genome.fa.s35.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  63  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12651750--12651807	27	2.2	26	84	3	71	32	3	0	63	1.11
12651751--12651807	21	2.7	22	75	5	64	31	3	0	64	1.10
12652775--12652831	30	1.9	30	100	0	114	14	26	7	52	1.66
12653171--12653200	2	15.0	2	100	0	60	50	0	0	50	1.00
12653802--12653836	18	1.9	18	94	0	61	65	0	11	22	1.24
12654212--12654241	16	1.9	16	93	6	53	36	0	3	60	1.14
12654975--12655017	3	14.3	3	100	0	86	32	0	0	67	0.91
12655422--12655525	11	9.7	11	71	21	71	25	0	2	72	0.99
12655443--12655549	46	2.3	45	80	16	123	29	0	1	68	1.00
12655426--12655540	4	28.5	4	71	18	62	26	0	2	70	1.00
12655434--12655543	11	10.2	11	73	17	65	28	0	2	69	1.03
12655627--12655703	39	1.9	41	84	10	106	27	9	3	59	1.45
12656556--12656631	6	12.8	6	74	18	70	15	5	0	78	0.91
12656584--12656631	23	2.1	23	88	7	71	16	2	0	81	0.79
12656556--12656636	17	4.6	17	77	19	76	16	6	0	77	0.95
12656628--12656866	60	4.1	59	79	11	253	43	5	10	40	1.62
12656639--12656866	118	1.9	117	89	4	352	44	5	10	39	1.63
12656885--12656921	10	3.7	10	92	0	56	8	2	0	89	0.58
12659864--12659888	13	1.9	13	100	0	50	16	4	24	56	1.57
12659835--12659887	21	2.3	23	75	21	58	11	1	28	58	1.43
12664610--12664658	4	13.0	4	75	12	50	24	2	2	71	1.07
12672204--12672298	9	10.1	9	71	13	57	75	2	14	7	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12672236--12672301	17	4.1	17	74	20	70	78	1	16	3	0.95
12672204--12672298	27	3.4	28	76	8	86	75	2	14	7	1.10
12672235--12672298	30	2.1	31	91	8	105	79	1	15	3	0.93
12673701--12673935	45	5.2	44	88	7	296	25	11	17	45	1.82
12673726--12673964	45	5.4	43	86	6	191	24	11	20	43	1.85
12673756--12674118	44	8.3	43	81	7	254	22	11	20	45	1.83
12673747--12674118	87	4.2	86	77	9	281	22	11	19	45	1.82
12673947--12674143	87	2.2	88	84	2	272	20	12	20	45	1.84
12674316--12674368	4	14.0	4	76	11	58	24	1	1	71	1.06
12675204--12675248	23	2.0	23	86	0	63	17	0	8	73	1.08
12678570--12678613	14	3.0	14	81	12	52	31	0	0	68	0.90
12689331--12689360	2	15.5	2	93	6	53	53	0	0	46	1.00
12689331--12689363	17	1.9	17	100	0	66	54	0	0	45	0.99
12694925--12694951	4	6.8	4	100	0	54	51	22	0	25	1.48
12696270--12696296	3	9.0	3	100	0	54	33	0	0	66	0.92
12709754--12709819	34	2.0	32	82	5	78	37	7	13	40	1.73
12711224--12711249	12	2.2	12	100	0	52	34	30	0	34	1.58
12711543--12711613	22	3.3	22	75	14	67	49	0	0	50	1.00
12712651--12712717	28	2.4	28	97	0	125	49	14	8	26	1.73
12715765--12715802	13	3.1	13	88	7	53	78	5	7	7	1.07
12716112--12716158	15	3.1	15	82	11	53	23	0	10	65	1.23
12716284--12716316	15	2.3	15	89	5	50	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12716570--12716685	61	1.9	61	82	3	144	31	6	11	50	1.65
12717221--12717246	13	2.0	13	100	0	52	23	23	38	15	1.92
12728267--12728296	14	2.1	14	93	0	51	13	23	3	60	1.48
12731924--12731981	24	2.7	21	77	15	64	1	6	6	84	0.84
12736239--12736273	8	4.1	8	86	13	52	60	0	0	40	0.97
12736245--12736296	18	2.9	18	85	2	61	65	0	0	34	0.93
12739377--12739402	2	13.0	2	100	0	52	50	0	0	50	1.00
12739956--12739989	16	2.1	16	100	0	68	29	11	23	35	1.90
12741862--12741892	2	16.0	2	93	6	55	51	0	0	48	1.00
12745033--12745070	20	2.0	20	89	5	60	60	7	0	31	1.25
12745781--12745869	28	3.1	28	80	7	83	22	0	29	48	1.51
12745803--12745885	28	2.9	28	85	1	112	21	0	30	48	1.51
12746274--12746320	17	2.8	18	78	12	55	72	4	0	23	1.02
12746274--12746337	33	1.9	34	84	9	87	71	3	1	23	1.08
12747088--12747134	11	4.3	11	75	20	53	14	6	51	27	1.67
12747089--12747131	21	2.0	21	86	8	61	13	6	51	27	1.67
