genome.fa.s35.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  19  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3180065--3180111	21	2.1	23	92	7	80	48	0	0	51	1.00
3180065--3180120	21	2.6	21	88	8	78	51	0	0	48	1.00
3180120--3180157	16	2.4	16	86	8	51	63	0	0	36	0.95
3181360--3181445	43	2.0	42	86	2	118	47	24	12	15	1.80
3193340--3193389	19	2.7	18	79	11	57	18	4	2	76	1.04
3193406--3193476	25	3.0	24	83	8	83	47	2	1	47	1.25
3195972--3196009	14	2.6	15	83	8	51	36	0	0	63	0.95
3195990--3196034	22	2.0	22	91	0	72	44	2	2	51	1.26
3196026--3196054	14	2.0	15	93	6	51	72	0	6	20	1.07
3199959--3200001	22	2.0	22	95	0	77	37	11	6	44	1.68
3204112--3204155	22	2.0	22	91	8	72	45	13	9	31	1.75
3207960--3208003	22	2.0	22	91	8	72	45	13	9	31	1.75
3209496--3209539	22	2.0	22	95	0	79	43	13	11	31	1.80
3209503--3209551	22	2.2	22	82	7	55	48	12	12	26	1.75
3209597--3210118	261	2.0	260	89	1	787	27	18	16	37	1.92
3213513--3213575	25	2.5	25	76	0	72	42	17	20	19	1.89
3213821--3213864	22	2.0	22	91	8	72	47	13	6	31	1.69
3213834--3213876	22	2.0	22	81	9	52	53	11	6	27	1.63
3221935--3222005	29	2.4	29	81	13	83	45	5	5	43	1.51
3222393--3222462	18	3.6	18	71	19	52	35	8	4	51	1.52
3224860--3224898	14	2.8	14	80	0	51	74	0	5	20	1.01
3226091--3226264	59	2.9	58	78	3	168	45	7	16	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3226045--3226264	119	1.8	118	79	5	255	44	8	15	31	1.76
3226406--3226611	62	3.3	62	69	10	179	32	11	16	39	1.84
3226138--3226569	182	2.4	181	77	6	440	40	11	15	33	1.82
3226592--3226704	59	1.9	58	82	10	138	43	8	11	36	1.72
3226378--3226672	123	2.4	123	86	5	384	35	10	16	37	1.82
3226588--3226729	57	2.4	60	80	10	157	41	7	15	35	1.74
3226961--3227025	34	1.9	34	90	0	103	24	18	10	46	1.81
3228104--3228168	27	2.4	26	75	14	69	49	0	1	49	1.10
3229901--3229948	20	2.4	20	82	6	62	45	0	2	52	1.12
3229979--3230020	20	2.0	21	86	4	59	54	0	2	42	1.13
3233765--3233811	23	2.0	23	84	8	60	38	4	0	57	1.18
3243039--3243090	24	2.2	23	89	6	77	55	9	15	19	1.67
3246990--3247052	25	2.5	25	92	0	108	36	17	26	19	1.94
3247117--3247165	24	2.0	25	88	8	73	59	8	12	20	1.58
3247311--3247355	22	2.0	22	86	0	63	42	13	13	31	1.82
3252815--3252842	2	14.0	2	100	0	56	50	0	50	0	1.00
3253664--3253689	12	2.2	12	100	0	52	57	0	42	0	0.98
3264707--3264776	29	2.4	28	83	11	79	74	0	24	1	0.90
3267153--3267230	16	4.8	16	75	12	59	15	1	29	53	1.50
3267152--3267213	17	3.7	15	78	18	61	16	1	25	56	1.49
3267152--3267234	25	3.3	24	72	20	71	15	1	30	53	1.50
3267175--3267241	9	7.8	9	72	12	52	11	1	34	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3267170--3267257	42	2.1	42	82	4	115	14	1	30	53	1.49
3269923--3269987	28	2.5	25	82	9	76	76	0	18	4	0.95
3270148--3270206	24	2.3	27	91	8	97	81	0	18	0	0.69
3270149--3270206	9	6.9	8	76	23	57	82	0	17	0	0.66
3271172--3271229	27	2.2	26	84	6	71	53	1	13	31	1.50
3274046--3274111	27	2.5	28	78	9	75	63	3	0	33	1.10
3279849--3280370	259	2.0	259	99	0	1026	19	22	20	38	1.93
3280302--3280452	82	1.8	82	86	0	221	17	23	20	38	1.93
3281130--3281179	3	16.7	3	100	0	100	66	0	0	34	0.92
3281602--3281873	22	12.4	22	73	8	144	37	9	8	44	1.67
3281719--3281798	11	7.3	11	68	10	56	38	12	6	42	1.68
3281602--3281873	44	6.2	43	75	11	162	37	9	8	44	1.67
3282707--3282779	22	3.3	21	73	7	56	35	4	9	50	1.54
3282826--3282881	22	2.5	22	79	0	67	41	12	3	42	1.60
3283039--3283089	22	2.4	22	93	3	86	39	9	3	47	1.55
