genome.fa.s35.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  108  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22515030--22515139	22	4.9	22	70	10	62	40	8	5	46	1.57
22515104--22515216	22	5.2	22	71	12	72	35	5	13	46	1.66
22515277--22515391	22	5.4	22	69	6	74	35	6	6	50	1.56
22515542--22515639	43	2.3	43	76	1	97	37	8	7	46	1.61
22515571--22515674	22	4.8	22	74	2	75	36	10	4	48	1.59
22515698--22515969	22	12.4	22	70	6	97	36	6	4	51	1.49
22515710--22515895	66	2.8	65	76	4	160	37	6	3	52	1.45
22515921--22515982	22	2.8	22	85	0	88	38	9	1	50	1.45
22516358--22516386	13	2.1	14	93	6	51	20	0	0	79	0.74
22516399--22516457	28	2.2	28	84	6	77	33	1	0	64	1.04
22516363--22516485	27	4.5	28	74	15	98	30	4	0	65	1.11
22516426--22516577	23	7.1	21	73	16	109	32	3	0	63	1.16
22516369--22516569	3	63.0	3	70	19	74	31	4	0	63	1.18
22516359--22516537	98	1.9	89	82	12	216	31	3	0	64	1.16
22516461--22516638	62	2.9	62	90	7	269	32	4	1	61	1.26
22517499--22517566	6	11.2	6	77	16	61	16	5	0	77	0.95
22517499--22517565	10	6.1	11	76	10	66	16	5	0	77	0.95
22517508--22517566	18	3.6	18	84	10	74	15	5	0	79	0.89
22517586--22517749	58	2.8	58	84	2	213	42	4	12	40	1.65
22528969--22528993	3	8.3	3	100	0	50	68	0	32	0	0.90
22530385--22530409	13	1.9	13	100	0	50	60	0	0	40	0.97
22539002--22539035	2	17.5	2	93	6	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22546107--22546184	39	2.0	39	82	7	95	60	1	1	37	1.13
22546213--22546263	26	2.0	25	85	11	68	52	0	0	47	1.00
22546213--22546263	25	2.0	26	85	11	70	52	0	0	47	1.00
22546666--22546722	8	7.1	8	84	7	80	61	0	22	15	1.34
22546666--22546730	33	2.0	33	87	6	96	63	0	21	15	1.31
22552401--22552464	33	1.9	32	81	12	76	57	0	1	40	1.08
22575736--22575836	52	1.9	52	91	0	166	24	11	23	39	1.89
22580839--22581044	103	2.0	103	95	0	367	35	14	19	30	1.92
22588565--22588605	12	3.5	11	83	9	55	56	0	2	41	1.13
22588574--22588606	17	1.9	17	88	11	50	57	0	3	39	1.14
22596826--22596850	2	12.5	2	100	0	50	52	0	0	48	1.00
22597532--22597560	2	14.5	2	100	0	58	48	0	0	51	1.00
22597694--22597766	12	6.2	12	74	15	53	42	13	0	43	1.44
22598198--22598241	23	1.9	23	85	0	61	22	0	2	75	0.92
22598423--22598482	12	5.2	12	80	11	63	41	0	0	58	0.98
22598434--22598471	8	4.9	8	83	6	51	36	0	0	63	0.95
22599988--22600037	26	2.0	24	84	7	64	48	4	4	44	1.40
22600124--22600166	20	2.0	22	86	8	63	48	2	0	48	1.14
22609833--22609867	2	17.5	2	100	0	70	0	51	0	48	1.00
22614394--22614450	28	2.0	28	93	0	96	35	22	7	35	1.82
22617500--22617551	2	26.0	2	100	0	104	50	0	50	0	1.00
22618935--22618968	15	2.2	16	89	5	52	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22624531--22624572	21	2.0	22	90	4	68	16	2	0	80	0.81
22624531--22624600	27	2.6	27	78	17	74	15	2	4	77	1.05
22627431--22627481	15	3.5	15	83	5	59	64	1	31	1	1.15
22629922--22629969	23	2.1	23	84	7	62	33	16	10	39	1.83
22634162--22634209	15	3.4	14	78	21	55	60	2	0	37	1.09
22638035--22638064	14	2.1	14	93	0	51	13	20	36	30	1.90
22640074--22640459	214	1.8	214	99	0	763	31	18	13	36	1.90
22642679--22642720	22	1.9	22	90	0	66	45	9	11	33	1.73
22646368--22646426	25	2.4	25	86	5	77	42	18	23	15	1.88
22646637--22646678	22	1.9	22	90	0	66	45	9	11	33	1.73
22647215--22647255	2	21.0	2	85	5	57	46	0	2	51	1.14
22653694--22653785	46	1.9	46	82	10	114	39	6	4	50	1.48
22660139--22660211	36	2.0	36	94	0	128	17	20	9	52	1.73
22661395--22661451	29	2.0	28	89	3	87	54	7	22	15	1.65
22671217--22671407	77	2.5	77	81	7	210	37	8	2	51	1.45
22671599--22671767	76	2.2	76	84	2	205	36	10	2	51	1.48
