genome.fa.s35.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  87  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17552997--17553048	26	2.0	27	84	3	70	69	0	3	26	1.06
17553873--17554225	180	2.0	180	100	0	706	36	5	10	46	1.62
17555202--17555256	26	2.2	26	80	9	60	34	7	5	52	1.52
17556300--17556356	29	1.9	30	82	3	71	52	1	3	42	1.28
17561496--17561521	11	2.4	11	100	0	52	26	0	0	73	0.84
17562561--17562614	21	2.6	20	80	8	63	24	0	0	75	0.80
17562913--17562956	18	2.5	17	82	17	54	63	0	4	31	1.14
17563135--17563160	11	2.4	11	100	0	52	76	0	0	23	0.78
17563853--17563901	16	2.9	16	82	11	55	83	8	2	6	0.87
17563855--17563905	22	2.3	21	80	9	57	82	7	1	7	0.92
17575119--17575188	33	2.1	33	100	0	140	20	11	28	40	1.87
17575152--17575841	46	14.8	46	84	6	856	28	14	22	34	1.94
17575152--17575829	94	7.3	93	88	2	888	28	14	22	34	1.94
17576051--17576116	21	3.1	20	77	14	62	1	25	1	71	1.04
17577054--17577099	19	2.5	17	83	13	56	21	2	0	76	0.90
17577401--17577444	18	2.5	17	82	17	54	63	0	4	31	1.14
17577698--17578070	189	2.0	189	94	2	660	36	10	14	38	1.81
17579272--17579459	96	2.0	96	88	4	281	29	11	15	44	1.81
17580432--17580473	21	2.0	22	90	4	68	23	4	9	61	1.45
17600288--17600332	22	2.0	22	95	0	81	28	13	15	42	1.85
17604035--17604078	24	1.9	22	86	9	61	34	11	9	45	1.72
17604035--17604088	22	2.3	24	84	6	67	33	12	11	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17609673--17609706	14	2.3	15	90	5	52	55	14	2	26	1.53
17609871--17609919	25	1.9	26	87	4	73	77	2	8	12	1.07
17610863--17610910	14	3.1	15	82	11	53	14	8	6	70	1.31
17611549--17611663	35	3.3	35	85	0	149	33	12	18	35	1.88
17611568--17611670	17	5.9	17	66	8	55	32	12	19	35	1.89
17611672--17611720	16	2.8	18	81	12	66	44	14	8	32	1.74
17611706--17611749	17	2.6	17	85	0	61	34	15	18	31	1.92
17611807--17611838	16	2.0	16	93	0	55	40	6	15	37	1.73
17611694--17611854	52	3.1	50	77	14	150	40	13	14	31	1.84
17611768--17611863	18	5.5	17	70	17	54	39	10	14	35	1.80
17612157--17612272	44	2.6	45	80	5	128	48	13	6	31	1.67
17612191--17612254	21	2.9	22	74	6	58	48	10	1	39	1.48
17613440--17613470	16	1.9	16	93	0	53	0	16	9	74	1.07
17613439--17613470	17	1.9	16	93	6	55	0	15	9	75	1.05
17613773--17613802	1	30.0	1	93	0	51	0	3	0	96	0.21
17617055--17617115	32	1.9	32	93	0	104	68	8	3	19	1.29
17618463--17618490	3	9.3	3	100	0	56	67	0	0	32	0.91
17618496--17618559	20	3.4	18	77	10	65	79	0	7	12	0.92
17618500--17618564	12	5.3	12	73	19	55	80	0	9	10	0.92
17618496--17618566	34	2.0	36	83	10	92	80	0	8	11	0.91
17627232--17627271	19	2.1	19	100	0	80	57	0	27	15	1.38
17630537--17630597	25	2.4	26	89	8	90	40	8	3	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17632605--17632652	23	2.1	23	84	7	62	60	2	0	37	1.09
17633058--17633101	20	2.1	21	87	4	63	52	4	36	6	1.49
17644338--17644368	16	1.9	16	100	0	62	90	0	6	3	0.55
17646413--17647231	413	2.0	413	98	0	1593	26	14	8	49	1.72
17658777--17658816	21	2.0	20	85	14	55	57	5	2	35	1.34
17663011--17663047	19	1.9	19	94	0	65	45	0	8	45	1.32
17663883--17663935	22	2.5	23	80	17	62	41	0	0	58	0.98
17675323--17675373	25	2.0	25	96	0	93	37	15	3	43	1.66
17677757--17677794	20	1.9	20	94	0	67	44	0	7	47	1.32
17677932--17677959	12	2.3	12	100	0	56	46	0	0	53	1.00
17678636--17678681	22	2.1	21	84	11	58	45	0	0	54	0.99
17679224--17679257	5	7.0	5	86	6	52	23	0	17	58	1.38
17683319--17683353	16	2.2	16	89	0	52	51	14	2	31	1.57
17684000--17684050	26	2.0	26	88	0	75	27	3	0	68	1.07
17684982--17685039	22	2.6	24	74	17	63	18	3	0	77	0.91
17691981--17692126	73	2.0	73	86	2	204	27	17	21	34	1.95
