genome.fa.s35.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  83  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16761908--16761958	26	2.0	26	96	0	93	50	15	3	29	1.62
16765438--16765501	27	2.4	26	78	16	78	35	1	4	57	1.29
16765979--16766140	81	2.0	81	100	0	324	40	9	3	45	1.55
16768629--16768701	11	7.0	10	75	21	53	69	0	2	27	1.02
16768660--16768701	3	14.3	3	80	14	52	69	0	2	28	1.01
16768660--16768703	16	2.8	16	86	10	63	68	0	2	29	1.02
16768694--16768956	16	18.3	13	70	17	141	47	36	0	14	1.50
16768704--16768798	29	3.3	29	88	2	147	45	40	1	13	1.51
16768741--16768930	45	4.3	45	80	12	205	46	40	0	13	1.47
16768785--16768956	29	5.9	29	89	0	236	48	36	0	14	1.49
16768712--16768872	74	2.2	73	90	1	250	45	40	0	13	1.47
16768712--16768928	16	14.8	16	71	17	166	46	39	0	12	1.49
16770804--16770835	2	16.0	2	100	0	64	0	50	0	50	1.00
16774306--16774338	17	2.0	17	88	5	50	27	0	0	72	0.85
16778780--16778828	22	2.3	21	89	6	80	44	6	0	48	1.27
16778967--16778997	2	15.5	2	100	0	62	51	0	0	48	1.00
16780373--16780516	44	3.3	44	83	7	163	22	11	20	45	1.83
16780429--16780534	43	2.6	41	83	8	135	23	13	21	41	1.88
16780429--16780553	43	3.1	39	79	13	119	24	12	21	41	1.88
16780530--16780637	43	2.5	44	83	4	130	23	16	18	41	1.90
16780831--16780945	3	38.3	3	73	17	80	27	2	0	68	1.08
16780835--16780935	27	3.8	26	77	11	98	28	2	0	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16781217--16781242	9	2.9	9	100	0	52	46	0	11	42	1.40
16781938--16781976	17	2.3	17	81	0	51	82	2	0	15	0.79
16785522--16785587	32	2.1	33	94	5	118	46	0	0	53	1.00
16785852--16785890	21	1.9	20	89	5	60	33	5	0	61	1.18
16791148--16791431	139	2.0	139	91	2	455	41	11	11	34	1.78
16795660--16795689	9	3.3	9	90	0	51	53	10	3	33	1.51
16798260--16798320	20	3.0	20	87	0	86	29	18	16	36	1.92
16801349--16801378	9	3.3	9	90	0	51	53	10	3	33	1.51
16803952--16804012	20	3.0	20	87	0	86	29	18	16	36	1.92
16804141--16804198	22	2.6	22	75	5	64	39	15	12	32	1.84
16805381--16805430	18	2.8	18	84	0	64	6	18	0	76	0.99
16805381--16805453	20	3.6	19	77	15	67	5	16	0	78	0.94
16811532--16811575	21	2.2	21	84	8	56	56	4	20	18	1.58
16820277--16820461	42	4.5	41	78	8	144	28	9	17	44	1.81
16820277--16820485	41	5.1	41	77	8	165	29	10	16	43	1.82
16820313--16820485	40	4.2	40	77	6	116	31	10	15	42	1.81
16820786--16820906	19	6.6	18	71	11	68	23	2	1	71	1.07
16820809--16820884	3	24.7	3	77	15	75	30	2	1	65	1.14
16820784--16820888	9	11.4	9	79	9	81	25	1	1	70	1.08
16820784--16820906	12	9.8	12	69	23	60	24	2	1	71	1.07
16821358--16821402	16	2.9	15	87	9	63	64	2	33	0	1.06
16821725--16821776	11	4.8	11	79	11	54	17	0	1	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16821776--16821914	72	1.9	71	85	2	188	48	7	10	33	1.65
16821798--16822091	132	2.3	130	86	8	402	46	5	9	37	1.60
16821958--16821997	15	2.6	15	92	4	62	57	0	0	42	0.98
16822119--16822211	29	3.2	27	71	18	80	47	5	11	35	1.63
16833639--16833685	16	2.9	16	87	9	69	40	6	4	48	1.48
16840597--16840626	14	2.1	14	93	0	51	60	10	0	30	1.30
16842173--16842205	15	2.2	15	94	0	57	57	0	0	42	0.98
16842985--16843012	2	14.0	2	100	0	56	50	0	0	50	1.00
16843270--16843311	17	2.4	17	84	11	50	26	0	0	73	0.83
16843271--16843321	8	6.2	8	75	11	50	23	0	0	76	0.79
16843399--16843436	20	1.9	20	89	10	60	73	0	0	26	0.83
16843404--16843476	9	8.1	9	74	8	51	69	4	1	24	1.13
16843818--16843877	10	6.5	10	73	23	60	68	0	1	30	0.99
16843820--16843877	15	3.9	15	76	13	57	68	0	1	29	0.99
16843870--16843941	28	2.5	28	76	14	76	50	29	1	19	1.56
