genome.fa.s35.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  37  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5550000--5550029	16	1.9	16	93	6	53	23	0	3	73	0.98
5550325--5550358	15	2.2	16	89	5	52	41	2	0	55	1.15
5550325--5550372	15	3.0	15	82	11	51	47	2	0	50	1.12
5550521--5550553	2	17.5	2	87	12	52	51	0	0	48	1.00
5558702--5558735	17	1.9	18	88	5	52	64	2	8	23	1.36
5560805--5560840	2	18.0	2	100	0	72	50	0	0	50	1.00
5561342--5561397	29	2.0	28	85	3	76	48	1	1	48	1.22
5563010--5563067	29	2.0	29	86	6	82	37	0	1	60	1.07
5584248--5584290	22	2.0	22	86	4	61	46	11	4	37	1.61
5593217--5593253	18	2.1	18	90	5	58	29	5	2	62	1.31
5593197--5593359	58	2.8	58	83	7	188	38	9	5	46	1.60
5593421--5593457	3	12.0	3	94	5	65	67	0	0	32	0.91
5594329--5594479	38	4.9	30	76	20	125	60	0	5	33	1.26
5594337--5594415	38	2.1	38	95	0	140	55	0	8	35	1.31
5594374--5594464	30	3.4	25	78	18	87	62	1	4	31	1.22
5594387--5594485	27	3.7	27	81	9	121	65	1	3	30	1.14
5594417--5594527	27	4.7	23	75	19	61	64	0	4	29	1.19
5594417--5594525	24	4.7	23	77	7	96	65	0	4	29	1.19
5594387--5594531	47	2.9	49	82	11	145	65	0	4	29	1.16
5604239--5604289	25	2.0	25	100	0	102	39	13	11	35	1.82
5605307--5605363	24	2.3	25	77	14	64	47	5	5	42	1.48
5608702--5608769	12	5.7	12	75	13	59	44	1	2	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5608808--5608844	19	1.9	19	94	0	65	29	2	0	67	1.04
5609106--5609138	5	6.8	5	89	6	50	0	0	15	84	0.61
5609834--5609887	28	2.0	27	82	10	65	50	1	0	48	1.11
5610958--5610987	15	2.0	15	93	0	51	83	0	0	16	0.65
5611917--5611949	2	16.5	2	93	0	57	51	3	0	45	1.16
5611921--5611953	10	3.3	10	95	0	57	51	6	0	42	1.26
5616953--5617002	25	2.0	24	85	11	66	42	6	4	48	1.46
5617311--5617351	4	10.0	4	89	5	64	70	2	0	26	0.99
5618260--5618312	23	2.3	23	80	0	61	58	7	9	24	1.55
5618587--5619066	45	10.8	45	77	7	376	45	15	13	26	1.82
5618648--5619066	132	3.1	136	76	11	391	45	14	13	26	1.81
5619386--5619428	21	2.0	21	86	0	59	32	18	13	34	1.90
5619554--5619683	49	2.8	48	72	18	112	38	16	12	32	1.86
5619718--5619767	21	2.4	21	86	0	73	36	16	10	38	1.82
5621231--5621267	16	2.2	18	90	9	60	2	8	5	83	0.88
5623957--5624009	23	2.3	23	83	0	70	58	9	9	22	1.58
5624704--5624743	21	2.0	21	85	5	55	60	2	27	10	1.42
5631420--5631445	7	3.7	7	100	0	52	15	11	15	57	1.65
5636057--5636082	2	13.0	2	100	0	52	50	0	0	50	1.00
5644233--5644265	2	16.5	2	100	0	66	48	0	0	51	1.00
5646400--5646498	16	6.5	15	66	13	51	51	1	1	46	1.14
5646624--5646657	18	2.0	17	88	11	52	35	5	0	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5647986--5648114	13	9.0	15	75	11	103	48	0	0	50	1.06
5647961--5648129	75	2.5	68	80	10	177	49	0	0	50	1.05
5648037--5648132	5	19.8	5	70	23	55	46	0	0	53	1.00
5648003--5648131	36	3.7	35	78	15	117	48	0	0	50	1.06
5647738--5648088	177	2.0	175	83	9	437	46	5	4	44	1.46
5647967--5648132	67	2.5	66	78	12	169	48	0	0	50	1.05
5647997--5648122	22	5.5	23	72	20	95	49	0	0	50	1.06
5647967--5648134	27	6.3	27	74	16	154	48	0	0	50	1.05
5649379--5649421	14	3.2	13	87	9	59	0	25	6	67	1.15
5649382--5649428	19	2.3	20	85	7	60	0	25	6	68	1.13
5656918--5656950	4	8.2	4	100	0	66	48	24	0	27	1.51
5660655--5660709	27	2.1	26	83	10	67	74	1	7	16	1.12
5661731--5661778	13	3.5	13	78	10	51	58	2	2	37	1.22
5662838--5662884	23	2.0	24	84	12	62	36	12	10	40	1.78
5663121--5663242	29	4.2	29	69	11	97	36	7	0	55	1.33
