genome.fa.s35.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  84  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16912676--16912783	19	5.9	19	72	18	77	44	0	0	53	1.13
16912668--16912784	28	4.3	27	70	18	82	43	0	0	54	1.12
16912666--16912787	53	2.2	53	84	12	151	42	0	0	55	1.11
16912667--16912757	15	6.3	15	73	20	68	42	1	1	54	1.14
16913430--16913463	16	2.1	16	94	0	59	38	5	2	52	1.41
16917358--16917433	37	2.1	37	92	0	125	47	5	0	47	1.24
16922641--16923919	333	3.9	331	86	2	1701	39	12	13	35	1.82
16928579--16928613	14	2.8	12	87	12	52	51	0	14	34	1.42
16933725--16933796	16	4.7	15	74	16	58	43	0	1	55	1.08
16933765--16933815	21	2.5	21	96	3	95	47	0	0	52	1.00
16933765--16933821	21	2.7	21	91	5	80	45	0	0	54	0.99
16937187--16937233	20	2.4	20	82	13	62	46	0	0	53	1.00
16937760--16937793	17	1.9	18	94	5	61	50	2	0	47	1.16
16937768--16937814	22	2.1	23	84	11	62	40	2	4	53	1.32
16937868--16937931	25	2.6	25	82	7	76	64	1	0	34	1.03
16938220--16938292	33	2.2	33	82	5	83	60	2	5	31	1.34
16938278--16938306	15	2.0	15	93	6	51	68	0	0	31	0.89
16942735--16942802	29	2.3	29	100	0	136	45	20	4	29	1.70
16943180--16943218	21	1.9	19	90	10	60	61	2	0	35	1.10
16943931--16944000	34	2.1	34	91	0	113	40	15	7	37	1.75
16945194--16945413	83	2.6	84	75	12	191	42	18	3	35	1.68
16949471--16949706	62	3.8	61	76	10	203	35	12	11	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16958294--16958349	22	2.5	21	83	16	69	41	0	1	57	1.09
16958294--16958349	23	2.5	22	86	13	71	41	0	1	57	1.09
16958313--16958377	29	2.2	30	86	5	96	44	0	0	55	0.99
16960118--16960166	15	3.5	15	81	10	50	46	0	51	2	1.12
16966535--16966571	6	6.2	6	90	0	56	16	0	45	37	1.47
16966914--16966987	18	4.2	18	71	3	78	35	35	4	25	1.75
16966918--16966986	35	1.9	36	91	2	113	36	33	4	26	1.76
16967441--16967484	22	2.0	22	95	0	79	31	11	13	43	1.80
16973074--16973377	151	2.0	152	93	0	520	29	17	22	30	1.97
16974728--16974833	55	1.9	56	88	1	160	33	7	17	40	1.78
16985510--16985556	2	23.5	2	95	0	85	0	46	0	53	1.00
16985898--16985940	21	2.0	21	95	0	77	46	9	13	30	1.75
16991136--16991185	24	2.1	24	96	0	91	34	24	20	22	1.97
16996122--16996159	14	2.6	15	87	4	51	44	0	2	52	1.14
17007847--17007995	56	2.7	56	94	2	264	18	19	20	40	1.91
17009578--17009637	19	2.9	19	80	9	57	66	0	5	28	1.12
17010072--17010112	18	2.2	19	91	4	66	34	0	0	65	0.93
17010128--17010192	33	2.0	33	81	6	78	50	6	0	43	1.27
17012110--17012161	27	2.0	27	81	11	63	63	5	5	25	1.39
17021195--17021334	51	2.7	52	77	3	158	37	17	9	36	1.82
17023754--17023798	23	2.0	23	82	8	56	60	8	22	8	1.55
17025471--17025528	31	1.9	30	82	3	71	41	8	8	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17025705--17025756	23	2.2	24	89	3	79	46	0	0	53	1.00
17025705--17025756	12	4.5	11	80	9	59	46	0	0	53	1.00
17029209--17029302	30	3.1	30	81	4	107	36	9	5	48	1.58
17033551--17033601	3	17.0	3	100	0	102	66	0	0	33	0.92
17035060--17035099	21	1.9	21	89	0	62	77	2	2	17	0.99
17038564--17038650	22	3.9	22	72	7	59	65	1	3	29	1.16
17038576--17038645	21	3.4	20	81	11	79	65	1	4	28	1.20
17038981--17039059	27	2.9	29	83	11	103	49	0	0	50	1.00
17046488--17046528	18	2.2	19	91	4	66	65	2	0	31	1.05
17050711--17050762	24	2.2	24	82	0	59	46	17	26	9	1.79
17050719--17050819	24	4.2	24	81	0	103	44	17	23	13	1.85
17058333--17058384	10	5.2	10	80	13	54	32	0	1	65	1.04
17064948--17065005	30	1.9	30	85	0	80	32	36	20	10	1.87
17065486--17066014	193	2.7	194	94	1	920	36	11	14	37	1.83
17066933--17066989	10	5.8	10	76	12	55	84	10	0	5	0.77
17066940--17066982	12	3.6	12	80	0	50	86	6	0	6	0.72
