genome.fa.s35.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  44  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7424162--7424223	31	2.0	32	87	3	90	37	1	0	61	1.06
7424552--7424600	17	2.9	16	76	11	53	53	8	0	38	1.31
7426802--7426913	3	35.7	3	72	21	70	26	3	0	68	1.11
7426832--7426927	27	3.6	27	83	10	101	22	5	2	69	1.19
7426871--7426909	19	2.1	19	85	0	51	23	5	2	69	1.21
7426800--7426919	17	7.3	16	70	18	79	25	3	0	70	1.09
7426800--7426925	29	4.4	27	71	22	96	25	3	1	69	1.12
7427786--7427831	6	8.0	6	80	9	51	15	2	2	80	0.91
7433168--7433958	407	1.9	407	88	0	1195	36	14	20	28	1.92
7439045--7439092	9	5.8	8	86	11	62	87	0	4	8	0.66
7439043--7439092	26	2.0	25	92	4	82	84	0	6	10	0.79
7440082--7440280	41	4.9	41	84	6	242	28	14	20	37	1.91
7440082--7440280	82	2.4	82	82	8	269	28	14	20	37	1.91
7440527--7440649	53	2.3	52	83	4	138	26	2	2	68	1.15
7440526--7440649	25	4.7	27	77	10	121	26	2	2	68	1.14
7440562--7440652	19	4.7	18	72	8	65	24	2	1	72	1.02
7440929--7440991	24	2.7	23	69	16	58	26	4	9	58	1.49
7441482--7441507	3	8.7	3	100	0	52	30	0	0	69	0.89
7441534--7441579	22	2.1	22	88	8	67	21	0	2	76	0.90
7441537--7441585	22	2.3	21	80	13	55	18	2	2	77	0.96
7441655--7441692	18	2.0	20	85	10	53	65	5	2	26	1.27
7441676--7441810	60	2.3	55	75	13	135	49	4	11	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7441611--7441919	136	2.3	133	82	9	371	48	4	12	34	1.62
7441807--7441919	58	1.9	58	85	3	154	48	4	13	33	1.62
7442549--7442901	181	1.9	182	95	0	645	28	13	12	45	1.79
7453152--7453195	10	4.1	10	82	11	52	4	13	0	81	0.83
7458999--7459123	61	2.0	61	96	0	232	29	21	12	36	1.90
7466973--7467026	28	2.0	27	85	3	72	35	1	0	62	1.06
7466996--7467076	21	3.8	21	73	19	78	44	2	1	51	1.22
7467093--7467118	12	2.2	12	100	0	52	30	0	0	69	0.89
7467333--7467395	4	15.2	4	78	18	51	53	1	0	44	1.10
7467360--7467393	5	7.2	5	87	12	54	58	0	0	41	0.98
7467334--7467403	9	7.2	9	81	10	68	54	1	1	42	1.18
7473282--7473311	12	2.5	12	88	0	51	0	23	33	43	1.54
7478331--7478383	5	9.8	5	82	10	52	58	22	18	0	1.39
7481083--7481127	16	2.9	15	86	6	54	26	0	2	71	0.98
7481248--7481272	13	1.9	13	100	0	50	48	12	0	40	1.40
7487839--7487893	21	2.6	20	77	11	56	50	0	1	47	1.11
7487988--7488017	14	2.1	15	93	6	53	13	3	0	83	0.77
7489772--7489798	1	27.0	1	100	0	54	0	0	0	100	0.00
7490636--7490674	20	2.0	20	85	10	53	35	0	0	64	0.94
7495913--7495956	11	3.8	11	77	11	52	70	0	2	27	0.99
7495910--7495986	13	5.9	13	70	13	52	66	0	2	31	1.05
7497169--7497221	19	2.9	19	78	18	60	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7497242--7497302	32	2.0	30	81	12	70	47	11	6	34	1.66
7497298--7497355	22	2.6	22	91	0	89	44	3	1	50	1.29
7497596--7497646	19	2.7	19	84	9	68	60	0	0	39	0.97
7502801--7502829	13	2.2	13	100	0	58	31	6	31	31	1.84
7509094--7509122	12	2.3	13	94	5	51	0	6	3	89	0.57
7514017--7514045	14	2.0	15	93	6	51	65	0	0	34	0.93
7527348--7527396	25	2.0	25	84	8	64	28	4	10	57	1.50
7534950--7534981	3	10.7	3	100	0	64	65	0	0	34	0.93
7537419--7537454	19	1.9	18	88	5	54	55	0	0	44	0.99
7537417--7537464	19	2.5	19	74	12	53	62	0	0	37	0.95
7539142--7539190	11	4.4	11	80	12	55	36	6	0	57	1.24
7539142--7539190	16	2.9	16	85	11	55	36	6	0	57	1.24
7540172--7540219	25	2.0	25	88	12	73	41	0	2	56	1.11
7541232--7541288	27	2.1	27	83	6	71	47	1	1	49	1.22
7545002--7545027	4	6.5	4	100	0	52	50	23	0	26	1.50
7564423--7564476	22	2.4	23	90	6	85	48	0	0	51	1.00
