genome.fa.s35.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  95  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19099665--19099703	19	2.1	19	100	0	78	20	23	41	15	1.90
19106273--19106319	20	2.3	21	92	3	78	34	0	8	57	1.29
19108618--19108650	17	1.9	17	93	0	57	42	6	0	51	1.26
19108986--19109034	26	1.9	26	84	12	66	32	6	0	61	1.21
19114280--19114317	19	2.0	20	84	5	51	10	2	10	76	1.12
19114287--19114358	31	2.2	34	82	9	87	11	4	11	73	1.22
19119965--19119994	10	3.1	10	95	4	53	36	0	0	63	0.95
19122150--19122531	190	2.0	190	97	1	730	40	7	4	48	1.50
19126106--19126139	2	17.0	2	87	0	50	47	2	2	47	1.32
19127273--19127305	10	3.2	10	95	4	57	42	0	0	57	0.98
19127263--19127344	27	2.9	29	72	15	73	45	3	0	51	1.19
19127301--19127352	16	3.1	16	76	10	50	48	1	0	50	1.12
19128786--19128826	19	2.2	19	90	0	64	63	12	0	24	1.28
19130330--19130413	37	2.3	37	85	8	109	21	9	46	22	1.80
19131128--19131211	22	3.8	22	79	4	98	36	9	17	35	1.83
19131681--19131873	102	1.9	103	83	3	255	39	6	10	43	1.65
19131965--19132013	20	2.3	20	83	13	55	46	10	4	38	1.57
19131970--19132013	20	2.2	20	88	12	63	45	9	4	40	1.56
19132134--19132200	13	5.2	13	74	17	52	76	1	1	20	0.95
19132149--19132202	21	2.5	22	85	11	76	77	1	1	18	0.95
19132197--19132238	13	3.4	12	81	12	50	76	14	0	9	1.02
19133104--19133147	20	2.2	20	84	8	54	11	15	2	70	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19133849--19133911	16	3.8	16	81	10	65	6	14	4	74	1.18
19133955--19133998	22	2.0	23	86	4	63	72	9	0	18	1.10
19134337--19134379	22	2.0	22	85	0	59	30	20	16	32	1.95
19134583--19134661	40	2.0	40	87	0	113	37	8	15	37	1.78
19134598--19134772	40	4.3	40	71	9	115	38	11	14	35	1.83
19134814--19134864	23	2.3	21	83	12	59	31	15	5	47	1.70
19136764--19136848	23	3.6	23	76	9	91	7	14	2	76	1.09
19136720--19136807	33	2.4	36	84	15	112	3	18	1	77	0.97
19138565--19138640	40	1.9	40	88	0	116	43	10	19	26	1.83
19141112--19141159	20	2.4	20	100	0	96	35	18	22	22	1.96
19141533--19141756	111	2.0	111	96	0	412	30	18	8	42	1.79
19143825--19143945	64	1.9	64	93	3	208	47	10	8	33	1.68
19144399--19144431	3	11.0	3	100	0	66	66	0	0	33	0.92
19145598--19145825	96	2.4	96	97	0	431	17	8	49	23	1.75
19155020--19155738	355	2.0	353	91	3	1174	48	14	9	27	1.75
19155761--19155789	15	1.9	15	100	0	58	55	17	6	20	1.65
19155907--19156041	60	2.2	60	90	4	207	24	14	48	12	1.78
19156117--19156204	6	14.7	6	85	0	50	9	5	53	31	1.56
19156117--19156187	12	5.9	12	81	0	61	8	7	53	30	1.58
19156123--19156204	18	4.6	18	76	0	65	8	6	53	31	1.56
19156113--19156204	42	2.2	42	88	0	130	8	5	54	31	1.54
19156153--19156213	18	3.4	17	79	4	59	3	8	54	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19156772--19156832	24	2.6	24	74	23	58	50	1	1	45	1.21
19156777--19156834	23	2.5	23	76	23	59	50	1	1	46	1.22
19156851--19156889	19	2.1	19	85	0	51	41	7	7	43	1.62
19157290--19157359	29	2.4	29	76	11	72	57	1	1	40	1.17
19157388--19157424	14	2.8	13	88	8	56	54	2	0	43	1.14
19157516--19157571	23	2.5	22	82	8	60	41	3	8	46	1.52
19157846--19157915	30	2.3	30	77	0	77	50	7	8	34	1.61
19158482--19158515	18	1.9	18	88	5	52	38	0	8	52	1.33
19158557--19158611	25	2.2	25	100	0	110	43	0	10	45	1.39
19158650--19158688	14	2.9	13	88	11	53	25	0	0	74	0.82
19158629--19158692	22	2.9	22	79	9	60	32	0	0	67	0.91
19159786--19159927	70	2.0	70	90	0	221	40	4	7	46	1.54
19159905--19159945	17	2.4	18	80	12	50	36	4	2	56	1.34
19160675--19160741	6	11.8	6	80	10	54	31	0	1	67	1.00
19160675--19160739	11	6.0	11	75	10	55	30	0	1	67	1.00