17066933--17066989	9	5.9	9	78	13	51	84	10	0	5	0.77
17069638--17069708	37	1.9	37	85	0	97	39	18	23	18	1.92
17071426--17071458	16	2.1	16	100	0	66	33	18	6	42	1.75
17073434--17073563	68	1.9	68	88	0	197	49	6	7	36	1.57
17075360--17075489	68	1.9	68	93	0	224	50	6	7	35	1.58
17084619--17085195	61	9.7	60	83	6	710	33	13	6	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17085230--17085302	5	14.4	5	82	13	87	79	0	5	15	0.90
17085858--17085911	26	2.1	26	86	6	74	35	16	5	42	1.72
17086350--17086463	28	4.1	27	71	21	78	63	4	0	32	1.14
17086344--17086467	45	2.9	42	70	21	98	65	4	0	30	1.11
17086660--17086690	13	2.5	12	90	10	53	0	0	9	90	0.46
17086698--17086787	43	2.1	41	85	4	117	34	23	16	25	1.95
17091756--17091796	13	3.1	14	77	22	52	39	17	4	39	1.71
17091756--17091810	27	2.2	26	83	9	69	38	16	3	41	1.66
17092223--17092265	14	3.0	14	90	10	61	60	2	0	37	1.10
17092198--17092321	64	1.9	62	81	14	144	65	3	4	27	1.26
17093430--17093662	128	1.8	129	81	4	292	38	12	17	32	1.87
17094444--17094609	3	59.3	3	65	25	62	33	1	6	57	1.35
17094463--17094608	5	27.2	5	72	20	75	32	2	6	58	1.36
17094447--17094544	16	6.4	16	73	14	75	35	1	6	57	1.31
17095420--17095471	20	2.7	18	76	21	52	21	3	3	71	1.18
17095421--17095477	23	2.7	20	81	13	60	21	3	3	71	1.15
17095440--17095486	23	2.1	23	84	4	60	21	4	4	70	1.22
17095519--17095615	38	2.5	38	74	11	99	62	7	9	20	1.48
17096379--17096458	39	2.1	39	92	0	133	20	12	7	60	1.56
17103058--17103092	2	17.5	2	100	0	70	48	0	0	51	1.00
17109366--17109401	13	2.8	13	95	0	63	41	36	8	13	1.75
17111855--17111888	3	11.7	3	93	6	61	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17112300--17112372	31	2.4	31	88	4	103	23	26	23	27	2.00
17112434--17112478	19	2.4	19	88	0	63	22	31	22	24	1.99
17112769--17112795	10	2.7	10	100	0	54	14	0	7	77	0.97
17112836--17113434	154	3.8	156	92	4	981	29	14	17	38	1.89
17117125--17117165	16	2.6	16	84	7	57	73	0	19	7	1.07
17117092--17117146	20	2.8	20	76	18	53	78	0	16	5	0.93
17118355--17119554	42	29.0	42	87	6	1536	22	17	22	37	1.94
17118355--17119532	167	7.1	165	89	4	1611	22	17	22	37	1.94
17119561--17119652	8	11.8	8	79	11	77	84	9	0	5	0.76
17119562--17119658	18	5.3	17	77	14	95	85	8	0	6	0.74
17119562--17119645	1	84.0	1	75	0	69	86	8	0	4	0.68
17119972--17120002	3	10.7	3	93	6	55	29	0	0	70	0.87
17120417--17120481	32	2.0	32	85	5	87	23	27	21	27	1.99
17120550--17120594	19	2.4	19	88	0	63	22	31	22	24	1.99
17120813--17120855	5	8.6	5	80	10	52	20	41	34	2	1.65
17120875--17120924	24	2.2	22	82	7	55	12	2	6	80	0.98
17120946--17121543	156	3.8	156	94	2	1013	29	14	17	38	1.90
17125087--17125205	34	3.5	34	91	0	202	45	12	6	35	1.69
17125361--17125387	2	13.5	2	100	0	54	48	0	0	51	1.00
17125721--17125751	12	2.6	12	94	0	53	80	3	0	16	0.83
17129307--17129417	58	1.9	58	96	0	204	48	8	6	36	1.58
17129594--17129664	37	1.9	37	85	0	97	39	16	23	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17137292--17137347	18	3.3	18	65	14	55	28	5	7	58	1.46
17137279--17137347	33	2.1	33	94	0	120	28	5	5	59	1.44
17137318--17137376	23	2.4	25	81	18	72	28	5	6	59	1.45
17141144--17141177	17	2.0	17	100	0	68	47	5	5	41	1.52
17141598--17141642	4	11.2	4	95	0	63	42	0	6	51	1.28
17145965--17146131	59	2.8	59	78	8	176	41	14	14	28	1.86
17146752--17146787	13	2.8	13	95	0	63	25	27	19	27	1.99
17147196--17147351	5	29.6	5	71	22	90	35	1	4	57	1.30
17147198--17147352	3	54.3	3	67	27	72	35	1	4	58	1.30
17147196--17147331	18	7.8	18	70	17	92	36	1	4	57	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109