genome.fa.s35.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  86  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17296394--17296419	11	2.4	11	100	0	52	69	15	0	15	1.20
17296393--17296432	12	3.4	12	86	6	55	70	15	0	15	1.18
17296712--17296844	43	3.1	43	86	5	182	42	17	11	29	1.84
17298533--17298562	15	1.9	16	93	6	53	50	3	13	33	1.58
17299648--17299697	3	16.7	3	100	0	100	34	0	0	66	0.92
17300777--17300968	3	67.3	3	68	19	99	59	4	4	31	1.38
17300781--17300932	56	2.7	55	80	12	150	57	3	4	33	1.37
17302607--17302646	21	1.9	21	100	0	80	52	10	10	27	1.66
17303021--17303050	13	2.3	13	100	0	60	50	13	13	23	1.77
17306411--17306565	75	2.1	75	84	6	197	58	10	2	29	1.45
17306476--17306518	20	2.2	20	86	0	59	55	6	4	32	1.47
17306536--17306659	56	2.2	56	84	2	160	54	12	4	29	1.58
17306686--17306814	24	5.5	24	72	16	101	54	8	3	34	1.47
17306705--17306827	47	2.8	44	79	13	135	53	11	4	30	1.55
17306758--17306822	21	3.2	20	80	6	76	55	10	3	30	1.50
17306758--17306803	20	2.2	20	88	3	65	56	10	2	30	1.46
17306745--17306833	21	4.1	21	72	13	72	55	11	2	31	1.48
17308643--17308667	3	8.3	3	100	0	50	36	32	32	0	1.58
17309621--17309676	29	1.9	29	85	7	78	51	10	7	30	1.63
17310098--17310124	2	13.5	2	100	0	54	51	48	0	0	1.00
17310181--17310225	21	2.1	21	100	0	90	22	13	0	64	1.28
17316242--17316272	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17322516--17322608	2	50.0	2	69	14	56	1	52	0	46	1.07
17322523--17322651	33	4.1	33	70	14	110	3	51	0	45	1.17
17322517--17322638	21	6.1	21	77	16	116	3	51	0	45	1.17
17322558--17322638	39	2.1	39	92	0	135	4	49	0	45	1.23
17322517--17322631	60	1.9	60	87	3	167	2	52	0	45	1.14
17322558--17322673	39	2.9	39	84	6	119	6	48	0	44	1.33
17322682--17322716	18	1.9	18	88	0	52	2	51	0	45	1.16
17333368--17333452	34	2.5	33	75	11	82	34	18	8	38	1.81
17333930--17333991	9	6.8	9	74	3	52	27	1	1	69	1.07
17333984--17334033	24	2.1	24	92	0	82	38	0	6	56	1.24
17334093--17334179	34	2.6	34	75	10	88	43	16	8	32	1.76
17341489--17341527	19	2.0	20	90	5	62	48	0	0	51	1.00
17341656--17341690	2	18.0	2	94	5	63	51	0	0	48	1.00
17341895--17341920	2	13.0	2	100	0	52	50	0	0	50	1.00
17349378--17349689	172	1.8	171	81	5	387	39	16	9	34	1.81
17351324--17351357	15	2.2	16	89	5	52	38	0	0	61	0.96
17351391--17351435	19	2.4	18	85	7	54	37	2	2	57	1.23
17351590--17351637	24	2.0	25	83	4	62	47	8	0	43	1.33
17351668--17351728	32	1.9	32	86	0	86	54	6	3	36	1.43
17353598--17353684	34	2.6	34	78	8	97	27	2	4	65	1.24
17353694--17353742	18	2.7	19	73	17	50	20	0	16	63	1.31
17354027--17354070	17	2.5	17	85	3	52	45	4	0	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17358358--17358390	3	11.0	3	100	0	66	33	0	0	66	0.92
17358486--17358515	14	2.1	15	93	6	53	23	0	0	76	0.78
17358567--17358617	21	2.4	22	83	6	61	66	1	0	31	1.03
17358587--17358629	12	3.6	12	81	9	52	69	2	0	27	1.00
17359165--17359221	20	3.0	18	78	12	69	12	5	1	80	0.95
17359347--17359390	23	1.9	23	85	0	61	47	9	11	31	1.71
17365360--17365414	21	2.6	21	77	13	58	30	1	1	65	1.13
17365550--17365590	20	2.0	21	90	4	66	75	0	2	21	0.92
17365981--17366005	9	2.8	9	100	0	50	24	0	0	76	0.80
17365973--17366028	21	2.6	22	85	5	78	30	1	0	67	1.01
17366347--17366399	19	2.9	19	73	15	58	69	0	0	30	0.88
17371358--17371391	13	2.5	14	90	4	52	17	11	0	70	1.16
17374786--17374812	2	13.5	2	100	0	54	51	0	0	48	1.00
17391120--17391180	22	2.8	22	82	5	70	45	24	3	26	1.68
17392957--17393001	23	2.0	23	82	8	56	28	0	4	66	1.11
17392964--17393022	29	2.1	28	81	9	66	32	0	5	62	1.17