12747256--12747301	16	2.8	17	86	3	58	56	4	0	39	1.19
12749297--12749370	37	2.0	37	94	0	130	32	8	27	32	1.86
12757240--12757279	19	2.0	20	95	4	73	27	5	25	42	1.75
12767620--12767807	98	1.9	98	88	4	281	40	13	20	25	1.89
12768471--12768562	12	8.1	11	69	21	57	20	1	8	69	1.21
12768474--12768536	25	2.5	26	77	17	69	20	0	9	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12768764--12768802	16	2.4	17	87	8	55	76	0	0	23	0.78
12768763--12768803	20	2.0	21	90	4	66	75	0	0	24	0.80
12769127--12769170	19	2.3	19	84	0	61	75	9	0	15	1.05
12771637--12771722	39	2.2	39	91	0	136	31	9	18	40	1.82
12784964--12785021	26	2.2	26	85	11	75	32	1	6	58	1.35
12784964--12785015	25	2.1	25	86	13	72	32	1	7	57	1.38
12784989--12785033	22	2.1	21	84	15	58	35	2	6	55	1.38
12785042--12785127	30	2.9	31	76	13	90	48	3	8	39	1.50
12789374--12789416	18	2.4	17	74	11	50	16	2	18	62	1.43
12789678--12789737	24	2.5	24	78	5	68	41	25	16	16	1.89
12790203--12790307	53	2.0	54	86	3	151	40	16	7	35	1.77
12794258--12794319	31	2.0	32	83	3	81	32	17	11	38	1.85
12796552--12796600	12	3.8	13	78	19	50	73	2	16	8	1.16
12796559--12796601	13	3.2	13	76	3	50	74	2	16	6	1.14
12796604--12796660	3	19.0	3	100	0	114	66	0	0	33	0.92
12797721--12797812	45	2.1	45	87	2	132	38	14	14	33	1.86
12797715--12798164	162	2.8	156	82	4	481	40	13	12	33	1.82
12797715--12798248	162	3.3	162	79	5	419	40	13	12	33	1.82
12798100--12798365	117	2.3	117	80	5	306	39	12	12	34	1.82
12804821--12804901	40	2.0	40	81	13	96	44	3	1	50	1.27
12804876--12804908	15	2.1	16	88	5	50	48	3	0	48	1.17
12805691--12805784	31	3.0	31	76	0	98	41	7	12	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12806528--12806553	13	2.0	13	100	0	52	30	15	7	46	1.74
12809871--12809902	12	2.6	13	85	14	50	37	0	0	62	0.95
12810899--12810936	20	1.9	20	84	10	51	47	7	2	42	1.46
12811002--12811105	29	3.6	28	77	11	86	50	1	0	47	1.12
12814167--12814202	10	3.4	10	88	11	54	50	11	2	36	1.53
12819458--12819575	3	41.3	3	71	18	74	60	3	4	32	1.33
12819471--12819576	8	12.2	8	71	17	70	57	3	4	33	1.37
12819454--12819595	5	26.8	5	71	16	58	59	4	4	32	1.36
12819468--12819596	30	4.2	29	73	17	102	57	4	4	33	1.40
12820310--12820433	66	1.9	66	84	3	169	45	15	20	18	1.85
12820317--12820461	66	2.2	66	77	4	150	44	15	22	17	1.87
12820386--12820607	121	1.8	121	82	1	284	43	15	21	19	1.87
12820813--12820890	39	2.1	37	83	9	97	38	8	2	50	1.48
12821138--12821164	2	13.5	2	100	0	54	51	0	0	48	1.00
12822188--12822231	3	14.7	3	100	0	88	31	0	0	68	0.90
12834307--12834351	10	4.5	10	88	0	54	11	26	0	62	1.29
12834308--12834351	15	2.9	15	86	0	61	11	25	0	63	1.27
12834308--12834341	5	6.8	5	93	0	59	14	23	0	61	1.33
12838591--12838659	30	2.3	30	80	14	81	36	0	2	60	1.11
12838638--12838669	7	4.4	7	96	4	55	43	0	0	56	0.99
12838698--12838733	19	1.9	19	88	5	56	55	0	2	41	1.14
12838705--12838793	29	3.1	28	78	10	92	60	0	3	35	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12839872--12839906	17	2.1	17	89	10	54	20	0	11	68	1.20
12840212--12840241	14	2.1	15	93	6	53	10	0	13	76	1.01
12842360--12842413	19	2.7	19	88	5	81	9	0	40	50	1.35
12842365--12842705	7	51.4	7	71	14	136	19	1	31	46	1.58
12842382--12842705	27	12.2	26	69	17	127	20	1	31	46	1.59
12842365--12842701	20	16.6	20	70	17	173	20	1	32	46	1.58
12842365--12842494	53	2.5	53	83	5	156	19	0	33	47	1.49
12843662--12843705	21	2.1	22	87	8	65	59	0	15	25	1.37
12844087--12844411	146	2.2	143	80	7	336	46	12	9	31	1.73
12845066--12845199	64	2.1	65	81	6	157	31	7	5	55	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109