genome.fa.s35.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  96  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19201958--19202334	41	9.1	41	89	3	560	22	16	23	37	1.94
19202341--19202397	1	57.0	1	82	0	60	89	7	0	3	0.58
19202341--19202404	9	7.3	9	82	8	71	87	7	0	4	0.66
19202565--19202599	6	5.8	6	90	10	54	20	0	0	80	0.72
19202565--19202688	11	10.9	11	68	16	58	24	2	2	70	1.11
19202695--19202750	28	2.0	27	82	3	67	28	3	1	66	1.19
19203604--19203672	16	4.4	15	72	20	61	13	7	2	76	1.10
19203654--19203695	22	1.9	22	85	9	59	14	11	2	71	1.24
19203710--19204117	59	6.7	60	77	12	299	43	6	13	35	1.70
19207249--19207294	23	1.9	25	86	8	69	56	17	10	15	1.67
19208969--19209025	25	2.2	27	81	12	66	49	1	8	40	1.44
19209741--19209930	83	2.3	82	91	1	317	25	17	21	35	1.95
19211876--19211939	27	2.3	28	78	13	69	50	0	1	48	1.10
19211875--19211930	26	2.1	27	83	3	69	50	0	1	48	1.11
19214321--19214372	2	27.5	2	88	11	83	48	0	0	51	1.00
19221599--19221932	62	5.5	60	73	13	229	34	9	9	47	1.68
19221645--19221939	124	2.4	119	84	7	362	34	8	8	48	1.65
19221989--19222029	12	3.4	12	82	0	55	70	12	2	14	1.26
19222007--19222044	8	4.9	8	83	3	51	76	10	0	13	1.02
19221989--19222053	24	2.7	24	83	4	69	72	10	3	13	1.23
19222002--19222072	28	2.6	27	80	14	74	74	8	1	15	1.12
19222848--19222877	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19224573--19224705	61	2.2	62	83	4	162	43	11	7	37	1.69
19230308--19230338	2	15.5	2	100	0	62	51	0	0	48	1.00
19233026--19233052	5	5.4	5	100	0	54	0	18	0	81	0.69
19238850--19238913	28	2.3	26	84	7	74	15	1	7	75	1.11
19238875--19238929	20	2.7	21	81	13	62	14	0	10	74	1.07
19238884--19238935	18	2.9	17	74	17	52	15	0	13	71	1.15
19238941--19238967	3	9.0	3	100	0	54	33	0	0	66	0.92
19239485--19239543	21	2.8	20	87	5	73	69	6	1	22	1.21
19251424--19251523	37	2.7	35	73	8	92	29	15	17	39	1.89
19251732--19251912	40	4.5	40	80	2	202	29	13	15	41	1.85
19251732--19251912	80	2.3	80	85	1	247	29	13	15	41	1.85
19253073--19253101	12	2.3	13	94	5	51	0	13	0	86	0.58
19253099--19253159	27	2.2	29	91	8	101	18	1	8	72	1.18
19253091--19253169	23	3.2	23	77	19	79	15	2	8	73	1.18
19253173--19253201	3	9.7	3	100	0	58	34	0	31	34	1.58
19253201--19253235	3	11.7	3	100	0	70	34	0	0	65	0.93
19253740--19253788	21	2.4	20	83	6	62	67	6	0	26	1.14
19253741--19253783	21	2.0	21	90	0	68	72	6	0	20	1.08
19261669--19261787	61	2.0	61	91	0	193	31	5	2	60	1.32
19265384--19265428	23	2.0	23	95	0	81	22	11	8	57	1.60
19266871--19266898	3	9.3	3	100	0	56	67	0	0	32	0.91
19275364--19275414	25	2.0	26	85	11	70	50	7	21	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19275558--19275600	22	2.0	22	95	0	77	44	11	11	32	1.77
19284107--19284158	18	2.9	18	77	8	61	69	0	3	26	1.06
19285885--19285943	22	2.6	22	91	2	91	45	0	1	52	1.10
19293444--19293494	3	17.0	3	95	0	93	31	0	1	66	1.03
19295779--19295819	20	2.0	21	90	4	66	58	0	0	41	0.98
19298470--19298522	10	5.4	10	81	4	63	15	3	3	77	1.06
19298470--19298522	5	10.8	5	77	4	54	15	3	3	77	1.06
19298438--19298525	29	3.0	29	90	8	126	13	4	4	77	1.08
19304767--19304806	20	2.0	20	85	9	55	62	10	12	15	1.54
19313415--19313463	2	25.5	2	83	8	66	2	44	0	53	1.12
19318135--19318173	11	3.5	11	78	0	51	51	0	2	46	1.14
19320393--19320449	21	2.7	22	78	5	64	63	0	7	29	1.21
19322495--19322573	38	2.1	38	87	0	113	43	3	5	48	1.43
19322800--19322859	23	2.7	23	67	23	56	51	0	3	45	1.17
19322974--19323018	15	2.9	16	90	6	74	48	0	2	48	1.13
19327891--19327936	21	2.1	22	88	8	67	32	21	2	43	1.65
