genome.fa.s35.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  90  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18080846--18080914	36	1.9	36	93	0	120	39	11	20	28	1.87
18082565--18082616	15	3.1	16	80	20	54	13	1	13	71	1.24
18084525--18085142	48	13.1	47	76	8	438	40	19	10	29	1.86
18084542--18085142	98	6.3	98	76	11	317	40	19	10	29	1.86
18084777--18085142	95	3.8	94	84	5	446	37	19	11	31	1.88
18084550--18084998	227	2.0	230	84	3	602	41	18	9	29	1.83
18084777--18085138	143	2.5	144	86	3	498	37	19	11	31	1.88
18085339--18085756	75	5.6	74	75	14	313	38	22	15	23	1.92
18085351--18085751	151	2.7	148	76	12	392	38	22	15	23	1.92
18085929--18086180	42	6.0	42	78	8	208	41	23	11	23	1.86
18085929--18086180	128	2.0	126	86	4	355	41	23	11	23	1.86
18085924--18086179	86	3.0	84	81	2	307	42	23	11	23	1.86
18086231--18086309	42	1.9	42	84	2	106	44	20	8	26	1.80
18086534--18086586	26	2.0	26	88	0	79	41	15	7	35	1.75
18087483--18087528	18	2.5	19	82	10	60	8	10	0	80	0.91
18091166--18091206	14	3.0	14	96	3	75	14	0	7	78	0.96
18092677--18092712	13	2.8	13	91	0	54	25	0	2	72	0.98
18093249--18093298	22	2.4	22	83	6	59	64	4	0	32	1.12
18093234--18093297	21	3.1	21	77	8	60	62	3	0	34	1.11
18100575--18100638	29	2.2	29	86	8	87	54	3	0	42	1.16
18100583--18100642	28	2.1	29	87	3	86	56	5	0	38	1.21
18102515--18102565	23	2.1	24	82	10	59	49	0	3	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18103425--18103498	30	2.5	30	77	0	76	40	12	2	44	1.56
18104344--18104614	57	4.8	58	89	6	403	38	14	6	40	1.71
18104634--18104685	5	10.4	5	77	22	56	82	0	1	15	0.75
18104634--18104691	12	5.1	12	79	14	61	81	0	3	15	0.83
18104634--18104685	14	3.1	18	76	23	60	82	0	1	15	0.75
18104990--18105034	10	4.3	11	78	15	51	0	37	0	62	0.96
18108702--18108726	11	2.3	11	100	0	50	92	0	0	8	0.40
18110295--18110344	21	2.4	21	96	0	91	36	10	16	38	1.82
18110749--18110933	42	4.4	42	83	4	212	23	10	18	47	1.80
18110905--18110960	28	2.0	28	92	0	94	23	8	16	51	1.72
18111793--18111824	16	1.9	17	93	6	57	12	0	6	81	0.87
18113426--18113476	14	3.7	14	72	15	52	21	1	5	70	1.18
18114025--18114066	21	2.0	21	86	9	59	69	0	9	21	1.17
18115246--18115315	27	2.6	28	78	17	76	30	2	0	67	1.05
18115241--18115302	33	1.9	33	83	9	83	29	3	0	67	1.06
18115328--18115362	17	1.9	19	88	11	56	20	11	0	68	1.20
18115329--18115378	25	2.0	24	81	11	57	22	10	2	66	1.32
18115573--18115608	18	1.9	19	88	5	56	58	22	19	0	1.40
18115766--18115832	6	12.8	5	75	21	50	16	4	2	76	1.08
18115773--18115837	21	3.2	20	76	10	69	16	6	3	73	1.16
18115766--18115832	27	2.6	25	82	15	75	16	4	2	76	1.08
18115849--18116525	58	11.7	57	78	9	633	43	8	11	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18115848--18116526	175	3.9	171	86	6	815	43	8	11	36	1.71
18115858--18116523	114	5.8	117	83	8	678	43	8	11	36	1.72
18120301--18120325	11	2.3	11	100	0	50	88	0	12	0	0.53
18120357--18120404	20	2.5	19	81	15	55	85	0	8	6	0.74
18121514--18121571	21	2.7	21	86	7	73	37	8	20	32	1.83
18122084--18122589	42	12.1	41	84	4	464	26	14	19	39	1.91
18122605--18122654	17	3.1	16	91	8	75	88	12	0	0	0.53
18122605--18122654	21	2.4	22	93	6	86	88	12	0	0	0.53
18122844--18122911	14	5.1	13	71	22	52	26	1	0	72	0.94
18122874--18122907	18	1.9	18	94	5	61	26	2	0	70	1.01
18122934--18122968	17	1.9	19	88	11	56	20	11	0	68	1.20
18122851--18122979	66	2.0	65	82	10	156	22	6	1	69	1.19
18123372--18123438	6	10.5	6	74	17	55	14	7	0	77	0.97
18123410--18123443	14	2.4	14	90	9	52	14	2	0	82	0.79
18123455--18123840	58	6.7	57	75	10	363	41	7	13	37	1.72
