genome.fa.s35.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  10  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1671838--1671890	24	2.2	24	83	6	63	54	5	3	35	1.42
1671850--1671919	30	2.3	30	78	4	79	57	8	4	30	1.48
1672339--1672373	17	2.2	16	90	10	54	77	2	2	17	1.02
1674941--1675008	34	2.1	31	83	8	82	63	1	2	32	1.18
1675369--1675421	25	2.1	25	86	6	72	9	9	1	79	1.02
1675356--1675427	12	5.9	12	80	13	60	11	9	1	77	1.05
1677324--1677363	21	1.9	21	85	10	55	37	0	2	60	1.11
1684523--1684582	23	2.5	24	81	5	86	55	3	5	36	1.38
1685376--1685427	6	8.7	6	84	0	50	57	1	5	34	1.33
1685343--1685421	24	3.5	24	78	11	69	59	3	5	31	1.37
1687585--1687629	18	2.6	17	78	3	54	46	4	0	48	1.22
1687608--1687658	17	2.8	18	73	8	50	39	3	0	56	1.18
1688448--1688521	30	2.5	29	78	20	73	59	1	1	37	1.14
1688860--1688894	4	8.8	4	87	0	52	22	5	0	71	1.07
1689754--1689798	22	2.1	22	83	4	56	31	0	2	66	1.04
1691331--1691421	2	47.5	2	87	8	136	53	0	0	46	1.00
1694001--1694025	2	12.5	2	100	0	50	52	0	0	48	1.00
1694853--1694900	21	2.3	20	76	13	53	37	2	4	56	1.30
1697053--1697112	23	2.5	24	81	5	86	55	3	5	36	1.38
1697658--1697687	11	2.8	11	95	5	53	16	0	16	66	1.25
1697887--1697965	24	3.5	24	78	11	69	59	3	5	31	1.37
1699213--1699250	19	2.0	19	100	0	76	42	5	26	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1701015--1701082	32	2.1	32	83	8	84	61	1	1	35	1.14
1701433--1701496	4	16.8	4	75	15	55	18	3	0	78	0.89
1701461--1701496	6	6.2	6	93	6	65	13	0	0	86	0.58
1702345--1702390	22	2.1	23	84	8	60	32	0	2	65	1.05
1710943--1710989	20	2.3	20	88	0	67	17	4	25	53	1.62
1711103--1711163	31	1.9	32	83	3	79	39	13	8	39	1.74
1712017--1712072	15	3.9	14	77	15	51	44	0	5	50	1.25
1712031--1712072	16	2.9	15	80	19	54	47	0	4	47	1.23
1714130--1714169	21	1.9	21	85	10	55	37	0	0	62	0.95
1721359--1721418	23	2.5	24	78	5	77	53	3	5	38	1.39
1722222--1722274	24	2.2	24	83	6	63	54	5	3	35	1.42
1722234--1722303	30	2.3	30	78	4	79	57	8	4	30	1.48
1725749--1725783	4	8.8	4	87	0	52	22	5	0	71	1.07
1725781--1725839	24	2.5	23	81	13	66	0	15	1	83	0.74
1725804--1725838	13	2.7	13	87	12	54	0	11	0	88	0.51
1725781--1725839	14	4.4	13	74	14	57	0	15	1	83	0.74
1726889--1727291	219	1.8	218	81	8	496	44	6	11	37	1.67
1728291--1728343	2	28.0	2	81	11	58	49	3	0	47	1.19
1735484--1735543	31	1.9	31	82	0	75	38	11	8	41	1.72
1735775--1735826	25	2.1	25	92	0	86	51	11	0	36	1.38
1736374--1736455	33	2.7	29	74	20	76	48	0	4	46	1.23
1736390--1736443	14	3.9	14	77	20	51	44	0	5	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738492--1738538	23	2.0	25	84	16	64	46	0	0	53	1.00
1738518--1738559	17	2.2	20	80	12	54	50	0	0	50	1.00
1741508--1741540	2	17.0	2	93	6	59	51	0	0	48	1.00
1743432--1743460	2	14.5	2	100	0	58	48	0	0	51	1.00
1743985--1744053	23	3.0	23	93	2	111	52	0	2	44	1.16
1744501--1744594	48	2.1	43	84	9	116	26	4	4	64	1.30
1744656--1744712	21	2.7	22	78	10	57	38	7	5	49	1.53
1744783--1745249	162	2.9	160	86	4	598	25	7	7	59	1.51
1753423--1753458	14	2.4	16	82	17	51	77	0	8	13	0.98
1753724--1753828	55	1.9	53	90	3	165	46	7	21	23	1.77
1755445--1755489	22	2.0	22	86	0	63	17	8	0	73	1.08
1757792--1757816	1	25.0	1	100	0	50	100	0	0	0	0.00
1758518--1758549	3	10.7	3	93	0	55	31	0	3	65	1.08
1769684--1769720	18	2.2	18	85	9	51	45	0	2	51	1.15
1772096--1772139	22	2.0	22	95	0	79	31	11	13	43	1.80
1772286--1772344	25	2.5	23	88	5	82	13	25	18	42	1.87