16844067--16844108	15	2.8	15	88	0	66	50	38	0	11	1.40
16844039--16844303	30	8.9	31	72	13	139	45	31	3	20	1.66
16844031--16844360	87	3.8	87	78	8	327	45	31	2	19	1.65
16844140--16844195	16	3.6	16	71	9	53	46	35	0	17	1.49
16844046--16844359	30	10.8	29	70	15	96	46	31	2	19	1.65
16844313--16844359	14	3.1	15	81	9	60	51	36	0	12	1.40
16849095--16849149	3	18.3	3	100	0	110	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16852304--16852435	64	2.1	63	81	8	151	40	12	10	36	1.78
16853067--16853103	2	18.0	2	94	5	65	48	2	0	48	1.15
16855845--16855998	82	1.9	83	86	4	222	29	11	13	46	1.78
16856592--16856628	13	2.8	13	87	0	56	48	0	2	48	1.15
16856696--16856735	20	2.0	20	85	0	53	40	2	2	55	1.27
16856741--16856811	9	8.2	9	72	18	53	49	0	1	49	1.09
16856741--16856811	26	2.8	26	87	4	101	49	0	1	49	1.09
16856775--16856814	15	2.6	16	84	4	55	50	0	2	47	1.14
16856902--16857067	23	7.0	23	71	17	110	44	0	0	54	1.04
16856921--16857077	18	8.6	18	72	19	121	44	0	1	54	1.08
16856902--16857077	13	13.5	14	64	27	68	44	0	1	54	1.07
16857918--16857950	17	2.1	17	88	11	52	27	6	9	57	1.53
16859059--16859098	19	2.0	20	85	4	55	57	2	0	40	1.12
16859967--16860001	10	3.5	10	92	0	61	54	0	0	45	0.99
16859993--16860040	15	3.0	16	78	9	53	56	4	0	39	1.19
16862463--16862536	37	2.0	37	91	0	121	47	6	0	45	1.29
16867021--16867057	18	2.1	18	89	0	56	48	21	5	24	1.71
16867713--16868648	333	2.8	332	87	1	1347	39	11	12	36	1.80
16878552--16878602	21	2.5	21	90	3	77	47	0	0	52	1.00
16880973--16881004	16	2.0	16	100	0	64	37	6	18	37	1.76
16882066--16882125	24	2.5	24	81	10	61	53	5	3	38	1.39
16882577--16882622	22	2.1	22	84	15	60	39	2	4	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16883084--16883112	15	2.0	15	93	6	51	68	0	0	31	0.89
16887551--16887618	29	2.3	29	100	0	136	45	20	4	29	1.70
16887997--16888035	21	1.9	19	90	10	60	61	2	0	35	1.10
16888747--16888816	34	2.1	34	91	0	113	40	15	7	37	1.75
16894282--16894517	62	3.8	61	76	10	203	35	12	11	40	1.79
16901341--16901372	11	2.9	11	95	0	55	43	12	0	43	1.42
16901411--16901463	6	8.8	6	93	0	52	67	15	0	16	1.23
16901441--16901467	3	9.0	3	100	0	54	66	0	0	33	0.92
16904149--16904206	22	2.4	24	78	21	68	29	5	15	50	1.66
16904176--16904312	64	2.1	66	85	4	181	33	11	9	45	1.73
16904210--16904359	64	2.3	63	81	8	169	36	12	9	42	1.75
16904179--16904359	64	2.8	62	76	10	161	34	11	10	43	1.76
16904892--16904917	11	2.4	11	100	0	52	34	0	26	38	1.57
16908451--16908604	82	1.9	83	83	4	204	27	11	14	46	1.79
16909201--16909237	13	2.8	13	87	0	56	48	0	2	48	1.15
16909303--16909341	19	2.0	20	85	5	53	41	2	2	53	1.28
16909355--16909419	15	4.5	15	75	23	68	50	0	0	49	1.00
16909347--16909416	26	2.8	26	91	6	110	50	0	0	50	1.00
16909347--16909416	9	8.2	9	76	16	69	50	0	0	50	1.00
16909380--16909476	19	5.6	17	79	13	76	53	0	1	45	1.07
16909406--16909477	20	3.9	19	70	13	62	55	0	1	43	1.08
16909420--16909449	13	2.3	13	94	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16909522--16909622	15	6.7	15	72	14	82	44	1	0	52	1.19
16909505--16909594	23	4.0	23	79	11	96	43	2	1	53	1.20
16909506--16909684	15	12.5	14	70	21	79	44	1	1	53	1.15
16909510--16909665	23	6.8	23	71	16	67	44	1	0	53	1.13
16909506--16909684	12	13.5	14	66	25	63	44	1	1	53	1.15
16909589--16909673	18	4.6	19	78	10	88	44	0	0	55	0.99
16912385--16912421	13	2.8	13	95	0	65	45	0	2	51	1.15
16912487--16912527	19	2.1	20	86	4	57	43	2	0	53	1.13
16912539--16912617	15	4.7	16	75	13	70	53	0	0	46	1.00
16912539--16912622	32	2.4	35	83	13	104	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109