3283087--3283133	22	2.1	22	88	0	67	34	8	10	46	1.69
3283164--3283220	22	2.6	22	83	5	71	40	8	1	49	1.44
3295899--3295953	24	2.3	23	75	3	56	40	1	3	54	1.28
3295861--3295963	28	3.6	27	75	16	91	41	1	2	53	1.27
3296586--3296641	19	3.0	20	80	15	66	37	0	1	60	1.07
3298851--3298897	23	2.0	23	100	0	94	34	19	21	25	1.96
3299799--3299850	16	3.2	16	91	0	86	57	0	1	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301499--3301531	17	2.0	17	88	5	50	72	0	0	27	0.85
3306006--3306036	3	10.3	3	92	0	53	67	29	0	3	1.06
3308430--3308710	141	2.0	141	95	0	499	31	9	10	47	1.71
3314164--3314204	11	3.6	11	87	6	64	70	0	0	29	0.87
3314162--3314192	16	2.0	15	93	6	53	70	0	0	29	0.87
3314991--3315025	18	1.9	18	94	0	61	31	17	17	34	1.93
3343176--3343266	6	15.3	6	80	2	94	23	0	7	69	1.14
3343741--3343770	15	2.0	15	93	0	51	13	3	33	50	1.58
3344316--3344367	11	4.4	11	75	17	50	13	0	11	75	1.06
3344292--3344368	18	4.3	17	72	16	66	14	2	9	74	1.17
3344512--3344572	21	3.0	21	84	13	83	32	6	9	50	1.61
3344642--3344675	7	4.7	7	88	3	50	26	8	2	61	1.40
3344670--3344735	25	2.4	28	71	19	68	31	3	10	54	1.50
3344682--3344729	25	2.0	24	91	4	78	35	4	10	50	1.56
3344773--3344843	18	3.9	18	73	14	74	33	5	11	49	1.62
3344808--3344853	16	2.9	16	76	17	51	30	4	15	50	1.63
3344863--3344915	20	2.7	20	74	11	54	35	7	9	47	1.64
3345789--3345868	32	2.5	31	84	11	92	52	0	1	46	1.08
3345790--3345868	16	5.0	16	72	17	58	53	0	1	45	1.08
3347394--3347434	2	20.5	2	100	0	82	48	0	51	0	1.00
3349178--3349225	20	2.4	19	79	6	51	52	2	0	45	1.12
3350984--3351024	20	2.0	20	85	0	55	36	2	12	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351262--3351295	15	2.3	15	94	0	59	29	0	0	70	0.87
3355162--3355200	2	19.5	2	100	0	78	0	51	0	48	1.00
3358107--3358155	24	2.0	25	84	11	66	57	0	2	40	1.10
3358107--3358168	24	2.6	23	82	10	63	50	0	1	48	1.10
3359615--3359654	17	2.4	17	86	0	53	45	2	7	45	1.45
3360053--3360090	14	2.6	15	83	8	51	65	2	5	26	1.27
3360558--3360597	20	1.9	22	85	10	57	60	22	2	15	1.47
3361446--3361597	73	2.1	73	90	2	234	43	9	14	32	1.78
3361681--3361733	18	2.9	18	75	10	54	30	11	20	37	1.88
3361692--3361778	18	5.0	18	70	14	67	33	12	18	35	1.89
3361793--3361840	17	2.8	17	80	0	60	39	12	12	35	1.81
3367839--3368056	103	2.1	103	88	2	341	33	9	12	44	1.75
3367999--3368075	38	2.0	38	82	0	91	35	10	7	46	1.67
3368059--3368086	14	2.0	14	100	0	56	50	0	0	50	1.00
3368246--3368306	29	2.1	30	81	9	72	52	9	4	32	1.56
3369334--3369376	13	3.2	13	81	12	50	4	13	0	81	0.84
3369334--3369376	14	3.1	14	83	9	52	4	13	0	81	0.84
3369344--3369416	20	3.7	20	75	10	60	13	10	2	72	1.22
3369438--3369471	11	3.0	11	86	4	50	67	2	0	29	1.05
3370445--3370485	18	2.3	18	91	0	64	24	17	7	51	1.70
3372937--3372973	7	5.0	7	87	12	56	40	5	0	54	1.24
3373133--3373199	28	2.4	27	80	9	73	40	1	1	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3373159--3373199	15	2.9	15	82	7	50	43	0	0	56	0.99
3374638--3374670	16	2.1	16	94	0	57	42	24	9	24	1.83
3377013--3377077	16	4.2	16	70	7	62	12	0	12	75	1.05
3376989--3377082	44	2.1	43	88	9	136	10	0	10	78	0.96
3376989--3377081	42	2.1	44	84	5	118	10	0	10	78	0.97
3377111--3377141	15	2.1	15	93	0	53	70	0	0	29	0.87
3377152--3377260	55	1.9	58	90	5	179	52	2	6	38	1.42
3377269--3377424	61	2.6	60	84	5	208	45	5	12	36	1.65
3378040--3378083	22	2.0	21	86	4	61	20	9	2	68	1.28
3384529--3384576	21	2.3	21	82	10	62	37	6	14	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109