genome.fa.s35.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  56  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11067907--11067945	2	19.5	2	89	0	60	48	0	2	48	1.15
11073844--11073901	11	5.1	10	82	17	53	82	1	0	15	0.74
11073855--11073893	6	6.8	6	88	11	64	84	0	0	15	0.62
11073856--11073901	17	2.8	17	90	9	69	82	0	0	17	0.67
11073938--11073978	3	13.7	3	87	10	57	70	0	2	26	0.99
11073944--11073986	21	2.1	20	91	4	68	72	0	4	23	1.04
11074428--11074478	24	2.1	25	82	10	61	58	9	1	29	1.41
11074758--11074805	3	15.7	3	91	4	78	64	2	2	31	1.16
11074816--11074876	18	3.0	20	83	13	72	73	0	4	21	1.01
11074818--11074901	45	2.0	45	88	9	131	71	1	4	22	1.12
11074859--11074932	33	2.5	28	75	22	80	63	2	5	28	1.30
11074880--11074981	54	2.0	50	84	11	134	61	0	5	31	1.26
11074861--11074987	29	4.6	29	70	14	90	62	1	4	30	1.25
11074951--11074994	22	2.0	23	81	4	54	65	2	0	31	1.05
11075170--11075608	45	10.0	43	81	6	445	45	18	13	23	1.84
11075170--11075591	88	4.8	88	86	4	530	44	18	13	23	1.85
11076631--11076673	15	2.7	15	89	10	59	11	11	0	76	1.02
11076936--11077305	185	2.0	185	94	2	654	33	21	11	33	1.89
11078332--11078365	7	5.0	7	92	3	52	17	38	0	44	1.49
11087297--11087455	58	2.7	57	85	10	207	37	12	6	43	1.70
11087289--11087478	58	3.3	57	79	8	199	36	10	7	44	1.68
11087511--11087558	3	16.0	3	81	16	55	68	0	2	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11087511--11087567	24	2.3	24	87	3	78	70	0	3	26	1.03
11087502--11087566	21	3.1	21	79	16	73	67	1	3	27	1.14
11087624--11087667	13	3.4	13	100	0	88	34	25	31	9	1.87
11088344--11088383	20	2.0	20	85	0	53	70	5	2	22	1.19
11088355--11088462	23	5.0	23	72	19	74	62	2	5	29	1.32
11088394--11088573	23	7.0	26	75	19	150	63	1	5	29	1.25
11088406--11088553	21	5.9	24	76	20	119	64	1	5	28	1.23
11088348--11088573	70	3.1	73	79	14	207	63	2	5	28	1.28
11091649--11091674	2	13.0	2	100	0	52	50	0	0	50	1.00
11092285--11092436	75	2.0	75	94	0	268	44	20	7	28	1.78
11098204--11098304	22	4.7	21	72	23	77	46	0	0	52	1.07
11098211--11098304	42	2.2	43	83	11	122	46	0	1	52	1.07
11099982--11100031	18	2.8	18	72	22	50	8	28	26	38	1.84
11103440--11103469	12	2.4	12	94	5	51	70	3	0	26	1.03
11114136--11114213	24	3.2	24	72	3	66	61	0	2	35	1.10
11114194--11114254	24	2.6	23	80	12	61	57	0	1	40	1.08
11114295--11114368	32	2.3	32	83	2	85	52	2	0	44	1.15
11120169--11120214	23	2.0	23	100	0	92	17	13	26	43	1.85
11121450--11121534	37	2.4	36	86	5	118	45	5	3	44	1.45
11122185--11122234	23	2.1	24	82	10	59	48	6	0	46	1.27
11126928--11126964	2	18.5	2	100	0	74	51	0	0	48	1.00
11129417--11129446	2	15.0	2	92	0	51	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11129994--11130026	13	2.5	13	90	9	50	48	3	3	45	1.33
11132086--11132351	135	2.0	135	86	5	371	51	5	11	31	1.60
11143576--11143612	14	2.5	15	86	8	58	62	0	0	37	0.96
11149623--11149652	2	15.0	2	92	0	51	46	3	0	50	1.18
11157374--11157422	26	1.9	25	91	4	80	53	0	0	46	1.00
11157376--11157436	26	2.3	26	83	10	72	52	3	0	44	1.17
11158564--11158618	20	2.5	23	77	19	64	52	0	0	47	1.00
11158565--11158618	22	2.5	21	77	19	58	53	0	0	46	1.00
11158565--11158601	19	2.0	20	84	10	51	48	0	0	51	1.00
11162383--11162413	16	1.9	16	93	0	53	35	0	0	64	0.94
11162521--11162569	22	2.3	22	82	10	66	28	0	2	69	1.00
11163163--11163229	34	2.0	33	82	8	82	41	1	1	55	1.18
11165381--11165431	26	2.1	25	82	13	63	39	0	0	60	0.97
11165391--11165431	20	2.0	22	85	9	59	36	0	0	63	0.95
11165451--11165485	16	2.2	16	90	10	54	45	2	0	51	1.16
11165492--11165522	16	1.9	16	93	0	53	54	0	0	45	0.99