18123474--18123807	169	2.0	172	89	5	527	42	8	12	36	1.73
18124739--18124776	18	2.2	18	85	4	51	13	0	5	81	0.85
18124892--18124933	16	2.6	17	85	7	52	73	2	4	19	1.12
18125402--18125537	3	47.3	3	77	16	146	60	2	2	34	1.24
18125779--18125887	42	2.6	42	92	2	175	23	23	11	40	1.88
18136582--18136667	34	2.5	34	88	3	120	36	30	11	22	1.89
18137730--18137755	13	2.0	13	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18137944--18138002	23	2.6	23	78	10	68	76	11	0	11	1.03
18137944--18138020	34	2.3	34	80	6	86	75	11	0	12	1.05
18139055--18139096	21	2.0	21	81	9	50	64	0	11	23	1.27
18139422--18139448	14	1.9	14	100	0	54	51	0	3	44	1.19
18139975--18140533	42	13.2	42	82	6	350	28	27	10	33	1.90
18140016--18140361	42	8.2	43	84	8	376	29	29	10	30	1.90
18139985--18140397	174	2.4	174	81	5	454	29	28	10	31	1.90
18140341--18140652	42	7.4	42	84	0	372	26	25	11	36	1.90
18140341--18140652	84	3.7	84	88	1	446	26	25	11	36	1.90
18143695--18143990	99	3.0	99	96	0	549	28	22	12	35	1.91
18145805--18145840	12	2.8	13	91	4	56	52	0	5	41	1.24
18145853--18145898	20	2.3	20	88	7	67	69	2	2	26	1.11
18147345--18147378	17	1.9	18	88	5	52	52	0	0	47	1.00
18147544--18147580	19	2.0	18	89	5	56	45	8	2	43	1.47
18148106--18148228	32	3.6	32	71	17	111	43	5	16	34	1.71
18148072--18148229	72	2.3	67	85	10	235	41	6	17	33	1.76
18148085--18148223	72	1.9	72	97	0	260	41	5	17	35	1.73
18148105--18148217	36	3.1	36	68	14	115	45	5	16	32	1.70
18158462--18158751	151	1.9	151	88	2	440	37	10	8	43	1.70
18160157--18160228	28	2.5	28	90	2	108	31	22	16	29	1.96
18160153--18160228	29	2.7	29	89	2	118	31	22	17	28	1.96
18165214--18165244	10	2.9	11	90	9	55	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18165203--18165237	17	2.1	17	88	0	52	28	0	0	71	0.86
18165203--18165264	27	2.3	27	80	5	72	35	0	0	64	0.94
18165463--18165503	21	2.0	21	90	0	64	34	24	14	26	1.94
18166797--18166836	19	2.1	19	85	0	53	52	0	10	37	1.35
18169273--18169684	145	2.8	145	83	2	490	39	11	15	33	1.83
18170775--18170808	17	1.9	18	88	5	52	52	0	0	47	1.00
18176129--18176437	151	2.0	151	92	0	519	38	12	7	41	1.72
18179531--18179558	14	2.0	14	100	0	56	35	7	7	50	1.57
18180867--18180914	20	2.4	20	85	0	60	52	2	2	43	1.24
18181152--18181198	17	2.6	17	83	6	58	34	0	0	65	0.93
18181309--18181421	42	2.7	41	80	5	111	26	29	10	33	1.90
18181361--18181482	42	2.9	42	77	2	129	22	25	15	36	1.94
18182749--18182788	19	2.1	19	85	0	53	52	0	10	37	1.35
18185433--18185468	12	2.8	13	91	4	56	52	0	5	41	1.24
18186932--18186965	17	1.9	18	88	5	52	52	0	0	47	1.00
18187131--18187167	19	2.0	18	89	5	56	45	8	2	43	1.47
18197069--18197358	151	1.9	151	92	0	481	37	10	7	44	1.69
18197952--18197976	12	2.1	12	100	0	50	24	40	0	36	1.55
18200475--18200509	14	2.5	14	95	0	61	40	5	5	48	1.51
18203829--18203863	17	2.1	17	94	0	61	25	0	0	74	0.82
18203840--18203871	10	3.1	10	95	4	55	21	0	0	78	0.76
18203832--18203885	23	2.3	23	71	6	56	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18204000--18204108	42	2.6	42	79	5	105	26	26	11	34	1.91
18205437--18205476	19	2.1	19	85	0	53	52	0	10	37	1.35
18206049--18206099	19	2.7	18	79	14	50	54	5	13	25	1.61
18207020--18207053	12	2.7	13	90	4	52	50	0	5	44	1.26
18207068--18207113	20	2.3	20	88	7	67	69	2	2	26	1.11
18208715--18208751	19	2.0	18	89	5	56	45	8	2	43	1.47
18215323--18215347	12	2.1	12	100	0	50	24	40	0	36	1.55
18219977--18220023	17	2.6	17	83	6	58	34	0	0	65	0.93
18220138--18220246	42	2.6	42	81	5	114	25	26	12	34	1.92
18220186--18220307	42	2.9	42	77	7	122	22	24	15	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109