genome.fa.s35.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  89  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17982262--17982342	26	3.1	26	75	12	76	58	2	1	38	1.20
17982396--17982485	19	4.9	18	73	13	60	50	7	1	41	1.39
17982449--17982491	19	2.3	19	84	8	52	51	6	0	41	1.29
17982789--17982857	36	1.9	35	82	8	86	31	2	2	62	1.25
17982834--17982901	20	3.4	19	78	11	73	23	1	8	66	1.28
17983065--17983182	6	18.5	6	71	15	51	21	3	2	72	1.11
17983096--17983234	3	44.7	3	73	16	63	26	4	1	67	1.17
17983278--17983330	22	2.5	20	87	6	70	24	5	7	62	1.44
17983278--17983317	11	3.5	12	75	25	50	27	5	5	62	1.37
17983500--17983566	6	11.5	6	72	23	54	19	2	0	77	0.89
17983509--17983548	14	2.8	14	84	3	53	15	5	0	80	0.88
17983500--17983627	29	4.4	28	72	14	82	20	2	2	75	1.03
17983475--17983626	82	1.9	78	92	8	252	22	1	3	71	1.12
17983500--17983627	16	7.7	17	70	17	83	20	2	2	75	1.03
17983653--17984145	62	8.1	59	73	10	320	44	6	11	37	1.67
17983636--17984114	122	4.0	120	77	10	406	45	6	11	36	1.66
17983673--17984142	121	3.8	122	82	7	553	44	6	12	36	1.68
17988299--17988338	19	2.1	19	100	0	80	50	5	15	30	1.65
17992485--17992536	8	6.8	8	93	4	81	82	0	5	11	0.82
17992485--17992542	8	7.9	7	90	7	73	84	0	5	10	0.77
17992485--17992542	30	2.0	29	93	3	98	84	0	5	10	0.77
17992484--17992537	15	3.4	16	87	12	85	83	0	5	11	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17992493--17992547	15	3.7	14	83	13	58	81	0	7	10	0.86
17993537--17993664	42	3.1	42	82	5	127	25	17	21	35	1.95
17993838--17993923	9	10.4	8	70	19	52	17	3	1	77	0.96
17993871--17994003	3	43.7	3	72	15	53	26	4	0	68	1.14
17993839--17993951	19	6.5	17	71	19	74	19	3	1	75	1.04
17993883--17993925	22	2.0	22	86	9	61	20	2	0	76	0.89
17993869--17993951	40	2.0	42	84	9	109	20	2	1	75	0.98
17993871--17993947	33	2.3	32	77	16	86	20	2	1	75	1.00
17993881--17993954	34	2.2	34	81	13	82	21	2	1	74	1.02
17994408--17994478	14	4.6	16	77	10	60	19	2	1	76	0.99
17994416--17994521	14	7.3	13	69	23	61	20	1	3	73	1.08
17994547--17994669	61	2.1	59	83	4	149	45	5	13	35	1.67
17996262--17996306	14	3.3	14	81	6	56	26	13	0	60	1.34
17997581--17997625	18	2.4	18	88	3	72	35	4	20	40	1.72
17997945--17998001	30	2.0	29	82	6	71	54	7	5	33	1.50
17997937--17998023	46	1.9	44	88	9	131	54	6	5	33	1.51
18001652--18001763	52	2.2	52	85	0	143	26	11	16	44	1.82
18001764--18001852	20	4.4	21	78	5	76	33	13	13	39	1.84
18001764--18001856	41	2.3	40	80	7	107	34	12	13	38	1.84
18001781--18001852	20	3.5	21	79	5	85	33	15	13	37	1.87
18002751--18002827	23	3.4	23	80	8	79	29	5	0	64	1.15
18002768--18002826	22	2.7	22	89	5	84	33	6	0	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18002752--18002827	22	3.4	22	77	12	75	30	5	0	64	1.15
18003695--18003749	6	9.0	6	75	16	51	16	3	0	80	0.86
18003695--18003749	12	4.5	12	80	11	58	16	3	0	80	0.86
18003701--18003741	17	2.4	17	88	11	66	17	2	0	80	0.82
18003767--18004042	58	4.8	58	93	1	446	42	6	14	37	1.70
18007243--18007296	22	2.5	20	75	16	54	44	7	7	40	1.60
18007439--18007501	29	2.1	30	82	2	74	38	3	6	52	1.43
18007450--18007514	30	2.2	29	83	5	87	40	1	3	55	1.25
18014839--18014887	23	2.2	22	85	3	62	36	0	4	59	1.17
18015433--18015469	13	2.8	13	91	0	56	72	2	0	24	0.97
18016947--18017002	7	7.7	7	79	13	60	80	7	0	12	0.90
18016954--18017004	15	3.3	15	97	2	93	82	5	0	11	0.83
18016954--18017006	16	3.4	16	94	5	99	81	5	0	13	0.86
18016945--18016988	23	1.9	23	95	0	79	81	6	0	11	0.86
18020655--18020698	17	2.5	18	85	10	56	81	0	11	6	0.86
18021587--18021657	33	2.3	31	80	9	83	33	14	15	36	1.87
