genome.fa.s35.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  65  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12976623--12976670	15	3.2	15	80	8	53	79	2	8	10	1.02
12987485--12987535	2	26.0	2	84	4	68	47	1	3	47	1.32
12987944--12987978	16	2.2	16	89	0	52	68	20	0	11	1.20
12999350--12999377	10	2.8	10	100	0	56	32	32	0	35	1.58
13000488--13000843	49	7.3	48	76	9	281	37	15	14	33	1.87
13000483--13000962	147	3.4	143	78	9	432	36	15	13	34	1.87
13000488--13000960	98	5.0	97	73	14	331	36	15	13	34	1.87
13000711--13000960	132	1.9	132	85	3	351	35	14	12	37	1.84
13000868--13000962	49	1.9	49	95	0	172	32	16	16	33	1.92
13001010--13001043	1	34.0	1	87	0	50	0	0	5	94	0.32
13001277--13001326	22	2.3	22	82	0	64	26	18	24	32	1.97
13001208--13001415	105	2.0	106	86	0	292	36	14	19	30	1.91
13001388--13001436	22	2.2	22	88	0	71	32	10	22	34	1.88
13001832--13001892	22	2.8	22	71	0	59	29	16	22	31	1.96
13002265--13002310	18	2.6	18	85	0	56	39	13	23	23	1.90
13002529--13002609	41	2.0	41	92	0	135	32	6	22	39	1.79
13006808--13007144	42	8.1	43	76	11	319	30	13	18	37	1.89
13006821--13007150	83	4.0	81	81	8	273	31	13	18	36	1.90
13007474--13007510	19	1.9	19	88	0	56	70	0	8	21	1.13
13008044--13008121	32	2.5	32	81	6	79	28	6	12	52	1.64
13008071--13008121	17	3.0	17	72	18	52	29	5	11	52	1.61
13008103--13008164	21	3.0	21	80	4	63	32	3	9	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13008124--13008157	13	2.8	12	86	8	50	38	0	2	58	1.13
13008124--13008261	24	5.9	24	73	21	105	34	3	7	54	1.46
13008126--13008248	47	2.7	45	78	15	137	35	3	6	54	1.43
13008103--13008281	24	8.1	20	70	21	74	32	3	8	54	1.50
13008245--13008538	32	9.5	32	75	13	251	28	5	11	54	1.57
13008353--13008392	20	2.0	20	90	0	62	32	7	10	50	1.64
13008240--13008419	84	2.2	83	83	7	231	30	5	10	54	1.56
13008452--13008493	21	2.0	20	86	4	57	28	4	9	57	1.51
13008338--13008536	33	6.2	33	77	10	164	30	5	11	53	1.59
13008240--13008493	116	2.2	115	79	9	259	29	4	11	54	1.56
13008437--13008482	17	2.8	16	77	6	56	32	2	6	58	1.36
13008534--13008627	28	3.3	28	65	15	68	29	1	6	62	1.27
13008821--13008858	20	1.9	20	94	0	67	31	7	7	52	1.59
13008797--13008912	57	2.2	51	81	9	124	32	6	10	50	1.61
13009909--13009975	30	2.2	30	84	10	82	68	5	1	23	1.20
13010798--13010842	21	2.0	23	91	8	76	11	8	2	77	1.07
13011698--13011747	18	2.9	18	73	5	50	40	0	2	58	1.10
13014260--13014310	21	2.4	21	96	0	93	29	7	11	50	1.67
13017427--13017464	2	19.0	2	88	0	58	0	44	2	52	1.14
13019735--13019766	2	16.0	2	100	0	64	50	0	0	50	1.00
13028244--13028276	2	16.5	2	100	0	66	51	0	0	48	1.00
13029454--13029514	19	3.3	19	72	9	72	21	13	9	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13029454--13029522	36	1.9	36	100	0	138	20	17	8	53	1.69
13030307--13030336	6	5.0	6	91	0	51	30	33	20	16	1.94
13038896--13038940	19	2.5	19	79	17	51	71	15	13	0	1.15
13039052--13039099	23	2.1	23	84	7	62	77	8	6	8	1.14
13039136--13039186	22	2.3	22	75	0	57	74	3	13	7	1.18
13039932--13039993	23	2.9	20	77	11	61	70	0	12	16	1.16
13040029--13040065	18	2.1	18	100	0	74	21	27	5	45	1.73
13043162--13043198	18	1.9	18	89	10	56	86	2	8	2	0.76
13043162--13043216	21	2.7	19	86	11	65	83	1	12	1	0.80
13043162--13043204	9	4.4	9	78	16	50	86	2	9	2	0.76
13043162--13043211	15	3.3	15	78	13	50	84	2	12	2	0.80
13043520--13044006	240	2.0	239	97	1	915	29	13	11	44	1.79
13050555--13050609	7	7.9	7	80	11	51	80	1	14	3	0.94
13051528--13051623	33	3.0	31	79	7	95	34	6	15	43	1.72
13051807--13051844	10	3.8	10	80	13	51	55	13	10	21	1.67