19328688--19328727	19	2.1	19	85	0	53	77	2	10	10	1.08
19329317--19329359	21	2.0	21	86	8	61	32	18	0	48	1.48
19329536--19329581	23	2.0	23	100	0	92	34	21	0	43	1.53
19331692--19331721	10	3.1	10	90	9	53	30	0	0	70	0.88
19331784--19331825	22	1.9	22	85	0	57	54	4	2	38	1.34
19331864--19331912	21	2.4	21	80	13	57	55	0	2	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19331991--19332032	8	4.9	9	80	11	52	45	0	0	54	0.99
19331981--19332058	25	3.2	25	78	12	72	46	2	0	51	1.14
19331991--19332056	24	2.7	23	88	9	87	43	1	0	54	1.09
19332144--19332182	20	2.0	20	84	0	51	43	12	2	41	1.56
19334737--19334769	14	2.4	14	90	5	50	57	9	0	33	1.30
19338633--19338666	15	2.3	15	89	0	50	38	26	14	20	1.91
19347471--19347539	28	2.4	30	75	20	76	50	1	0	47	1.09
19348756--19348781	2	13.0	2	100	0	52	50	0	0	50	1.00
19348812--19348909	49	2.0	49	100	0	196	28	10	14	46	1.77
19349244--19349280	11	3.5	11	82	17	51	37	0	8	54	1.30
19349239--19349296	18	3.1	17	75	20	53	39	0	8	51	1.33
19349244--19349296	21	2.7	20	83	13	65	39	0	9	50	1.35
19349235--19349314	40	2.1	37	83	6	97	37	0	7	55	1.29
19350046--19350080	15	2.4	15	90	4	54	68	0	0	31	0.90
19350046--19350080	7	4.9	7	86	6	52	68	0	0	31	0.90
19350258--19350313	28	2.0	28	96	0	103	26	10	14	48	1.76
19351087--19351137	21	2.4	21	83	6	59	54	0	0	45	0.99
19352350--19352418	35	1.9	36	85	8	97	50	0	0	49	1.00
19352467--19352529	18	3.7	18	81	12	78	39	1	3	55	1.25
19352467--19352529	33	1.9	33	90	0	99	39	1	3	55	1.25
19353801--19353855	25	2.2	25	80	0	65	43	0	1	54	1.10
19354509--19354558	16	3.4	14	73	26	50	26	2	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19355387--19355421	2	18.0	2	94	5	63	51	0	0	48	1.00
19368894--19368959	33	2.0	33	88	5	98	43	0	10	45	1.38
19368993--19369048	17	3.4	17	76	11	55	39	0	0	60	0.97
19369057--19369110	26	2.0	27	82	3	65	37	0	1	61	1.07
19371180--19371606	231	1.8	231	82	4	549	22	27	13	37	1.91
19371180--19371729	231	2.4	230	79	7	528	23	28	13	35	1.92
19372340--19372370	15	2.0	16	93	6	55	19	25	16	38	1.92
19374041--19374072	16	2.1	16	88	11	50	75	0	25	0	0.81
19375787--19375893	31	3.3	31	68	23	78	47	2	0	49	1.16
19376918--19376947	2	15.0	2	100	0	60	50	0	0	50	1.00
19377551--19377610	27	2.2	28	87	3	95	53	0	0	46	1.00
19377541--19377627	27	3.1	27	77	12	79	49	2	0	48	1.13
19381257--19381291	18	1.9	18	88	0	52	37	5	5	51	1.50
19381313--19381402	37	2.4	38	82	10	98	42	0	2	55	1.12
19382701--19382744	20	2.3	19	84	11	54	22	4	0	72	1.02
19383451--19383538	29	3.0	29	78	6	72	42	0	4	53	1.21
19383651--19383685	17	2.1	17	89	10	54	34	5	0	60	1.21
19393658--19393715	24	2.4	24	88	0	89	37	3	44	13	1.61
19393874--19393926	27	2.0	27	100	0	106	33	15	37	13	1.86
19399293--19399391	46	2.1	46	81	12	112	41	2	6	50	1.38
19404009--19404042	17	2.0	17	88	11	52	55	11	11	20	1.67
19405842--19405884	22	2.0	22	85	0	59	39	2	11	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19410349--19410388	21	1.9	21	85	10	55	52	0	5	42	1.23
19414546--19414575	12	2.5	12	88	0	51	40	0	33	26	1.57
19425130--19425164	18	1.9	18	88	11	54	37	0	0	62	0.95
19425223--19425274	27	1.9	27	84	7	70	48	3	0	48	1.20
19425235--19425274	12	3.1	12	83	16	53	47	2	0	50	1.14
19425978--19426268	125	2.3	125	78	8	297	41	7	7	42	1.61
19425977--19426268	63	4.7	63	75	7	215	41	7	8	42	1.62
19427040--19427089	12	4.1	12	76	20	50	62	4	0	34	1.14
19427467--19427491	13	1.9	13	100	0	50	0	32	4	64	1.12
19432868--19433022	55	3.2	47	75	18	154	53	3	7	34	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109