11166437--11166473	18	2.0	20	85	15	53	43	0	0	56	0.99
11166130--11166556	212	2.0	213	90	1	669	50	3	7	37	1.50
11167358--11167416	9	6.6	9	73	13	50	55	0	1	42	1.09
11167358--11167399	17	2.4	18	88	4	59	57	0	2	40	1.12
11167760--11167823	29	2.3	26	79	12	65	65	3	6	25	1.31
11167755--11167794	21	2.0	21	90	5	64	62	5	2	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11168304--11168341	20	1.9	20	89	10	60	52	0	0	47	1.00
11168289--11168356	22	3.1	22	71	12	59	54	0	0	45	0.99
11168282--11168360	24	3.5	22	74	25	67	55	0	0	44	0.99
11168961--11169021	12	5.1	12	73	0	50	68	19	9	1	1.26
11171703--11172437	364	2.0	366	96	1	1366	36	14	16	32	1.89
11177142--11177387	123	2.0	123	93	1	424	33	13	20	32	1.91
11181310--11181361	24	2.2	24	86	3	70	38	1	0	59	1.08
11184703--11184794	48	1.9	48	95	0	166	32	16	14	36	1.88
11185740--11185764	2	12.5	2	100	0	50	48	0	0	52	1.00
11190254--11190281	2	14.0	2	100	0	56	50	0	0	50	1.00
11196024--11196061	2	19.0	2	88	0	58	50	5	0	44	1.24
11196021--11196061	8	5.1	8	93	0	64	48	7	0	43	1.30
11210628--11210707	18	4.3	18	71	6	61	45	3	2	48	1.33
11210905--11210935	16	1.9	16	93	0	53	38	29	6	25	1.81
11212247--11212379	72	1.9	71	81	10	164	45	0	2	51	1.19
11212472--11212499	12	2.3	12	100	0	56	46	7	7	39	1.59
11220735--11220770	2	18.5	2	94	5	65	52	0	0	47	1.00
11220735--11220768	17	2.0	17	100	0	68	52	0	0	47	1.00
11220735--11220771	19	1.9	19	100	0	74	54	0	0	45	1.00
11226442--11226478	18	1.9	19	89	10	58	59	8	0	32	1.27
11226440--11226484	19	2.3	21	77	14	60	53	6	0	40	1.27
11232363--11232392	2	15.0	2	92	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11232528--11232572	19	2.4	19	81	7	56	64	0	0	35	0.94
11237437--11237474	19	2.0	20	89	5	60	26	0	5	68	1.11
11237513--11237552	13	3.1	13	81	0	53	57	0	0	42	0.98
11242860--11242906	24	2.0	23	83	8	58	40	2	10	46	1.50
11243873--11244009	63	2.2	62	81	5	150	43	10	10	36	1.73
11244382--11244424	15	2.9	15	89	0	59	67	0	27	4	1.10
11247100--11247134	18	1.9	18	94	0	61	25	5	28	40	1.78
11253496--11253539	21	2.2	20	91	4	70	36	2	11	50	1.51
11259868--11259910	12	3.2	13	87	9	52	23	2	2	72	1.08
11260380--11260421	18	2.2	19	87	8	59	47	4	2	45	1.36
11261746--11262331	85	6.9	83	74	6	250	40	18	14	27	1.89
11261848--11262314	170	2.7	170	77	4	431	41	18	12	26	1.86
11262546--11262584	19	2.1	19	90	0	60	41	23	12	23	1.88
11262564--11262779	102	2.1	102	81	3	247	33	20	17	28	1.95
11262762--11262807	19	2.4	18	85	7	56	32	19	19	28	1.96
11263066--11263112	19	2.5	19	100	0	94	36	19	25	19	1.95
11264099--11264189	24	3.8	25	75	18	79	60	1	1	37	1.11
11264099--11264159	11	5.2	11	75	24	54	63	1	1	32	1.13
11264748--11264789	23	1.9	21	85	9	57	50	7	0	42	1.30
11269213--11269292	31	2.6	30	77	11	90	43	1	3	51	1.27
11269331--11269371	13	3.3	13	80	6	50	39	0	0	60	0.96
11269408--11269449	20	2.3	17	88	12	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11270033--11270063	14	2.2	14	100	0	62	6	48	6	38	1.55
11270530--11270703	85	2.0	85	93	2	296	41	8	16	33	1.77
11272324--11272349	8	3.2	8	100	0	52	46	0	11	42	1.40
11282607--11282645	3	13.0	3	100	0	78	66	0	0	33	0.92
11287201--11287234	17	2.0	17	94	0	59	41	17	32	8	1.80
11287138--11287237	49	2.1	48	84	1	128	53	15	24	8	1.68
11287218--11287312	34	2.8	34	80	0	109	47	18	26	7	1.75
11291716--11291748	13	2.5	13	100	0	66	15	15	15	54	1.71
11293524--11293556	9	3.7	9	88	12	50	51	0	0	48	1.00
11302758--11302792	6	5.8	6	93	0	52	5	68	8	17	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109