genome.fa.s35.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  66  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13113734--13113839	44	2.4	43	82	4	140	46	6	6	40	1.56
13113734--13113839	22	4.9	22	79	5	117	46	6	6	40	1.56
13114159--13114235	11	7.0	11	65	11	50	50	7	3	37	1.50
13114155--13114243	44	2.0	44	86	4	126	50	6	5	37	1.52
13114159--13114246	22	4.0	22	80	5	97	48	6	5	38	1.53
13120220--13120274	26	2.0	27	86	6	76	41	25	5	27	1.77
13124160--13124203	23	1.9	23	90	0	70	0	38	0	61	0.96
13124709--13124745	11	3.4	11	92	7	58	72	0	2	24	0.97
13124709--13124746	19	2.0	19	90	10	60	73	0	2	23	0.95
13125096--13125396	89	3.4	87	78	8	283	43	16	13	26	1.85
13125093--13125396	44	7.0	43	79	5	272	43	16	13	26	1.85
13147650--13147703	22	2.5	22	87	6	74	48	1	7	42	1.42
13147650--13147718	22	3.2	21	80	10	59	47	2	8	40	1.49
13147738--13147888	22	6.9	22	75	10	78	46	4	13	35	1.64
13147920--13148136	22	9.9	21	72	8	105	46	8	7	37	1.63
13148008--13148142	44	3.1	44	77	7	123	45	8	8	37	1.67
13147988--13148136	66	2.3	66	84	2	183	44	9	8	37	1.68
13148445--13148609	21	7.8	20	70	9	78	49	11	7	31	1.66
13148556--13148608	10	5.0	10	76	13	52	49	9	7	33	1.64
13148570--13148609	10	3.8	11	83	9	57	47	10	5	37	1.59
13148681--13148721	21	2.0	20	86	13	57	58	0	0	41	0.98
13148903--13148940	2	19.0	2	94	0	67	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13152800--13152839	20	2.0	20	100	0	80	10	15	50	25	1.74
13153770--13153833	21	3.0	21	97	0	119	18	18	46	15	1.84
13156854--13156921	10	6.4	10	79	6	64	52	2	2	41	1.31
13156854--13156907	21	2.5	21	85	11	65	57	3	1	37	1.27
13156854--13156899	12	4.1	11	86	11	58	58	4	0	36	1.18
13156865--13156919	21	2.6	21	82	0	65	54	3	3	38	1.36
13157026--13157063	19	2.1	17	90	9	58	23	5	5	65	1.34
13157101--13157167	21	3.3	21	75	12	59	37	1	1	59	1.16
13157097--13157154	30	1.9	30	85	0	80	43	1	0	55	1.10
13157091--13157167	40	1.9	39	84	7	102	40	2	1	55	1.22
13157148--13157179	17	1.9	16	93	6	55	25	0	3	71	1.00
13157244--13157332	25	3.5	25	72	13	74	34	1	0	64	1.01
13157257--13157328	24	3.0	23	78	13	81	33	1	0	65	1.02
13157314--13157371	10	5.8	10	86	8	55	34	0	8	56	1.30
13157326--13157366	20	2.0	21	90	4	66	31	0	9	58	1.31
13159085--13159116	17	1.9	17	93	6	57	9	3	6	81	0.97
13160365--13160390	3	8.7	3	100	0	52	34	0	0	65	0.93
13160735--13160801	15	4.5	15	73	5	55	50	31	1	16	1.54
13160839--13160881	18	2.3	19	88	4	61	41	30	2	25	1.68
13177934--13177979	2	23.0	2	93	0	74	45	0	2	52	1.13
13177930--13177974	22	2.0	22	100	0	90	40	0	4	55	1.20
13181014--13181103	9	10.0	9	70	13	51	45	3	1	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13181032--13181105	18	4.1	17	75	14	60	41	4	1	52	1.28
13180997--13181103	36	3.0	35	81	12	112	42	4	0	51	1.29
13193373--13193447	31	2.4	31	84	4	89	44	5	14	36	1.68
13195263--13195346	42	2.0	42	81	9	100	35	5	9	48	1.60
13195708--13195761	25	2.2	24	84	15	67	74	5	9	11	1.22
13206820--13206899	37	2.2	36	84	2	97	38	1	6	53	1.34
13209958--13209996	19	2.0	20	85	5	53	20	25	7	46	1.77
13210697--13210768	31	2.3	31	85	0	99	30	29	12	27	1.93
13219468--13219788	160	2.0	160	96	0	588	37	13	14	35	1.85
13227660--13229254	358	4.5	357	83	3	1809	37	14	11	36	1.82
13231534--13231576	21	2.0	21	81	0	50	46	25	13	13	1.81
13238055--13238087	12	2.5	13	90	9	50	51	0	3	45	1.16
13242241--13242321	30	2.7	30	81	14	103	30	27	12	29	1.93
13243428--13243690	135	2.0	133	80	5	298	31	11	19	38	1.87
13259878--13261171	357	3.6	354	85	4	1653	37	15	11	35	1.84
13270901--13270929	15	1.9	15	100	0	58	62	6	13	17	1.52