19160801--19160860	31	1.9	32	86	3	86	41	0	0	58	0.98
19160809--19160866	23	2.5	24	81	13	68	43	0	0	56	0.99
19160901--19160931	15	2.0	16	93	6	55	54	0	0	45	0.99
19161563--19161613	24	2.2	23	86	10	68	49	1	0	49	1.12
19161575--19161658	32	2.6	32	81	9	91	47	0	0	52	1.00
19161648--19161698	21	2.5	20	81	9	57	29	5	1	62	1.29
19164672--19164716	22	2.0	22	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19164666--19164717	22	2.5	20	85	14	79	48	0	0	51	1.00
19169381--19169432	7	7.6	7	79	10	54	82	1	1	13	0.84
19169378--19169434	13	4.3	13	80	10	71	80	1	1	15	0.87
19169380--19169433	28	2.0	27	88	3	81	79	1	1	16	0.91
19170180--19170205	9	2.9	9	100	0	52	46	0	0	53	1.00
19170358--19170397	19	2.0	20	95	4	73	45	0	0	55	0.99
19170357--19170401	20	2.2	21	88	11	76	44	0	0	55	0.99
19170358--19170423	20	3.0	22	80	12	66	45	0	0	54	0.99
19170419--19170456	13	3.0	13	80	3	51	55	0	0	44	0.99
19170404--19170443	18	2.2	18	86	8	55	50	0	0	50	1.00
19170419--19170490	15	5.1	14	78	6	67	56	1	0	41	1.07
19170419--19170489	29	2.6	27	82	10	81	56	1	0	42	1.08
19170818--19170880	21	3.2	19	80	12	74	77	3	6	12	1.07
19170827--19170879	19	2.8	17	81	18	61	79	3	5	11	1.03
19170826--19170882	20	2.8	20	78	0	69	80	3	5	10	0.98
19177241--19177293	24	2.2	24	93	6	90	43	0	11	45	1.40
19177331--19177364	15	2.2	16	89	5	52	17	0	0	82	0.67
19178460--19178601	70	2.0	70	90	0	221	40	4	7	47	1.52
19179348--19179416	6	11.8	6	81	7	54	31	0	0	68	0.90
19179358--19179425	36	1.9	35	87	3	100	36	0	0	63	0.95
19179477--19179536	31	1.9	32	86	3	86	41	0	0	58	0.98
19179485--19179542	23	2.5	24	81	13	68	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19179577--19179607	15	2.0	16	93	6	55	54	0	0	45	0.99
19179609--19179642	14	2.3	15	90	5	52	52	0	0	47	1.00
19183347--19183391	22	2.0	22	100	0	90	48	0	0	51	1.00
19183341--19183392	22	2.5	20	85	14	79	48	0	0	51	1.00
19187432--19187495	17	3.7	17	69	17	51	79	3	14	3	0.97
19188055--19188101	7	6.7	7	78	9	51	80	2	2	14	0.89
19188052--19188104	13	4.0	13	81	11	63	81	1	1	15	0.87
19189021--19189092	30	2.4	32	78	19	84	50	0	0	50	1.00
19189004--19189068	23	2.9	24	75	22	70	46	0	0	53	1.00
19189025--19189092	28	2.3	30	80	12	79	48	0	0	51	1.00
19189064--19189100	12	3.0	13	80	11	51	56	0	0	43	0.99
19189049--19189087	17	2.2	18	86	4	53	51	0	0	48	1.00
19189064--19189134	15	5.1	14	78	10	67	57	1	0	40	1.07
19189472--19189523	20	2.8	18	80	13	61	78	3	5	11	1.05
19190602--19190634	17	2.0	17	88	5	50	75	3	9	12	1.14
19195982--19196066	31	2.5	35	75	17	81	30	4	2	62	1.28
19196044--19196085	14	3.0	14	83	13	59	19	0	2	78	0.86
19196984--19197057	33	2.2	33	79	9	80	16	6	1	75	1.08
19197022--19197070	20	2.4	21	86	10	66	12	6	2	79	0.99
19196994--19197070	17	4.3	16	73	20	64	12	7	1	77	1.03
19196994--19197097	55	2.0	51	85	11	138	13	9	1	75	1.14
19197052--19197093	22	1.9	22	85	9	59	14	11	2	71	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19197181--19197240	28	2.1	28	96	0	111	41	8	15	35	1.77
19197123--19197298	85	2.1	86	95	2	320	44	6	12	35	1.69
19197209--19197413	58	3.4	57	84	8	241	45	6	12	35	1.67
19200254--19200279	10	2.6	10	100	0	52	92	0	7	0	0.39
19200622--19200681	17	3.5	16	84	9	66	81	0	15	3	0.81
19200622--19200681	20	3.0	20	78	9	59	81	0	15	3	0.81
19200642--19200708	8	9.1	7	81	12	57	80	0	14	4	0.86
19200642--19200708	24	2.7	25	82	14	86	80	0	14	4	0.86
19200622--19200706	32	2.7	32	77	15	79	80	0	14	5	0.90
19200676--19200706	9	3.6	9	95	4	55	80	0	9	9	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109