5663113--5663256	59	2.4	58	73	2	135	38	6	0	54	1.31
5664925--5664952	2	14.0	2	100	0	56	50	0	0	50	1.00
5666832--5666875	22	1.9	24	86	9	65	50	0	0	50	1.00
5666853--5666929	18	4.2	18	71	16	61	50	1	0	48	1.09
5667166--5667215	12	4.0	12	79	7	55	48	2	0	50	1.12
5667225--5667271	24	2.0	24	83	8	60	36	2	0	61	1.08
5671367--5671435	29	2.3	29	82	7	77	40	2	4	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5671421--5671498	30	2.6	30	85	4	95	39	5	3	51	1.42
5671687--5671764	29	2.8	29	79	15	83	38	1	0	60	1.05
5671708--5671771	29	2.3	26	82	12	74	39	1	1	57	1.17
5671792--5671894	30	3.5	29	74	2	98	54	1	3	39	1.30
5672948--5672976	3	9.7	3	100	0	58	31	0	0	68	0.89
5675230--5675292	29	2.1	31	91	5	103	44	20	1	33	1.61
5677348--5677380	4	8.2	4	100	0	66	27	0	24	48	1.51
5684913--5684959	19	2.3	21	85	7	62	68	6	25	0	1.13
5684927--5684954	14	2.0	14	100	0	56	64	7	28	0	1.20
5686176--5686355	8	22.5	8	68	16	72	50	0	0	48	1.09
5686173--5686355	28	6.2	29	71	22	100	50	0	0	48	1.09
5686175--5686358	35	5.5	33	74	14	128	50	0	0	48	1.09
5686175--5686360	82	2.2	83	83	8	216	50	0	0	48	1.09
5686193--5686358	19	9.2	18	69	23	66	49	0	0	49	1.09
5686181--5686345	42	4.0	41	75	8	163	49	0	0	49	1.09
5686411--5686467	16	3.7	15	75	15	53	49	0	3	47	1.18
5687861--5687926	28	2.4	28	80	9	75	46	0	1	51	1.10
5691376--5691505	65	2.0	65	96	0	242	39	17	13	30	1.88
5697743--5697804	18	3.6	18	68	23	53	69	4	1	24	1.17
5704549--5704588	19	2.1	19	100	0	80	57	5	17	20	1.58
5707024--5707054	2	16.0	2	93	6	55	51	0	0	48	1.00
5719065--5719130	30	2.2	31	83	2	80	30	9	3	57	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5719850--5719902	25	2.4	21	77	20	54	56	1	0	41	1.10
5720286--5720361	36	2.1	36	85	0	98	63	1	7	27	1.30
5722416--5722463	15	3.2	16	80	16	50	35	0	0	64	0.94
5727292--5727328	5	8.0	5	82	17	53	37	0	0	62	0.96
5727275--5727345	15	4.5	16	77	11	67	42	0	0	57	0.98
5728082--5728155	32	2.3	32	86	2	96	47	1	0	51	1.09
5728235--5728278	11	3.8	11	85	11	61	31	0	0	68	0.90
5741690--5741724	15	2.3	15	90	0	52	42	0	2	54	1.15
5741836--5741877	12	3.5	12	81	12	50	40	0	0	59	0.97
5741847--5741898	24	2.2	24	83	13	63	46	1	1	50	1.23
5742591--5742634	3	14.7	3	100	0	88	65	0	0	34	0.93
5748563--5748602	21	2.0	20	85	14	55	45	5	0	50	1.23
5748586--5748617	17	1.9	16	93	6	55	43	3	0	53	1.16
5749569--5749605	2	18.5	2	100	0	74	0	48	0	51	1.00
5749605--5749630	2	13.0	2	100	0	52	50	0	0	50	1.00
5750818--5750849	14	2.3	15	89	10	50	75	0	0	25	0.81
5763953--5763983	14	2.2	14	100	0	62	22	19	9	48	1.78
5765380--5765425	14	3.3	14	79	11	58	60	0	0	39	0.97
5776364--5776406	21	2.1	20	82	4	50	37	4	4	53	1.43
5782436--5782470	17	2.1	17	88	0	52	65	2	8	22	1.34
5789031--5789087	24	2.4	24	93	0	96	54	15	17	12	1.71
5803042--5803100	24	2.4	25	80	5	66	40	6	8	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5803575--5803606	16	2.0	16	93	0	55	71	3	0	25	1.00
5805680--5805711	5	6.2	5	92	7	55	78	0	0	21	0.76
5809728--5809789	12	5.5	11	71	21	56	61	0	0	38	0.96
5809728--5809789	23	2.8	21	77	20	63	61	0	0	38	0.96
5825024--5825051	2	14.0	2	100	0	56	50	0	0	50	1.00
5826614--5826672	24	2.4	25	80	5	66	40	6	8	44	1.61
5829426--5829450	5	5.0	5	100	0	50	80	0	0	20	0.72
5835031--5835069	2	19.5	2	100	0	78	51	0	0	48	1.00
5836882--5836946	30	2.1	31	85	2	87	55	1	0	43	1.09
5837186--5837224	14	2.8	14	96	0	69	41	0	5	53	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109