13271209--13272119	470	1.9	465	85	4	1089	44	7	7	40	1.60
13272516--13272560	20	2.3	19	85	11	56	51	6	0	42	1.28
13273757--13273800	18	2.4	17	82	14	52	59	0	0	40	0.98
13273785--13273921	18	8.3	18	62	32	58	47	0	1	51	1.09
13273838--13273946	26	4.3	25	75	15	107	48	0	0	51	1.00
13273851--13273943	32	2.9	32	76	17	95	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13273847--13273921	15	4.6	17	70	18	61	48	0	0	52	1.00
13277788--13277949	63	2.6	63	80	5	175	34	14	9	40	1.80
13278508--13278570	25	2.6	24	80	5	65	22	0	22	55	1.44
13280685--13280723	20	2.0	20	100	0	78	25	15	7	51	1.70
13282149--13282187	2	19.5	2	86	0	51	48	2	0	48	1.15
13282149--13282192	22	2.0	22	90	0	70	50	4	0	45	1.22
13284380--13284478	51	1.9	51	89	4	155	50	9	3	37	1.50
13285712--13285744	15	2.2	15	89	10	50	33	0	0	66	0.92
13287879--13287942	29	2.2	29	86	13	89	32	1	1	64	1.13
13288274--13288330	31	1.9	29	82	10	71	45	5	5	43	1.49
13288628--13288696	33	2.1	32	86	2	93	53	10	1	34	1.44
13288959--13289077	32	3.8	30	74	11	96	39	4	5	50	1.46
13288978--13289071	32	2.9	31	78	9	100	40	5	5	48	1.48
13289867--13289912	23	2.0	24	82	4	58	50	4	4	41	1.42
13295067--13295097	15	2.1	15	100	0	62	48	0	12	38	1.42
13295215--13295286	30	2.3	30	90	4	108	44	1	15	38	1.55
13295230--13295332	30	3.5	31	79	9	90	46	1	15	35	1.57
13295347--13295382	2	18.5	2	94	5	65	50	0	0	50	1.00
13297721--13297835	59	1.9	60	80	5	135	34	11	6	46	1.67
13297810--13297852	14	2.9	15	86	6	52	34	2	6	55	1.39
13297816--13297860	15	3.0	14	81	12	54	37	2	6	53	1.40
13297816--13297936	58	2.1	57	83	12	147	34	8	4	52	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13297971--13298064	31	3.2	30	63	25	74	36	9	6	47	1.62
13297712--13298064	129	2.7	128	86	5	487	34	10	6	48	1.63
13297964--13298092	57	2.3	54	88	5	177	33	8	5	52	1.55
13298161--13298204	3	14.7	3	90	0	70	70	2	0	27	0.99
13300458--13300714	44	5.9	44	75	10	174	45	16	14	22	1.84
13300443--13300690	129	1.9	130	79	5	279	44	16	15	23	1.86
13300611--13300717	46	2.3	48	85	7	150	56	14	9	20	1.65
13300698--13300749	26	2.0	26	100	0	104	53	15	11	19	1.71
13300731--13301037	42	7.1	43	79	8	157	47	20	10	21	1.80
13301379--13301460	43	1.9	43	82	5	103	35	10	10	42	1.75
13301504--13301549	21	2.2	21	92	3	76	36	19	8	34	1.83
13302777--13302811	9	3.9	9	84	0	52	8	2	2	85	0.79
13305669--13305707	17	2.2	18	90	4	62	51	5	20	23	1.67
13306826--13306963	57	2.4	56	75	14	140	35	12	7	44	1.70
13306945--13306987	22	2.0	22	100	0	86	23	13	4	58	1.55
13306967--13307204	129	1.8	126	88	6	361	34	11	5	47	1.64
13307087--13307217	71	1.9	69	82	7	167	35	10	6	47	1.65
13307284--13307321	3	12.7	3	100	0	76	68	0	0	31	0.90
13311165--13311216	16	3.1	17	75	10	54	23	1	3	71	1.13
13320500--13320647	62	2.4	60	80	10	165	40	7	10	41	1.68
13320538--13320709	62	2.8	63	81	9	194	36	9	10	43	1.73
13320553--13320709	61	2.6	61	81	10	178	36	9	9	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326289--13326315	2	13.5	2	100	0	54	48	0	0	51	1.00
13335594--13335631	3	12.7	3	88	0	58	31	2	2	63	1.22
13336967--13337010	21	2.0	21	86	4	61	18	4	13	63	1.46
13341056--13341089	16	2.1	17	88	5	52	26	11	14	47	1.79
13341754--13342254	43	11.6	42	73	9	280	26	13	12	46	1.80
13341754--13342106	85	4.1	85	80	5	320	28	13	12	46	1.79
13341833--13342106	128	2.1	129	77	3	284	28	13	12	46	1.78
13342087--13342194	51	2.1	50	83	6	137	24	14	10	50	1.73
13343464--13343599	6	24.2	5	88	8	87	25	2	0	70	1.06
13343485--13343599	15	7.9	14	83	12	71	29	1	0	68	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109