7566690--7566730	17	2.7	15	85	14	50	46	7	12	34	1.69
7566690--7566725	17	2.1	17	100	0	72	47	5	11	36	1.63
7572969--7573010	22	1.9	22	95	0	75	42	0	4	52	1.22
7580863--7580893	2	15.5	2	100	0	62	51	0	0	48	1.00
7595747--7595812	18	3.4	18	70	22	62	51	7	9	31	1.62
7595743--7595821	40	2.0	40	100	0	158	50	7	10	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7613390--7613468	41	1.9	41	89	0	122	31	15	17	35	1.91
7617023--7617077	23	2.3	24	81	3	67	58	0	0	41	0.98
7617021--7617066	12	4.0	12	76	18	53	60	0	0	39	0.97
7617127--7617185	8	7.2	8	74	16	50	52	1	1	44	1.21
7617260--7617302	21	2.1	20	87	12	61	60	0	0	39	0.97
7621210--7621247	18	2.1	18	90	0	58	0	34	0	65	0.93
7621210--7621247	10	4.0	10	83	13	53	0	34	0	65	0.93
7631164--7631254	47	1.9	47	84	6	121	46	13	4	36	1.63
7635576--7635600	2	12.5	2	100	0	50	48	0	0	52	1.00
7640813--7640842	11	2.7	11	94	0	51	26	0	10	63	1.26
7644793--7644855	32	2.0	32	93	0	108	33	22	25	19	1.97
7644841--7644978	64	2.3	62	80	8	149	34	18	23	22	1.96
7653534--7653575	12	3.5	12	84	9	59	71	9	0	19	1.13
7654070--7654115	20	2.4	19	79	13	58	50	10	10	28	1.71
7654370--7654401	9	3.7	9	91	8	57	15	0	0	84	0.63
7654361--7654401	17	2.4	17	92	8	66	17	0	0	82	0.66
7654950--7654997	25	1.9	25	83	8	62	33	4	4	58	1.36
7655022--7655087	32	2.1	31	91	2	105	69	1	1	27	1.06
7655022--7655099	32	2.4	32	87	6	104	66	1	1	30	1.07
7659591--7659628	18	2.1	18	85	9	51	39	0	0	60	0.97
7664389--7664418	13	2.3	13	94	0	51	30	10	26	33	1.89
7664532--7664573	5	8.4	5	89	10	68	0	0	80	19	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7670253--7670282	2	15.0	2	100	0	60	50	0	0	50	1.00
7671550--7671663	40	2.8	40	79	0	129	38	11	3	46	1.57
7673737--7673777	22	1.9	22	90	5	66	70	0	7	21	1.11
7674162--7674208	20	2.3	20	85	3	58	61	19	2	17	1.44
7674345--7674455	7	17.3	6	73	16	66	20	3	1	73	1.07
7674363--7674411	18	2.7	18	81	15	57	24	4	0	71	1.03
7674381--7674509	3	42.3	3	72	18	72	27	3	0	68	1.10
7674383--7674456	27	2.6	28	77	14	80	22	2	1	72	1.04
7674345--7674508	43	3.6	43	74	17	102	25	3	1	69	1.12
7674342--7674472	64	2.0	64	80	11	144	23	3	1	70	1.11
7674346--7674476	70	1.9	70	81	12	162	24	3	1	70	1.13
7674445--7674582	71	1.9	72	80	12	160	31	2	2	63	1.21
7674517--7674579	22	3.0	21	82	13	67	31	3	3	61	1.27
7674530--7674618	22	4.1	21	73	5	70	25	3	5	65	1.31
7675157--7675195	19	2.1	19	90	0	60	56	0	43	0	0.99
7675152--7675194	15	2.9	15	82	0	50	60	0	39	0	0.97
7675487--7675521	11	3.0	11	91	8	52	28	0	0	71	0.86
7675550--7675625	28	2.7	27	82	15	100	11	7	3	76	1.14
7675544--7675628	17	5.4	17	69	24	62	12	7	3	76	1.12
7675544--7675636	11	8.4	10	70	19	53	12	6	3	77	1.08
7675589--7675637	17	2.8	17	78	9	55	12	4	4	79	1.01
7675557--7675642	28	3.1	27	83	6	93	11	6	3	77	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7675584--7675643	17	3.5	17	71	22	54	11	6	3	78	1.06
7675643--7676046	59	6.9	59	81	5	437	46	7	11	33	1.70
7675656--7676048	116	3.4	115	83	7	474	45	7	12	34	1.71
7691858--7691896	17	2.3	16	83	12	51	89	0	5	5	0.58
7691859--7691893	18	1.9	18	88	0	52	88	0	5	5	0.63
7692889--7693231	86	4.0	86	87	2	472	24	14	18	41	1.88
7692889--7693231	44	7.9	44	83	3	392	24	14	18	41	1.88
7693408--7693532	13	9.1	13	73	19	78	18	4	0	76	0.98
7693415--7693535	11	10.2	11	73	19	77	19	3	0	76	0.98
7693414--7693542	44	3.0	42	75	16	111	20	3	0	75	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109