17693218--17693270	23	2.2	24	90	3	81	32	41	5	20	1.76
17694281--17694327	21	2.2	21	85	7	60	76	0	21	2	0.89
17700195--17700362	46	3.7	45	77	4	167	28	10	19	41	1.84
17700195--17700386	92	2.1	92	82	1	224	29	9	18	42	1.83
17700230--17700585	46	7.6	45	70	15	134	33	9	15	41	1.80
17700448--17700585	47	3.0	46	82	7	172	34	8	15	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17700469--17700597	47	2.8	46	86	3	179	34	8	15	41	1.78
17701066--17701115	26	2.0	25	84	4	64	6	2	8	84	0.86
17704009--17704076	29	2.3	29	77	18	70	76	2	2	17	1.04
17704260--17704297	10	4.0	10	83	13	53	47	0	0	52	1.00
17713845--17713880	3	11.7	3	94	5	63	63	0	0	36	0.94
17721859--17721910	21	2.3	23	87	6	72	50	0	1	48	1.12
17721859--17721911	23	2.4	22	82	14	65	50	0	1	47	1.12
17726765--17726823	26	2.3	26	80	8	66	30	1	3	64	1.20
17737735--17737797	31	2.0	31	93	0	108	31	4	14	49	1.64
17740622--17740685	24	2.6	24	90	7	94	46	0	1	51	1.10
17740657--17740720	18	3.8	16	70	23	51	43	0	1	54	1.09
17740670--17740753	25	3.2	26	72	13	64	41	0	3	54	1.17
17741018--17741068	17	2.9	17	83	13	68	52	3	0	43	1.19
17741501--17741561	14	4.2	14	77	6	50	50	1	1	45	1.21
17741503--17741585	15	5.5	15	69	13	55	46	2	2	48	1.28
17742003--17742033	16	1.9	16	93	0	53	0	29	0	70	0.87
17744365--17744394	7	4.3	7	91	0	51	90	0	10	0	0.47
17745425--17745500	35	2.2	35	88	4	109	28	19	18	32	1.96
17745779--17745825	21	2.2	21	84	0	67	40	6	12	40	1.69
17745855--17745946	31	3.0	30	79	6	105	41	3	4	51	1.38
17746001--17746065	17	3.6	17	74	15	51	44	3	0	52	1.16
17746048--17746085	17	2.3	17	86	4	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17746054--17746082	14	2.1	14	100	0	58	48	0	0	51	1.00
17746274--17746313	20	2.0	21	90	5	64	57	2	5	35	1.34
17746908--17746950	20	2.1	21	86	4	61	30	4	2	62	1.28
17747097--17747173	28	2.7	29	78	8	86	46	0	3	49	1.20
17751325--17751356	2	16.5	2	93	6	57	50	0	0	50	1.00
17754459--17754487	14	2.1	14	100	0	58	37	6	27	27	1.82
17759666--17759736	27	2.7	25	81	12	79	53	0	19	26	1.45
17759674--17759736	27	2.3	28	83	10	85	52	0	20	26	1.47
17762074--17762113	21	1.9	21	84	0	53	62	2	0	35	1.09
17763724--17763760	19	1.9	19	88	0	56	45	10	16	27	1.80
17763733--17763771	19	2.0	19	90	5	60	41	10	17	30	1.83
17763735--17763778	20	2.3	19	84	4	52	45	4	15	34	1.67
17764530--17764591	21	3.0	20	72	23	65	40	8	0	51	1.31
17764516--17764904	214	1.8	213	83	5	516	34	10	4	51	1.55
17765668--17765734	21	3.2	20	74	17	57	31	2	8	56	1.45
17765293--17765789	216	2.3	215	77	10	476	30	8	7	53	1.60
17765928--17766623	214	3.2	211	78	7	644	31	8	5	54	1.54
17766467--17766514	24	2.0	24	83	0	60	29	4	12	54	1.56
17766607--17766664	21	2.7	22	81	10	75	37	6	5	50	1.52
17769092--17769157	32	2.1	31	83	5	89	77	0	13	9	0.99
17769121--17769165	17	2.8	16	80	6	54	82	0	13	4	0.82
17770326--17770382	22	2.6	22	83	5	62	38	8	17	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17770971--17771230	43	6.0	43	85	2	333	25	13	18	42	1.87
17770941--17771230	86	3.4	86	84	4	338	24	13	20	41	1.88
17771463--17771568	3	31.7	3	72	22	70	31	4	0	63	1.21
17771451--17771621	14	11.8	14	69	19	84	29	5	0	64	1.20
17771451--17771620	75	2.2	74	75	8	164	30	5	0	64	1.20
17772532--17772588	3	17.7	3	92	3	69	29	1	0	68	1.00
17772531--17772597	9	6.6	11	84	10	58	29	1	1	67	1.09
17772617--17772654	11	3.4	11	92	7	67	15	0	2	81	0.80
17772670--17772908	58	4.1	59	88	6	310	44	5	12	36	1.67
17772671--17772988	58	5.7	56	79	12	309	42	6	13	37	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109