genome.fa.s35.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  7  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048231--1048288	25	2.2	25	82	11	64	51	3	1	43	1.28
1051076--1051122	24	2.0	24	91	0	76	46	2	0	51	1.13
1059719--1059748	2	15.0	2	100	0	60	50	0	0	50	1.00
1062687--1062746	29	2.1	29	100	0	120	36	13	6	43	1.70
1065402--1065996	305	2.0	304	86	1	834	33	15	16	34	1.90
1070811--1070846	18	1.9	19	88	5	56	38	19	0	41	1.52
1075457--1075487	15	2.1	15	93	0	53	9	3	25	61	1.42
1075497--1075545	17	2.9	16	79	11	53	8	2	8	81	0.94
1076372--1076407	18	2.0	18	89	10	56	58	0	0	41	0.98
1090795--1090825	2	15.5	2	93	0	53	51	0	0	48	1.00
1092697--1092732	16	2.4	15	86	13	56	58	0	0	41	0.98
1093204--1093260	28	2.0	29	83	10	73	35	0	5	59	1.20
1093517--1093562	24	2.0	23	91	4	74	41	2	2	54	1.25
1093917--1093949	3	11.0	3	100	0	66	33	0	0	66	0.92
1093966--1094034	29	2.4	28	83	11	77	53	2	1	42	1.24
1093997--1094034	19	2.1	17	90	9	58	55	0	0	44	0.99
1094156--1094206	14	3.6	14	76	7	50	49	0	0	50	1.00
1096057--1096110	28	1.9	28	92	0	90	33	3	18	44	1.67
1097604--1097680	30	2.5	30	83	6	84	33	7	2	55	1.42
1097613--1097682	30	2.3	30	85	4	88	34	8	2	54	1.46
1098802--1098828	2	13.5	2	100	0	54	51	0	0	48	1.00
1098980--1099030	24	2.1	24	88	0	75	25	0	21	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111787--1111961	92	1.9	92	88	2	262	42	16	7	33	1.75
1113895--1113929	17	2.1	17	89	5	54	14	11	22	51	1.74
1115020--1115178	21	7.8	21	80	5	155	17	25	24	32	1.97
1115031--1115178	80	1.9	80	80	0	179	16	25	24	34	1.95
1116775--1116949	92	1.9	92	86	2	253	43	16	7	32	1.76
1118660--1118702	17	2.3	18	80	15	52	74	0	0	25	0.82
1119088--1119155	28	2.4	29	80	11	70	27	1	4	66	1.20
1119095--1119149	20	2.8	20	78	15	69	27	1	1	69	1.09
1121133--1121209	23	3.2	23	80	10	82	50	3	6	38	1.47
1121160--1121204	12	3.6	12	77	11	54	48	6	8	35	1.61
1121153--1121204	26	2.0	25	92	3	86	50	5	7	36	1.55
1121206--1121253	25	1.9	25	87	8	71	60	14	0	25	1.34
1127998--1128024	10	2.7	10	100	0	54	59	0	40	0	0.98
1130011--1130083	33	2.2	33	97	0	137	41	15	17	26	1.89
1137302--1137408	34	3.1	34	78	7	119	37	14	17	29	1.90
1137603--1137725	34	3.6	33	78	8	131	37	14	17	30	1.90
1137108--1137712	301	2.0	301	100	0	1210	35	16	14	33	1.89
1139459--1139504	23	2.0	23	91	0	74	17	23	17	41	1.90
1141434--1141471	6	6.3	6	87	0	58	13	0	71	15	1.16
1149433--1149549	61	1.9	60	89	1	180	43	12	16	27	1.84
1152201--1152245	16	2.8	16	80	16	56	57	0	6	35	1.25
1155727--1155777	21	2.4	21	80	0	57	64	3	5	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1160630--1160722	45	2.1	45	95	0	168	29	11	23	35	1.90
1165786--1165832	19	2.5	19	100	0	94	42	0	0	57	0.98
1171309--1171339	10	3.1	10	95	0	53	38	0	3	58	1.15
1171653--1171685	16	1.9	18	88	11	52	45	0	0	54	0.99
1174789--1174818	13	2.3	13	94	0	51	63	10	0	26	1.26
1174912--1174970	17	3.5	16	76	17	57	67	0	11	20	1.21
1174922--1174991	33	2.1	33	86	2	95	74	0	7	18	1.04
1174922--1174977	18	3.2	18	82	7	71	71	0	8	19	1.12
1175132--1175174	11	3.9	11	84	6	52	0	18	2	79	0.85
1175132--1175175	21	2.1	21	83	8	54	0	18	2	79	0.83
1175904--1175946	20	2.1	20	83	12	52	76	2	4	16	1.05
1181747--1181805	29	2.0	29	83	0	73	23	5	16	54	1.62
1184266--1184310	16	2.8	16	80	16	56	57	0	6	35	1.25
1190025--1190069	23	2.0	23	95	4	83	31	8	33	26	1.87
1192607--1192699	45	2.1	45	95	0	168	29	11	23	35	1.90
