genome.fa.s35.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  97  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19432899--19433017	55	2.1	56	89	4	179	57	3	7	31	1.43
19438383--19438444	31	2.0	31	100	0	124	35	9	19	35	1.85
19442259--19442288	1	30.0	1	100	0	60	0	0	0	100	0.00
19444292--19444372	40	2.0	40	92	0	135	22	8	20	48	1.77
19453398--19453709	168	1.9	167	86	2	446	32	8	13	46	1.73
19458438--19458487	18	2.7	19	78	6	57	42	0	0	58	0.98
19460561--19460862	8	38.8	8	67	24	57	21	0	28	49	1.56
19460561--19460660	16	6.4	16	73	11	64	24	0	26	50	1.50
19460607--19460697	24	3.8	24	76	17	82	20	0	30	48	1.50
19460562--19460707	54	2.7	55	79	10	149	21	0	28	49	1.50
19460598--19460789	23	8.3	23	72	12	110	19	0	31	48	1.49
19460703--19460780	15	5.3	14	75	20	70	19	0	29	51	1.47
19460769--19460814	18	2.6	18	85	0	56	17	0	30	52	1.45
19461589--19461634	18	2.5	18	82	10	58	78	0	2	19	0.86
19461601--19461634	12	2.8	12	91	8	52	82	0	0	17	0.67
19463198--19463349	36	4.2	36	76	2	144	57	14	11	17	1.65
19463198--19463351	71	2.1	73	84	4	197	57	14	11	16	1.66
19463220--19463418	71	2.8	71	79	3	184	54	14	12	18	1.70
19476806--19476834	9	3.0	10	90	10	51	58	0	41	0	0.98
19480424--19480484	2	30.5	2	100	0	122	49	0	50	0	1.00
19480526--19480569	21	2.1	21	100	0	88	29	9	31	29	1.88
19481003--19481460	219	2.1	219	83	3	578	41	5	7	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19484639--19484675	19	1.9	19	89	10	58	56	2	8	32	1.43
19488022--19488083	24	2.6	24	76	2	72	35	0	0	64	0.94
19490018--19490046	14	2.0	15	93	6	51	34	6	10	48	1.64
19490954--19490984	16	1.9	16	100	0	62	51	6	12	29	1.65
19491938--19491963	9	2.9	9	100	0	52	11	11	30	46	1.76
19494511--19494540	2	15.0	2	100	0	60	50	0	0	50	1.00
19494824--19494869	19	2.2	22	85	14	62	50	0	0	50	1.00
19494824--19494882	22	2.8	21	80	16	61	45	0	0	54	0.99
19495458--19495488	16	1.9	16	93	0	53	51	12	6	29	1.65
19495653--19495693	20	2.0	20	86	13	57	34	0	0	65	0.93
19495673--19495742	30	2.4	30	78	2	79	41	0	1	57	1.08
19495710--19495762	20	2.7	19	88	8	79	52	0	0	47	1.00
19496796--19496844	19	2.6	19	77	9	55	30	2	6	61	1.32
19496939--19496983	18	2.4	19	88	3	65	28	2	4	64	1.25
19496832--19497019	55	3.2	54	75	17	139	35	3	3	58	1.30
19496997--19497036	18	2.3	17	86	4	53	37	2	2	57	1.26
19497003--19497066	29	2.2	28	83	2	83	32	4	4	57	1.40
19496888--19497046	55	2.8	58	80	8	152	33	3	3	59	1.33
19497032--19497092	16	3.6	16	77	14	61	27	3	4	63	1.30
19497043--19497099	17	3.4	17	72	13	55	28	1	5	64	1.25
19497033--19497100	34	2.0	34	85	5	93	26	2	5	64	1.30
19498132--19498168	16	2.3	16	90	0	56	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19498492--19498519	2	14.0	2	100	0	56	50	0	0	50	1.00
19498519--19498552	2	17.0	2	100	0	68	50	0	50	0	1.00
19499335--19499457	61	2.0	61	93	0	210	24	11	17	46	1.81
19508769--19508812	22	2.0	22	90	0	70	34	9	13	43	1.76
19511092--19511125	2	17.0	2	100	0	68	50	0	0	50	1.00
19513142--19513190	13	3.0	18	66	27	54	38	6	4	51	1.46
19517792--19518017	113	2.0	113	87	1	328	30	11	20	38	1.88
19518207--19518240	17	1.9	18	94	5	61	64	2	0	32	1.08
19518215--19518263	21	2.2	22	78	7	55	71	0	2	26	0.97
19519764--19519833	24	2.9	25	75	16	83	48	27	1	22	1.59
19519762--19519867	31	3.3	31	82	6	124	47	31	0	20	1.57
19519759--19519867	16	6.8	16	78	7	114	47	31	0	20	1.56
19519759--19519876	48	2.5	47	80	5	130	46	31	1	20	1.60
19519892--19519933	14	2.9	15	78	7	50	47	30	0	21	1.51
19520036--19520083	23	2.1	23	84	0	60	41	22	4	31	1.73
19522404--19522443	15	2.7	15	96	0	71	2	10	35	52	1.48