1772519--1772553	18	1.9	18	88	0	52	22	14	25	37	1.92
1775996--1776039	22	2.0	22	100	0	88	31	9	13	45	1.75
1776435--1776500	22	3.0	21	86	4	87	33	9	13	43	1.76
1783005--1783067	31	2.0	31	100	0	126	31	15	9	42	1.79
1792563--1792603	21	2.0	21	85	9	57	48	2	0	48	1.14
1792962--1792997	2	18.0	2	94	0	63	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802990--1803023	12	2.8	12	90	4	50	0	2	17	79	0.86
1805399--1805430	3	10.7	3	100	0	64	65	0	0	34	0.93
1817541--1817591	22	2.3	22	100	0	102	27	39	15	17	1.90
1818177--1818379	14	13.8	14	67	14	88	46	33	0	19	1.54
1818204--1818381	30	6.0	30	74	9	134	46	33	0	19	1.54
1818397--1818446	23	2.2	23	81	0	55	46	22	4	28	1.70
1818817--1818862	25	1.9	25	86	8	69	63	0	2	34	1.07
1818832--1818886	21	2.7	20	77	11	58	63	0	3	32	1.12
1820637--1821115	172	2.8	165	80	10	404	36	11	7	43	1.70
1821946--1821988	8	4.9	9	83	13	54	13	9	0	76	1.01
1821947--1821988	18	2.4	18	84	4	59	14	9	0	76	1.02
1822696--1822724	13	2.1	14	93	6	51	48	0	0	51	1.00
1827474--1827507	18	1.9	17	88	5	50	61	2	0	35	1.11
1833111--1833150	17	2.3	18	86	8	64	50	20	5	25	1.68
1837805--1837976	63	2.7	63	82	7	195	38	8	18	34	1.81
1838841--1839078	60	4.1	60	82	4	279	33	9	6	50	1.61
1838840--1839077	117	2.0	117	90	1	379	33	9	6	50	1.62
1838927--1839140	60	3.2	67	70	18	169	35	9	5	49	1.59
1839070--1839098	14	2.0	15	93	6	51	37	0	6	55	1.27
1839012--1839148	71	1.9	71	83	5	179	35	7	5	51	1.54
1839123--1839190	32	2.2	31	86	5	102	47	2	5	44	1.42
1839930--1839963	17	1.9	17	88	5	50	8	8	8	73	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840268--1840298	5	6.4	5	92	7	55	61	0	0	38	0.96
1840269--1840299	14	2.2	14	100	0	62	58	0	0	41	0.98
1840308--1840337	3	9.7	3	92	7	51	66	0	3	30	1.07
1841689--1841735	8	5.6	8	82	7	58	8	6	0	85	0.75
1841689--1841735	17	2.8	17	86	0	67	8	6	0	85	0.75
1841689--1841738	9	5.9	9	80	19	54	10	8	0	82	0.86
1842112--1842145	10	3.3	10	87	4	50	2	11	0	85	0.71
1842111--1842152	21	2.0	21	81	9	50	2	16	0	80	0.81
1842112--1842159	25	1.9	25	82	0	60	4	18	0	77	0.93
1847830--1847942	60	1.9	58	89	3	172	30	8	7	53	1.61
1847934--1847962	14	2.0	15	93	6	51	37	0	6	55	1.27
1847876--1848012	71	1.9	71	85	5	188	34	7	5	52	1.53
1847898--1848037	71	2.0	70	80	10	160	37	7	4	50	1.51
1847987--1848054	32	2.2	32	86	5	104	47	2	5	44	1.42
1848871--1848909	19	2.0	20	85	14	55	7	10	10	71	1.30
1849152--1849200	3	16.0	3	95	4	89	65	0	2	32	1.04
1849690--1849726	18	2.1	18	89	0	56	45	10	13	29	1.77
1856088--1856121	14	2.2	16	90	10	54	61	0	0	38	0.96
1856154--1856197	23	1.9	23	81	9	54	59	2	0	38	1.10
1856456--1856494	19	2.1	19	85	0	51	53	0	2	43	1.14
1865469--1865506	18	2.1	19	85	9	53	63	0	0	36	0.95
1866336--1866404	30	2.3	30	82	9	88	39	7	0	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866452--1866490	21	1.9	21	89	5	62	53	0	5	41	1.23
1869485--1869542	30	1.9	30	82	6	73	18	18	25	36	1.95
1874538--1874599	31	2.0	31	84	6	81	45	19	11	24	1.83
1887905--1887942	15	2.5	15	91	0	58	55	5	39	0	1.23
1888343--1888371	5	5.8	5	100	0	58	17	0	0	82	0.66
1896621--1896655	14	2.4	15	90	4	54	17	5	17	60	1.55
1901006--1901050	2	22.5	2	86	0	63	44	48	6	0	1.29
1906005--1906092	41	2.1	42	89	4	133	39	6	7	45	1.60
1910633--1910686	23	2.2	25	83	6	67	35	1	3	59	1.26
1911958--1912020	25	2.4	28	79	15	71	47	1	0	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109