genome.fa.s35.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  64  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12847088--12847252	17	9.7	17	71	10	72	38	7	15	38	1.77
12847079--12847170	34	2.7	34	81	8	116	36	5	20	36	1.76
12847099--12847146	9	5.6	8	80	9	51	37	4	22	35	1.74
12847263--12847295	17	1.9	17	93	0	57	36	6	6	51	1.51
12847352--12847448	17	5.7	17	75	4	79	43	13	18	24	1.86
12847395--12847477	17	4.9	17	72	8	62	44	14	15	25	1.84
12848863--12848913	7	6.9	7	75	20	50	15	3	0	80	0.86
12848844--12848913	31	2.2	32	84	2	88	15	5	0	78	0.93
12848853--12848914	8	7.9	8	77	12	58	14	4	0	80	0.87
12851700--12851728	10	3.0	10	95	5	51	0	6	0	93	0.36
12852164--12852201	16	2.3	17	86	4	51	42	15	7	34	1.76
12853100--12853125	2	13.0	2	100	0	52	50	0	0	50	1.00
12853929--12853987	30	2.0	30	86	0	82	52	6	6	33	1.54
12862771--12862807	18	2.1	18	89	0	56	51	0	27	21	1.48
12863105--12863141	18	2.1	18	100	0	74	48	8	0	43	1.32
12873080--12873104	7	3.6	7	100	0	50	56	0	0	44	0.99
12881548--12881668	59	2.1	59	93	0	206	31	11	15	41	1.83
12883647--12883683	19	1.9	19	94	0	65	48	8	10	32	1.67
12883649--12883692	19	2.3	19	88	0	61	45	11	11	31	1.76
12887057--12887107	16	3.3	16	83	8	70	27	1	21	49	1.60
12887150--12887267	15	7.8	15	70	11	71	19	0	29	50	1.48
12887150--12887260	7	14.9	7	67	19	55	19	0	28	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887208--12887262	22	2.5	22	87	3	74	20	0	30	49	1.49
12887326--12887356	14	2.1	15	94	5	55	16	0	6	77	0.97
12887561--12887616	3	18.7	3	100	0	112	32	0	0	67	0.91
12890003--12890027	12	2.1	12	100	0	50	44	0	0	56	0.99
12890305--12890382	35	2.2	35	84	4	104	51	10	17	20	1.74
12890815--12891107	35	8.4	35	71	7	132	47	10	19	22	1.79
12890893--12891046	69	2.2	70	81	6	188	44	10	22	22	1.83
12891932--12892104	81	2.1	81	88	2	249	38	10	12	39	1.77
12892380--12892461	29	2.9	28	78	8	94	26	10	21	40	1.87
12892495--12892574	28	2.9	28	75	14	83	36	15	13	35	1.86
12902527--12902793	57	4.7	57	84	2	324	37	13	5	43	1.68
12902527--12902785	113	2.3	112	86	4	351	37	13	6	42	1.69
12902527--12902814	113	2.5	112	79	5	328	37	12	6	43	1.68
12902811--12902960	5	29.2	5	70	18	62	73	3	4	18	1.15
12902811--12902909	6	16.5	6	74	14	71	77	2	6	14	1.04
12902811--12902970	12	12.8	12	69	22	73	74	3	4	18	1.12
12902806--12902914	54	2.0	53	81	15	127	76	1	7	14	1.09
12902811--12902890	37	2.2	35	82	8	90	78	2	5	13	1.01
12902807--12902914	30	3.6	30	77	17	93	76	1	7	13	1.07
12902847--12902914	27	2.6	24	78	15	73	77	1	7	13	1.03
12903492--12903521	13	2.3	13	94	0	51	66	10	3	20	1.35
12903801--12903828	13	2.2	13	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12903998--12904056	21	2.9	21	78	14	61	76	3	3	16	1.06
12904217--12904426	41	5.1	41	84	2	233	37	20	15	25	1.93
12904406--12904448	21	2.0	21	95	0	77	37	13	11	37	1.82
12904365--12904488	62	2.0	62	88	0	185	38	17	13	29	1.89
12904335--12904529	103	1.9	103	90	0	309	37	20	14	27	1.91
12904427--12904531	41	2.6	41	95	0	183	36	21	15	26	1.93
12905530--12905558	8	3.8	8	95	4	51	6	10	0	82	0.83
12912462--12912503	10	4.2	10	79	8	50	7	9	2	80	0.97
12912839--12912877	17	2.3	17	90	0	60	2	12	0	84	0.72
12912839--12912884	6	7.8	6	80	9	51	4	13	0	82	0.81
12912844--12912898	12	4.4	13	77	13	53	7	12	3	76	1.12
12915528--12915574	15	3.1	15	77	20	53	44	2	0	53	1.12
12915679--12915743	30	2.1	30	82	2	76	52	1	4	41	1.31
12915696--12915753	30	1.9	30	85	3	80	51	1	3	43	1.28
12918693--12918754	27	2.3	26	84	10	81	46	6	1	45	1.38
12918794--12918831	9	4.6	8	87	12	51	13	0	0	86	0.56