19532636--19532701	34	1.9	34	82	11	82	16	19	16	46	1.84
19532666--19533219	171	3.2	170	85	3	677	20	20	13	44	1.85
19533414--19533555	36	3.9	36	76	9	130	21	22	11	45	1.83
19533498--19533570	36	2.0	36	84	5	94	19	21	10	47	1.79
19535342--19535439	17	6.0	17	85	7	123	46	32	2	18	1.60
19535342--19535439	16	6.1	16	86	4	117	46	32	2	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19535335--19535429	31	2.9	33	84	6	131	49	31	1	17	1.54
19535433--19535526	22	4.5	22	67	23	60	43	30	1	24	1.61
19535393--19535534	61	2.3	61	98	1	275	45	29	2	23	1.64
19535516--19535557	14	2.9	15	78	7	50	47	35	0	16	1.47
19535498--19535673	58	3.1	56	76	11	135	44	32	0	22	1.57
19539122--19539150	13	2.1	14	93	6	51	89	0	10	0	0.48
19544971--19545052	42	2.0	41	83	7	103	45	6	6	42	1.53
19552835--19552899	24	2.6	25	90	4	96	44	20	15	20	1.86
19552885--19552945	26	2.3	26	100	0	122	32	13	14	39	1.85
19553627--19554033	149	2.8	144	80	6	458	37	16	11	34	1.85
19553991--19554043	23	2.3	23	83	3	63	39	28	7	24	1.82
19554002--19554163	22	7.3	22	73	3	101	39	25	7	27	1.82
19554029--19554130	44	2.3	44	86	6	136	40	25	5	28	1.79
19554045--19554174	66	2.0	66	82	0	161	39	23	7	29	1.83
19554468--19554509	6	6.7	6	86	8	57	83	14	0	2	0.75
19554454--19554510	19	2.9	19	81	5	60	82	12	3	1	0.87
19554468--19554509	13	3.3	12	87	9	57	83	14	0	2	0.75
19555235--19555278	14	3.2	13	81	9	52	81	13	2	2	0.88
19555235--19555300	16	4.1	14	73	21	51	81	12	1	4	0.90
19555256--19555300	21	2.1	21	87	0	63	84	11	0	4	0.76
19556314--19556376	3	20.7	3	76	20	60	65	0	1	33	1.03
19556306--19556373	15	4.6	15	77	18	63	63	0	1	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19556501--19556568	15	4.7	15	77	15	63	51	32	0	16	1.45
19556512--19556570	22	2.7	22	81	0	73	47	33	0	18	1.49
19562153--19562547	139	2.8	142	77	10	369	42	8	12	36	1.72
19565254--19565296	22	1.9	23	86	13	63	58	0	0	41	0.98
19565294--19565318	11	2.3	11	100	0	50	64	0	0	36	0.94
19568844--19568875	13	2.4	13	94	5	55	25	0	0	75	0.81
19575105--19575153	2	24.5	2	91	0	80	51	4	0	44	1.20
19575153--19575618	244	1.9	243	97	0	878	33	16	14	35	1.90
19576982--19577039	26	2.4	25	80	11	75	39	12	8	39	1.73
19579033--19579065	11	3.1	11	86	8	50	0	12	0	87	0.53
19587107--19587135	2	14.5	2	100	0	58	51	0	0	48	1.00
19592381--19592443	11	5.4	11	77	20	65	11	0	6	82	0.83
19592388--19592443	25	2.2	25	84	9	78	10	0	5	83	0.78
19592664--19592704	17	2.4	18	80	12	50	58	2	39	0	1.11
19592919--19592985	12	5.3	13	75	18	70	13	0	4	82	0.82
19592919--19592985	26	2.7	24	88	11	107	13	0	4	82	0.82
19592926--19592983	9	6.7	9	74	5	57	13	0	3	82	0.79
19592052--19593663	538	3.0	536	91	2	2590	33	15	17	33	1.91
19593594--19593641	25	1.9	25	83	8	62	47	4	8	39	1.53
19593732--19593762	16	1.9	16	93	0	53	80	0	3	16	0.83
19593608--19594113	191	2.6	189	80	8	542	45	8	9	36	1.67
19604604--19604643	11	3.6	11	82	0	53	85	0	10	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19605493--19605536	21	2.1	21	87	4	63	31	6	15	45	1.73
19605487--19605536	21	2.3	22	80	13	59	32	6	16	46	1.71
19605603--19605684	20	4.0	20	68	7	65	32	10	20	35	1.88
19605874--19605964	40	2.3	40	94	1	157	29	19	13	37	1.90
19606665--19606722	13	4.6	13	79	10	59	13	0	6	79	0.93
19611640--19611706	28	2.4	28	90	7	100	62	0	1	35	1.04
19618595--19618661	30	2.2	30	89	5	100	23	0	1	74	0.90
19618885--19618909	9	2.8	9	100	0	50	16	0	0	84	0.63
19622537--19622593	23	2.5	24	82	5	64	63	0	3	33	1.12
19622556--19622602	19	2.4	19	83	13	60	70	0	0	29	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109