13051802--13051843	20	2.1	20	100	0	84	57	14	9	19	1.64
13052562--13052759	62	3.3	59	67	20	142	33	13	14	38	1.84
13053769--13053797	12	2.3	13	94	5	51	68	13	17	0	1.20
13055722--13055794	34	2.1	34	87	0	101	41	17	9	31	1.82
13055730--13055802	34	2.1	35	92	2	121	45	13	10	30	1.78
13057167--13057261	34	2.9	32	76	9	95	18	2	4	74	1.08
13057530--13057554	11	2.3	11	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13057705--13057747	22	2.0	22	86	9	61	13	2	2	81	0.89
13058602--13058642	6	7.3	6	89	10	61	31	0	0	68	0.90
13058599--13058642	21	2.1	21	100	0	88	31	0	0	68	0.90
13058608--13058638	15	2.1	15	100	0	62	32	0	0	67	0.91
13058665--13058708	15	2.8	17	77	19	51	34	0	2	63	1.07
13059933--13059962	15	2.0	15	93	0	51	33	16	13	36	1.88
13059941--13059975	15	2.3	15	90	0	52	34	8	17	40	1.80
13060061--13060156	46	2.1	46	82	9	115	21	15	14	47	1.81
13061267--13061294	14	2.0	14	100	0	56	28	7	21	42	1.79
13061957--13061991	14	2.5	14	100	0	70	22	5	31	40	1.78
13062680--13062747	33	2.1	33	86	2	93	55	13	5	25	1.60
13062709--13062754	20	2.4	19	81	3	56	65	10	2	21	1.35
13062710--13062752	19	2.3	18	80	11	50	65	11	2	20	1.36
13062984--13063036	23	2.3	23	87	6	72	62	9	3	24	1.42
13063081--13063128	24	2.1	23	85	11	64	77	6	2	14	1.06
13064126--13064235	6	18.5	6	79	4	89	60	5	5	28	1.41
13064461--13064616	37	4.2	37	76	8	163	45	19	7	27	1.76
13064461--13064647	76	2.5	76	82	5	202	42	20	8	28	1.81
13064708--13064829	48	2.6	45	83	6	154	40	19	11	28	1.87
13064939--13064964	13	2.0	13	100	0	52	53	7	7	30	1.57
13065961--13066006	22	2.1	21	84	8	56	2	6	8	82	0.91
13066312--13066341	13	2.3	13	94	0	51	0	43	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13066312--13066341	15	2.0	15	93	0	51	0	43	0	56	0.99
13069829--13069889	20	3.2	19	86	9	79	57	11	6	24	1.57
13069905--13069955	19	2.7	19	78	0	57	49	15	5	29	1.68
13070189--13070217	13	2.1	14	93	6	51	72	13	0	13	1.13
13071248--13071337	6	15.2	6	77	2	83	65	3	4	26	1.27
13071832--13071859	6	4.7	6	100	0	56	50	17	0	32	1.47
13075672--13075723	15	3.6	15	80	14	65	42	0	0	57	0.98
13075674--13075750	31	2.5	31	77	18	81	45	2	0	51	1.14
13086881--13086950	35	2.0	35	88	0	104	35	8	4	51	1.52
13086881--13086967	35	2.5	35	80	10	90	32	6	4	56	1.46
13091376--13091420	17	2.6	17	86	6	56	35	22	15	26	1.94
13091419--13091474	18	3.1	18	84	0	67	39	5	10	44	1.62
13091821--13091926	46	2.4	44	80	3	122	44	14	9	32	1.77
13092294--13092344	24	2.1	24	88	0	75	39	33	9	17	1.83
13096614--13096661	21	2.3	21	88	0	78	60	12	6	20	1.54
13097627--13097829	103	2.0	104	85	1	273	35	7	12	43	1.72
13098124--13098161	19	1.9	21	89	10	62	44	10	5	39	1.61
13098292--13098343	19	2.8	18	82	5	68	76	5	1	15	1.05
13099275--13099318	18	2.4	18	85	7	54	9	15	4	70	1.30
13099873--13099912	11	3.5	11	83	6	53	35	0	2	62	1.09
13100359--13100395	2	18.5	2	94	0	65	48	0	0	51	1.00
13104569--13104603	2	17.5	2	100	0	70	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13105313--13105378	31	2.1	31	97	0	123	31	9	10	48	1.69
13111269--13111343	28	2.8	27	76	13	75	32	4	13	50	1.60
13113114--13113196	22	3.8	22	86	0	94	48	3	7	40	1.48
13113114--13113168	11	5.0	11	75	6	58	50	5	3	40	1.43
13113112--13113196	44	1.9	44	85	0	116	47	3	8	41	1.51
13113485--13113609	63	2.0	63	82	6	155	50	1	8	40	1.41
13113475--13113631	85	1.8	85	82	2	199	49	2	8	39	1.46
13113357--13113634	22	13.0	22	71	11	130	46	3	10	38	1.57
13113636--13113707	22	3.3	21	76	5	72	45	8	5	40	1.57
13113619--13113714	44	2.2	43	81	9	113	45	7	6	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109