1.09
14261940--14262043	14	8.5	13	63	30	52	40	11	14	33	1.82
14261948--14262107	83	1.9	83	88	2	241	40	10	15	33	1.82
14262057--14262198	25	6.0	25	74	17	142	36	8	16	38	1.79
14262057--14262337	151	1.9	152	87	5	426	38	9	14	38	1.79
14262203--14262342	25	6.0	24	68	14	87	39	10	12	37	1.77
14262201--14262263	21	2.7	23	74	13	67	38	9	15	36	1.81
14262057--14262337	71	3.8	74	81	9	317	38	9	14	38	1.79
14262807--14263075	44	6.2	44	80	5	246	20	10	20	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14262807--14263066	41	6.0	44	82	4	219	20	11	20	48	1.79
14262820--14263066	89	2.9	88	80	7	222	19	11	20	48	1.80
14264420--14264577	54	3.0	52	80	6	183	55	8	9	27	1.60
14264447--14264611	52	3.1	51	81	5	161	50	7	12	28	1.68
14264634--14264662	8	3.8	8	90	9	51	86	0	0	13	0.58
14272462--14272502	21	1.9	22	85	5	57	21	2	12	63	1.40
14272467--14272510	21	2.1	21	82	0	52	22	2	11	63	1.38
14272774--14272818	18	2.5	19	85	10	67	60	0	22	17	1.37
14273459--14273506	21	2.2	22	78	14	55	27	2	4	66	1.21
14289380--14289418	10	3.8	10	86	3	51	41	0	23	35	1.55
14294898--14294948	22	2.3	22	83	6	59	27	9	23	39	1.86
14295354--14295580	18	12.7	18	76	6	174	40	12	17	29	1.86
14295329--14295655	36	9.1	35	73	12	118	40	13	16	30	1.86
14295342--14295460	45	2.7	44	74	10	107	38	10	16	33	1.84
14295300--14295495	108	1.8	108	83	4	261	38	12	16	32	1.86
14295416--14295616	71	2.8	71	77	6	190	41	15	14	28	1.87
14295409--14295699	18	16.3	18	75	6	144	41	14	14	29	1.86
14295560--14295661	35	2.9	35	79	8	98	42	16	11	29	1.84
14295623--14295725	34	2.9	35	78	5	109	40	12	14	32	1.84
14295701--14295755	18	2.9	18	83	5	65	30	10	21	36	1.88
14299488--14299527	18	2.2	18	86	0	53	32	0	32	35	1.58
14306789--14306869	26	2.8	28	74	14	85	69	1	3	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14306805--14306871	23	2.9	24	75	16	61	68	0	2	28	1.04
14306787--14306871	27	3.2	25	72	22	66	70	1	3	24	1.10
14307082--14307134	19	2.9	18	78	10	54	60	0	1	37	1.08
14312802--14312862	29	2.1	29	100	0	122	50	6	13	29	1.66
14313191--14313232	3	14.0	3	100	0	84	33	0	0	66	0.92
14314098--14314201	7	13.9	7	70	19	59	17	2	2	76	1.02
14314099--14314200	11	8.5	11	68	16	53	16	2	2	77	1.02
14314129--14314200	27	2.6	26	79	14	72	18	2	2	76	1.03
14314170--14314209	19	2.2	18	86	4	53	17	5	0	77	0.94
14314167--14314209	18	2.4	17	81	11	50	18	4	0	76	0.95
14314148--14314210	24	2.7	23	72	18	58	20	4	0	74	0.99
14315530--14315560	14	2.2	14	100	0	62	22	0	19	58	1.40
14316517--14316564	22	2.1	23	85	11	64	58	2	0	39	1.10
14319975--14320017	14	3.1	14	77	16	54	46	0	0	53	1.00
14319978--14320012	17	2.0	18	88	5	54	42	0	0	57	0.99
14326608--14326638	16	2.0	16	93	6	55	29	0	0	70	0.87
14326666--14326710	20	2.2	20	88	7	65	15	11	0	73	1.10
14327203--14327277	30	2.5	30	78	12	82	36	9	6	48	1.62
14327499--14327531	16	2.1	15	94	5	57	42	0	0	57	0.98
14327675--14327710	18	2.0	18	88	0	54	11	5	38	44	1.63
14327752--14327823	33	2.2	32	85	2	99	13	2	38	44	1.59
14327930--14327981	23	2.3	23	78	15	63	9	0	40	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14327942--14327975	18	1.9	17	94	5	59	5	0	47	47	1.26
14327791--14328173	201	1.9	203	85	4	542	16	2	36	45	1.59
14327960--14328083	53	2.3	54	75	12	130	15	2	34	47	1.58
14328060--14328140	32	2.6	30	77	13	83	17	0	34	48	1.48
14328333--14328375	18	2.4	18	84	0	59	9	0	41	48	1.35
14328352--14328421	33	2.1	33	81	5	79	20	1	30	48	1.58
14332830--14332878	10	4.7	10	75	9	53	32	6	14	46	1.69
14332836--14332907	30	2.7	26	76	19	76	33	8	13	44	1.74
14332818--14332924	32	3.3	32	88	7	155	36	11	10	42	1.75
14332907--14332947	10	4.3	10	84	6	50	51	17	0	31	1.46
14332905--14332955	6	8.8	6	82	8	70	50	15	0	33	1.44
14332913--14332953	16	2.6	16	100	0	82	51	17	0	31	1.46
14333001--14333043	4	10.8	4	84	0	50	51	9	0	39	1.34
14333001--14333043	6	7.2	6	83	0	50	51	9	0	39	1.34
14333005--14333043	10	3.7	10	80	12	51	51	10	0	38	1.36
14333311--14333353	18	2.4	19	80	11	54	25	4	4	65	1.32
14333353--14333396	14	3.1	14	83	3	61	70	11	2	15	1.26
14333924--14333971	2	24.0	2	86	0	69	43	0	6	50	1.27
14333927--14333980	12	4.7	12	77	9	58	40	0	9	50	1.35
14336688--14336722	2	17.5	2	93	0	61	48	0	2	48	1.16
14336727--14336777	16	3.0	16	88	8	66	31	0	3	64	1.11
14337151--14337198	24	2.0	24	84	8	62	81	2	10	6	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14337766--14337800	11	3.1	11	84	8	52	85	2	8	2	0.79
14337794--14337997	109	1.9	107	96	2	381	56	7	5	29	1.52
14338429--14338501	10	7.6	9	76	17	67	71	4	0	24	1.04
14338430--14338518	9	9.4	9	75	12	54	66	3	0	30	1.08
14338424--14338501	19	4.0	19	77	14	79	70	3	0	25	1.04
14338429--14338501	29	2.5	29	80	8	87	71	4	0	24	1.04
14338438--14338589	10	15.5	10	74	10	109	57	1	0	40	1.12
14338718--14338748	11	2.8	11	95	0	53	51	3	0	45	1.17
14338792--14338898	40	2.7	40	78	8	119	48	5	5	40	1.50
14338921--14338964	21	2.1	21	91	8	72	70	4	2	22	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109