18022013--18022317	42	7.0	42	76	9	223	24	11	22	40	1.87
18022014--18022174	86	1.9	86	86	0	232	24	11	22	40	1.87
18022082--18022255	95	1.8	95	90	2	278	24	11	22	41	1.87
18022047--18022311	137	1.9	136	84	4	354	25	10	22	41	1.86
18022204--18022378	82	2.1	84	84	4	221	25	9	23	41	1.84
18022413--18022584	42	4.3	42	72	14	157	23	15	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18022455--18022861	75	5.4	75	84	3	451	23	15	22	38	1.93
18022623--18022732	33	2.8	42	66	23	103	24	16	20	38	1.93
18023078--18023684	48	12.8	49	77	8	307	29	11	19	39	1.87
18023082--18023686	96	6.4	95	76	8	459	28	11	20	40	1.86
18023069--18023686	145	4.3	143	78	9	575	29	11	19	39	1.86
18023405--18023476	37	1.9	38	94	5	130	27	11	13	47	1.77
18023164--18023685	277	1.9	277	84	4	703	29	10	19	40	1.85
18023442--18023686	97	2.5	97	77	8	257	28	9	19	42	1.82
18023833--18023857	11	2.3	11	100	0	50	0	8	0	92	0.40
18027318--18027386	36	1.9	36	93	0	120	28	20	11	39	1.87
18029976--18030031	21	2.6	22	72	5	53	33	10	0	55	1.35
18031355--18031397	23	1.9	22	85	4	59	62	0	4	32	1.15
18038033--18038074	19	2.3	18	88	8	59	54	0	2	42	1.13
18038570--18038611	11	3.8	11	93	0	75	16	0	30	52	1.44
18038636--18038792	52	3.0	52	88	1	208	39	9	24	26	1.86
18039662--18039703	11	3.8	11	93	0	75	16	0	30	52	1.44
18039728--18039884	52	3.0	52	88	1	208	39	8	25	26	1.84
18040685--18040735	8	6.1	8	77	22	52	47	11	1	39	1.52
18044446--18044492	7	6.6	7	79	13	51	17	0	2	80	0.80
18044446--18044492	17	2.6	18	78	18	53	17	0	2	80	0.80
18044745--18044809	6	10.8	6	88	6	96	84	0	12	3	0.73
18045180--18045208	10	2.9	10	100	0	58	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18047234--18047289	22	2.5	22	86	11	87	78	0	3	17	0.89
18047236--18047293	7	8.0	7	75	24	50	79	0	3	17	0.87
18048741--18048767	2	13.5	2	100	0	54	48	0	0	51	1.00
18048812--18048953	3	48.7	3	77	18	122	30	2	2	65	1.16
18048812--18048926	46	2.5	45	94	5	196	33	1	2	62	1.19
18048917--18048960	11	4.0	11	85	8	54	18	6	0	75	1.02
18049297--18049336	20	2.0	20	95	0	71	12	5	32	50	1.62
18049806--18049857	23	2.2	24	75	25	58	21	1	1	75	1.00
18053856--18053895	11	3.6	11	80	12	55	35	5	0	60	1.19
18053853--18053900	22	2.2	22	100	0	96	35	4	0	60	1.16
18053859--18053906	22	2.2	22	92	0	78	41	4	0	54	1.20
18058114--18058260	33	4.5	33	77	6	120	25	9	21	43	1.82
18058670--18058742	33	2.2	34	85	7	96	28	9	19	42	1.82
18060163--18060203	21	2.0	21	90	0	64	19	2	4	73	1.13
18060146--18060206	27	2.3	26	83	11	70	19	3	4	72	1.18
18060159--18060232	13	5.5	13	78	10	69	22	2	5	68	1.23
18062348--18062385	14	2.9	14	84	11	53	18	5	0	76	0.97
18062482--18062567	17	5.1	17	74	16	65	72	0	4	23	1.04
18062485--18062572	22	3.8	21	72	20	61	71	0	4	23	1.04
18062533--18062569	18	2.1	17	90	5	56	75	0	2	21	0.92
18062482--18062572	23	3.8	24	70	23	68	71	0	4	24	1.04
18062995--18063021	14	1.9	14	100	0	54	59	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18062989--18063052	20	3.0	21	88	9	85	59	7	0	32	1.26
18062999--18063094	33	3.1	30	81	12	99	58	8	1	32	1.35
18062989--18063055	3	21.7	3	80	17	75	59	7	0	32	1.25
18067093--18067143	8	6.1	8	77	22	52	39	1	11	47	1.52
18067942--18068098	52	3.0	52	87	1	226	26	24	8	40	1.83
18068123--18068164	11	3.8	11	93	0	75	52	30	0	16	1.44
18069034--18069190	52	3.0	52	88	1	217	26	24	9	39	1.86
18069215--18069256	11	3.8	11	93	0	75	52	30	0	16	1.44
18069747--18069782	11	3.2	11	96	4	63	44	2	0	52	1.15
18069761--18069797	18	2.2	16	90	9	56	37	5	0	56	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109