12918800--12918831	9	3.6	9	95	0	55	12	0	0	87	0.54
12918794--12918831	18	2.2	18	90	9	62	13	0	0	86	0.56
12918910--12918967	24	2.4	24	75	13	57	44	10	6	37	1.65
12919348--12919386	21	1.9	20	89	5	60	2	33	0	64	1.08
12920845--12920874	11	2.7	11	94	0	51	40	0	0	60	0.97
12920955--12921020	18	3.4	19	74	10	62	48	6	1	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12920977--12921020	21	2.2	20	87	4	61	47	9	0	43	1.35
12921349--12921389	19	2.2	19	86	0	55	48	4	0	46	1.23
12921370--12921433	31	2.1	31	82	11	78	53	6	4	35	1.47
12921552--12921582	14	2.2	14	94	0	53	45	3	0	51	1.17
12925423--12925447	5	5.0	5	100	0	50	80	0	0	20	0.72
12927468--12927507	9	4.3	9	84	6	53	10	7	0	82	0.84
12927468--12927507	10	4.3	10	78	15	50	10	7	0	82	0.84
12927465--12927507	18	2.4	17	88	11	68	11	9	0	79	0.95
12928185--12928253	36	1.9	35	94	2	120	43	0	2	53	1.15
12928185--12928266	33	2.4	35	84	10	98	42	0	3	53	1.18
12928206--12928277	33	2.2	33	80	5	83	48	1	4	45	1.30
12932443--12932467	11	2.3	11	100	0	50	40	0	16	44	1.47
12933041--12933091	20	2.5	21	81	15	54	49	21	5	23	1.71
12933216--12933249	17	1.9	18	88	5	52	58	5	11	23	1.55
12933496--12933534	20	2.0	20	84	0	51	61	10	15	12	1.56
12934113--12934180	22	3.1	22	80	0	73	48	14	5	30	1.68
12934381--12934490	58	1.9	55	80	12	125	45	9	8	37	1.66
12934499--12934667	91	1.9	91	86	7	245	45	13	6	34	1.69
12934513--12934687	21	8.0	21	66	16	77	44	15	6	33	1.73
12934863--12934915	21	2.4	22	81	9	63	49	9	1	39	1.46
12934477--12934915	44	9.7	44	69	13	173	45	14	6	33	1.71
12934768--12934960	89	2.2	88	79	9	196	49	12	5	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12935564--12935628	26	2.5	27	80	7	64	41	15	13	29	1.86
12936742--12936777	18	2.1	17	89	5	54	2	13	0	83	0.76
12938839--12938913	8	9.5	8	71	18	50	16	2	2	78	0.97
12938839--12938941	15	6.7	15	67	17	50	18	2	2	75	1.05
12938841--12938913	27	2.7	26	80	8	83	16	2	2	78	0.99
12938871--12938944	34	2.2	34	81	13	82	20	2	2	74	1.07
12939023--12939062	11	3.5	12	75	25	50	27	5	5	62	1.37
12939023--12939075	22	2.5	21	87	6	72	24	5	7	62	1.44
12939023--12939084	20	3.0	20	77	13	63	24	4	6	64	1.37
12939988--12940026	17	2.3	17	90	0	60	15	2	2	79	0.95
12939994--12940080	30	3.0	30	79	12	92	12	6	3	77	1.10
12940002--12940083	17	5.0	17	67	21	50	13	6	3	76	1.10
12940097--12940306	58	3.7	57	82	7	266	42	6	15	36	1.72
12940097--12940306	115	1.8	113	87	4	314	42	6	15	36	1.72
12940379--12940424	24	1.9	24	100	0	92	30	10	21	36	1.88
12941305--12941519	96	2.2	98	86	5	296	40	5	9	44	1.60
12943916--12943951	17	2.1	18	90	10	58	11	5	11	72	1.28
12944241--12944337	3	32.3	3	90	0	50	67	15	1	16	1.30
12944241--12944337	6	15.7	6	85	6	59	67	15	1	16	1.30
12944256--12944323	9	7.6	9	86	0	73	67	22	1	8	1.26
12944582--12944706	52	2.5	51	76	5	128	42	17	9	30	1.81
12944771--12945059	49	5.8	49	76	6	204	39	17	10	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12944836--12945167	49	6.5	54	74	14	188	40	18	10	30	1.84
12944831--12945090	49	5.2	49	77	9	211	40	18	9	31	1.83
12944827--12945114	152	1.9	152	83	1	380	40	18	9	30	1.83
12946029--12946064	10	3.5	10	88	7	54	0	13	0	86	0.58
12948791--12948925	66	2.0	66	100	0	270	40	11	10	37	1.76
12968280--12968486	42	5.0	42	70	5	118	22	11	16	48	1.78
12968285--12968410	39	3.2	39	68	10	92	20	10	18	50	1.75
12973887--12973941	23	2.6	21	78	18	60	43	5	0	50	1.25
12974394--12974435	20	2.2	20	86	4	59	64	2	30	2	1.19
12974951--12974993	22	2.0	21	86	4	59	34	0	2	62	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109