22672553--22672681	17	7.3	17	66	18	50	35	8	3	52	1.48
22672524--22672670	74	1.9	75	83	6	188	37	8	3	51	1.49
22672559--22672728	74	2.2	76	83	6	202	34	9	2	53	1.48
22672900--22673099	77	2.6	78	82	4	235	36	7	4	51	1.51
22673409--22673603	78	2.5	77	81	5	232	34	7	5	52	1.51
22682588--22682630	17	2.6	16	82	7	59	76	2	2	18	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22682755--22682815	31	2.0	31	96	0	113	27	24	6	40	1.80
22685299--22685381	34	2.4	34	80	6	87	33	4	14	46	1.66
22687680--22687762	5	16.4	5	72	18	57	14	6	2	77	1.07
22687681--22687754	27	2.7	27	85	8	87	14	6	1	77	1.05
22687708--22687772	17	3.8	17	75	17	62	16	4	1	76	1.02
22687788--22688060	59	4.7	58	82	1	323	43	6	14	35	1.72
22691964--22692022	11	5.2	11	83	6	64	81	0	15	3	0.82
22691955--22692030	19	3.7	20	77	20	84	77	0	17	5	0.94
22691955--22692030	10	7.3	10	76	17	66	77	0	17	5	0.94
22691955--22692030	23	3.6	22	76	18	81	77	0	17	5	0.94
22691955--22692038	32	2.7	31	80	10	100	77	0	16	5	0.96
22693292--22694012	42	17.1	42	88	5	1003	23	16	23	36	1.94
22693292--22694012	128	5.7	126	90	3	1076	23	16	23	36	1.94
22693292--22694012	170	4.3	169	89	3	1039	23	16	23	36	1.94
22694199--22694232	6	5.7	6	89	10	52	17	0	0	82	0.67
22694185--22694234	11	4.5	11	87	7	66	18	0	2	80	0.82
22694193--22694278	25	3.6	24	79	13	72	23	3	2	70	1.14
22694261--22694313	25	2.2	24	86	3	70	33	1	0	64	1.05
22694762--22694786	10	2.5	10	100	0	50	16	0	24	60	1.36
22695314--22695448	12	11.5	11	72	19	64	20	2	3	73	1.10
22695314--22695351	4	9.8	4	88	5	60	21	0	2	76	0.91
22695375--22695468	5	17.4	5	80	10	89	17	4	2	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22695360--22695478	17	7.5	16	74	16	88	18	5	1	74	1.08
22695375--22695478	22	4.7	21	76	17	86	17	4	1	75	1.06
22695375--22695448	27	2.7	27	84	14	91	17	2	1	78	0.94
22695698--22695839	72	2.0	71	86	2	196	40	11	9	37	1.75
22695495--22695767	59	4.7	57	83	5	336	43	8	13	35	1.74
22700850--22700892	21	2.1	20	83	12	52	37	0	0	62	0.95
22701836--22701861	9	2.9	9	100	0	52	23	23	11	42	1.86
22702825--22702855	14	2.2	14	94	0	53	19	0	3	77	0.90
22703482--22703635	55	2.9	55	89	4	217	29	6	9	54	1.58
22703534--22703579	23	2.0	23	95	4	85	26	4	8	60	1.44
22703557--22703620	32	2.0	32	87	9	94	28	7	12	51	1.67
22703612--22703654	19	2.3	19	88	8	61	39	4	6	48	1.51
22703719--22703782	24	2.7	24	80	7	76	37	4	6	51	1.48
22703996--22704043	24	2.0	24	88	12	71	29	4	14	52	1.60
22704005--22704059	23	2.4	23	82	11	69	27	5	12	54	1.60
22708657--22708681	12	2.1	12	100	0	50	28	0	8	64	1.22
22711372--22711435	33	1.9	33	96	0	119	25	18	28	28	1.98
22712396--22712834	218	2.0	218	91	1	702	34	13	19	33	1.90
22714299--22714436	73	1.9	74	83	4	181	31	18	17	31	1.94
22718983--22719029	24	2.0	23	83	4	58	57	4	4	34	1.38
22720898--22721377	43	11.5	42	76	11	314	30	12	17	39	1.87
22720930--22721219	127	2.3	128	83	4	347	30	13	16	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22720947--22721377	160	2.6	163	80	7	455	31	12	17	38	1.88
22722284--22722588	55	5.8	54	74	16	234	30	6	9	52	1.60
22722284--22722437	54	2.8	55	85	5	206	31	5	9	53	1.56
22722360--22722429	34	2.1	34	84	7	101	28	7	11	52	1.63
22722358--22722435	31	2.2	36	78	19	94	28	6	10	55	1.58
22722391--22722542	20	7.6	20	75	15	136	30	7	9	51	1.62
22722350--22722545	97	2.0	95	92	4	322	30	6	9	53	1.59
22722313--22722590	151	1.8	151	87	4	418	31	6	9	52	1.61
22722313--22722667	151	2.3	150	81	11	402	31	5	9	53	1.57
22722657--22722689	3	11.0	3	93	0	57	30	0	3	66	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109