1201658--1201696	2	20.0	2	89	5	62	48	0	2	48	1.15
1203276--1203306	10	3.1	10	95	0	53	38	0	3	58	1.15
1204399--1204453	21	2.7	20	77	8	58	74	5	1	18	1.10
1206748--1206777	13	2.3	13	94	0	51	63	10	0	26	1.26
1206871--1206929	17	3.5	16	76	17	57	67	0	11	20	1.21
1206881--1206950	34	2.1	33	84	7	88	72	0	7	20	1.07
1206881--1206937	17	3.2	18	80	9	64	70	0	8	21	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206909--1206956	12	3.8	12	77	17	53	79	0	2	18	0.84
1206907--1206956	26	1.9	26	88	8	75	78	0	2	20	0.86
1206979--1207033	22	2.5	22	93	0	92	54	18	9	18	1.69
1207112--1207159	23	2.0	25	84	8	64	0	20	2	77	0.88
1207899--1207941	19	2.1	21	84	16	56	76	2	4	16	1.05
1208235--1208330	49	2.0	49	80	0	111	46	13	11	28	1.78
1209419--1209452	15	2.3	15	90	10	52	2	17	0	79	0.86
1225035--1225075	11	3.5	12	80	12	50	36	0	0	63	0.95
1225035--1225082	24	2.1	22	88	7	69	35	2	0	62	1.07
1225035--1225083	13	4.1	12	82	10	57	34	2	0	63	1.06
1226072--1226115	20	2.2	20	88	8	63	45	0	2	52	1.13
1226083--1226124	21	2.0	21	81	9	50	47	2	0	50	1.14
1226923--1226963	20	2.0	20	90	0	64	41	4	0	53	1.22
1226930--1226974	20	2.2	20	88	0	63	35	4	2	57	1.31
1232818--1232872	26	2.1	27	86	10	78	29	5	0	65	1.15
1233134--1233308	56	3.2	54	70	16	162	50	0	4	44	1.24
1233148--1233297	28	5.4	28	63	21	75	52	0	3	43	1.22
1233140--1233308	23	7.7	22	64	19	77	52	0	3	43	1.23
1233082--1233311	109	2.1	112	95	3	414	50	0	3	44	1.23
1238799--1238839	21	1.9	22	90	5	66	43	2	0	53	1.13
1238854--1238912	23	2.6	23	83	5	66	18	8	0	72	1.09
1238877--1238914	12	3.2	12	81	7	51	15	7	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241397--1241431	18	1.9	18	88	0	52	54	2	11	31	1.51
1246055--1246085	2	15.5	2	100	0	62	51	0	48	0	1.00
1248832--1248856	12	2.1	12	100	0	50	44	0	8	48	1.32
1249977--1250006	3	10.0	3	100	0	60	33	0	0	66	0.92
1254920--1254977	28	2.1	28	93	0	98	63	0	15	20	1.30
1257695--1257725	2	15.5	2	100	0	62	51	0	0	48	1.00
1259467--1259551	32	2.4	38	83	11	110	43	5	7	43	1.56
1260134--1260172	20	1.9	21	89	5	62	41	0	0	58	0.98
1260651--1260746	29	3.3	28	72	17	79	48	0	0	51	1.00
1260702--1260763	19	3.0	22	80	19	71	54	0	0	45	0.99
1260690--1260763	19	3.6	21	78	19	68	54	0	0	45	1.00
1260724--1260757	18	1.9	18	88	5	52	61	0	0	38	0.96
1262667--1262699	14	2.4	14	95	5	59	39	0	3	57	1.14
1263652--1263715	30	2.1	30	94	0	110	31	9	25	34	1.87
1264133--1264212	35	2.3	35	82	4	99	67	1	3	27	1.15
1276309--1276341	14	2.4	14	95	5	59	39	0	3	57	1.14
1277296--1277358	29	2.1	30	91	2	101	30	9	25	34	1.88
1277819--1277851	11	2.8	12	90	9	50	81	0	3	15	0.80
1278034--1278073	19	2.0	20	85	4	55	45	2	0	52	1.14
1288190--1288250	32	1.9	32	83	6	79	34	6	13	45	1.69
1293742--1293787	2	23.0	2	100	0	92	50	50	0	0	1.00
1302130--1302169	19	2.1	19	95	0	71	42	22	5	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304681--1304814	65	2.0	66	98	1	261	43	7	11	37	1.70
1306622--1306877	126	2.0	126	97	0	485	29	14	14	40	1.87
1309837--1309878	22	1.9	22	90	0	66	45	7	14	33	1.72
1310920--1310951	5	6.6	5	92	7	57	81	0	0	18	0.70
1310920--1311014	19	5.1	18	74	12	75	73	5	1	20	1.08
1311087--1311120	10	3.3	11	92	8	54	52	5	0	41	1.25
1312012--1312049	10	3.5	11	85	7	51	44	2	0	52	1.14
1318999--1319023	2	12.5	2	100	0	50	48	0	0	52	1.00
1319220--1319255	2	18.0	2	94	0	63	47	0	2	50	1.15
1340266--1340303	19	2.1	18	90	5	58	36	26	5	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109