17394903--17394943	13	3.0	14	83	13	50	53	0	0	46	1.00
17412613--17412716	36	2.9	36	98	0	199	39	20	8	31	1.83
17417242--17417269	2	14.0	2	100	0	56	0	50	0	50	1.00
17428208--17428237	13	2.3	13	94	0	51	30	3	0	66	1.07
17440287--17440619	167	2.0	168	99	0	659	28	21	19	31	1.97
17441806--17442074	148	1.8	149	83	7	359	38	10	5	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17453244--17453577	168	2.0	168	99	0	659	28	21	19	31	1.97
17457343--17457768	214	2.0	214	94	0	744	40	8	9	41	1.67
17464312--17464915	188	3.3	185	78	9	590	40	15	11	32	1.82
17464896--17465013	61	1.9	63	82	8	152	32	14	8	44	1.75
17464886--17465038	64	2.5	60	77	11	150	32	17	7	41	1.78
17466148--17466194	24	2.0	24	83	8	60	55	0	2	42	1.12
17469264--17469305	22	1.9	22	90	0	66	50	19	9	21	1.75
17469286--17469320	15	2.3	15	90	0	52	45	22	11	20	1.82
17471477--17471511	16	2.2	16	89	0	52	45	11	14	28	1.79
17483574--17483907	169	2.0	168	97	1	634	28	21	18	31	1.97
17485108--17485384	146	1.9	146	83	7	366	37	10	5	45	1.62
17485108--17485424	146	2.2	145	81	8	351	39	11	6	43	1.66
17487691--17488106	215	1.9	214	93	1	717	41	7	8	42	1.63
17489489--17489550	26	2.3	27	78	10	65	41	0	3	54	1.16
17489562--17489610	27	1.9	24	84	12	62	57	0	0	42	0.99
17496568--17496601	3	11.3	3	100	0	68	32	0	0	67	0.91
17497802--17497887	27	3.2	27	83	0	100	26	20	13	38	1.91
17498141--17498254	42	2.7	42	77	12	126	35	14	13	35	1.86
17498322--17498474	42	3.7	41	78	10	159	30	14	17	37	1.90
17498266--17498380	61	1.9	61	83	7	153	29	13	15	40	1.86
17498706--17498818	6	18.7	6	79	6	104	27	2	5	64	1.28
17498706--17498818	18	6.2	18	85	6	131	27	2	5	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17499632--17499656	6	4.2	6	100	0	50	0	0	16	84	0.63
17499783--17499855	18	3.8	19	83	7	87	35	5	5	53	1.47
17499878--17499912	16	2.1	17	89	5	54	28	5	5	60	1.43
17500595--17500803	103	2.0	103	96	0	382	30	15	15	38	1.89
17504152--17504181	5	5.8	5	92	7	51	23	0	0	76	0.78
17509132--17509170	2	19.5	2	100	0	78	0	51	0	48	1.00
17513145--17513255	29	3.8	28	69	15	75	40	6	0	52	1.33
17513530--17513574	21	2.1	21	84	8	56	11	28	0	60	1.31
17513936--17513973	13	2.9	13	85	11	51	28	0	0	71	0.87
17516385--17516434	22	2.3	23	82	6	59	36	0	2	62	1.07
17516458--17516502	20	2.3	19	82	17	56	66	0	0	33	0.92
17516461--17516502	21	2.0	20	86	13	59	69	0	0	30	0.89
17516896--17516960	21	3.1	21	77	0	67	36	18	0	44	1.50
17517936--17517982	23	2.0	24	84	8	62	38	0	25	36	1.56
17518181--17518233	27	2.0	27	81	7	63	47	1	1	49	1.23
17518244--17518278	18	1.9	18	88	0	52	57	0	0	42	0.99
17525308--17525334	12	2.2	12	100	0	54	55	18	0	25	1.43
17526701--17526738	16	2.4	16	90	0	58	55	2	2	39	1.28
17530165--17530231	20	3.3	20	71	8	64	22	4	4	68	1.26
17530824--17530870	15	3.2	14	82	14	51	59	4	2	34	1.29
17531502--17531563	30	2.2	30	85	8	85	33	0	4	61	1.17
17531612--17531670	22	2.7	22	79	10	59	37	1	6	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17531782--17531911	30	4.8	29	67	26	104	44	2	2	50	1.27
17531802--17531908	24	4.2	24	72	21	94	44	2	1	50	1.27
17531805--17531911	23	4.3	24	76	21	105	44	2	1	50	1.27
17531782--17531911	53	2.4	53	86	11	192	44	2	2	50	1.27
17535181--17535212	1	32.0	1	93	0	55	0	3	0	96	0.20
17543059--17543083	2	12.5	2	100	0	50	0	48	0	52	1.00
17545784--17545828	21	2.1	21	84	8	56	46	4	4	44	1.43
17548363--17548411	16	3.1	16	84	0	71	38	10	6	44	1.63
17551488--17551534	24	2.0	24	83	8	60	27	10	29	31	1.90
17552146--17552185	21	1.9	21	94	0	71	52	2	7	37	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109