genome.fa.s35.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  49  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9071600--9071637	18	2.1	18	95	0	67	0	52	0	47	1.00
9071627--9071685	27	2.2	27	87	6	84	10	47	6	35	1.64
9087687--9087746	20	3.0	19	76	11	57	50	1	0	48	1.11
9092567--9092598	9	3.6	9	91	0	55	9	0	21	68	1.17
9095549--9095579	2	16.0	2	93	6	55	51	0	0	48	1.00
9095928--9095954	2	13.5	2	100	0	54	51	0	0	48	1.00
9101989--9102029	21	1.9	22	85	5	57	0	12	34	53	1.38
9102444--9102468	13	1.9	13	100	0	50	32	8	36	24	1.84
9103213--9103254	17	2.4	18	76	11	52	52	0	0	47	1.00
9103372--9103399	14	2.0	14	100	0	56	57	0	0	42	0.99
9108400--9108441	19	2.2	19	83	12	50	50	0	2	47	1.14
9108972--9109070	34	2.8	34	79	13	94	52	1	1	45	1.14
9109684--9109726	21	2.0	23	86	9	63	58	9	0	32	1.30
9120496--9120521	6	4.3	6	100	0	52	15	0	53	30	1.42
9123326--9123393	19	3.6	19	72	23	54	52	0	1	45	1.09
9123342--9123393	18	2.8	18	73	26	54	51	0	0	48	1.00
9123804--9123840	19	2.0	19	89	5	58	59	0	0	40	0.97
9133209--9133259	26	2.0	25	88	3	75	41	19	15	23	1.90
9151624--9151654	2	16.0	2	93	6	55	51	0	0	48	1.00
9153339--9153378	19	2.0	20	86	13	57	42	0	0	57	0.98
9153381--9153442	31	2.1	31	87	6	92	48	0	0	51	1.00
9153346--9153418	32	2.2	30	78	21	76	45	0	1	53	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9166953--9167245	151	1.9	151	83	4	376	31	11	19	37	1.88
9167398--9167595	107	1.8	108	82	5	258	28	12	8	51	1.67
9167398--9167598	54	3.7	52	79	9	197	27	11	7	52	1.66
9167920--9167962	7	6.4	7	84	7	54	30	2	0	67	1.03
9168043--9168113	24	2.8	25	79	12	65	35	12	7	45	1.70
9169233--9169377	41	3.5	41	85	1	200	44	20	10	24	1.82
9170744--9170782	9	4.0	10	87	12	55	10	7	0	82	0.86
9170744--9170782	19	2.0	20	90	5	62	10	7	0	82	0.86
9181236--9181352	53	2.3	53	85	5	152	23	12	9	54	1.66
9181236--9181376	49	2.8	50	84	8	153	24	11	8	56	1.62
9182740--9182773	18	1.9	18	94	5	61	85	0	0	14	0.60
9187595--9187634	14	2.6	16	88	7	57	42	2	0	55	1.13
9187617--9187663	18	2.7	18	87	12	71	44	0	0	55	0.99
9187617--9187662	19	2.5	19	93	6	78	45	0	0	54	0.99
9188283--9188341	22	2.7	22	82	15	61	42	0	0	57	0.98
9199021--9199066	2	23.0	2	90	0	74	50	4	45	0	1.21
9199213--9199239	2	13.5	2	100	0	54	0	0	48	51	1.00
9201151--9201221	34	2.1	34	86	5	99	52	29	11	7	1.63
9201953--9202002	19	2.5	21	90	9	86	34	4	0	62	1.14
9202327--9202355	11	2.5	12	94	5	51	51	0	0	48	1.00
9202979--9203047	32	2.2	32	86	5	95	60	5	1	31	1.29
9214453--9214506	29	1.9	27	96	0	81	24	16	3	55	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9219784--9219835	12	4.5	12	76	7	54	36	1	1	59	1.19
9233352--9233407	29	2.0	29	89	6	89	35	7	1	55	1.38
9234782--9234813	2	16.0	2	100	0	64	50	0	50	0	1.00
9236590--9236643	21	2.4	22	78	9	56	48	0	3	48	1.19
9238171--9238196	2	13.0	2	100	0	52	50	0	0	50	1.00
9241459--9241522	19	3.2	20	80	17	62	48	0	1	50	1.10
9241493--9241552	31	1.9	31	83	6	77	40	0	0	60	0.97
9250083--9250213	52	2.5	52	81	4	140	28	16	5	50	1.66
9252030--9252069	14	2.9	15	85	10	50	42	2	0	55	1.13
9258989--9259055	33	2.0	33	100	0	134	26	20	11	40	1.88
9259257--9259296	2	20.0	2	94	0	71	50	0	2	47	1.14
9272644--9272782	22	6.3	22	79	8	113	40	3	7	48	1.48
9272644--9272785	44	3.2	43	79	5	135	40	4	7	48	1.50
9272644--9272794	66	2.3	66	80	2	169	41	4	6	47	1.50
9272756--9272801	22	2.1	22	87	0	65	41	10	6	41	1.66
9272908--9272990	22	3.8	21	75	7	67	37	9	6	46	1.61
9273295--9273429	11	12.3	11	66	6	67	42	4	3	49	1.40
9273286--9273371	22	4.0	22	77	4	86	41	3	4	50	1.40
9273282--9273429	66	2.2	66	81	9	160	41	4	5	48	1.45
9273316--9273434	22	5.4	22	81	2	132	42	5	4	48	1.44
9273281--9273409	44	2.9	44	82	4	136	40	4	6	48	1.49
9273433--9273497	22	3.0	22	88	0	94	44	9	1	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9273436--9273506	22	3.2	22	87	0	88	40	9	2	46	1.52
9273466--9273690	22	10.3	22	70	10	93	32	8	9	48	1.66
9273470--9273615	66	2.2	66	76	9	145	32	9	8	49	1.66
9273502--9274121	22	28.2	22	66	14	154	34	8	7	49	1.61
9274422--9274863	22	20.5	22	70	12	159	35	8	5	50	1.56
9274429--9274506	11	7.1	11	71	16	54	41	8	5	44	1.58
9276125--9276203	38	2.2	37	86	8	110	54	2	17	25	1.56
9277087--9277135	16	3.1	17	72	19	52	34	0	6	59	1.22
9277131--9277421	150	1.9	153	83	3	383	45	4	7	41	1.54
9292013--9292075	31	2.0	31	84	6	83	39	0	3	57	1.15
9292600--9292640	17	2.4	18	80	12	50	46	0	7	46	1.30
9292775--9292808	17	2.1	16	88	5	50	64	0	0	35	0.94
9293660--9293684	13	1.9	13	100	0	50	36	0	0	64	0.94
9293875--9293917	19	2.2	21	88	12	65	46	2	0	51	1.13
9294779--9294813	18	1.9	18	88	0	52	51	2	2	42	1.31
9297760--9297794	17	2.1	17	89	10	54	0	28	2	68	1.04
9302956--9303277	161	2.0	157	94	4	565	43	16	19	20	1.88
9303939--9303971	2	16.5	2	100	0	66	48	0	0	51	1.00
9307963--9308136	87	2.0	87	98	0	339	25	16	22	35	1.94
9318773--9318830	27	2.1	27	100	0	116	17	20	17	44	1.86
9325047--9325076	2	15.0	2	100	0	60	50	0	0	50	1.00
9325940--9326002	26	2.4	25	77	15	65	15	6	4	73	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9345639--9345671	3	11.0	3	93	0	57	30	0	3	66	1.06
9350028--9350063	7	5.3	7	93	6	65	0	41	0	58	0.98
9350028--9350063	13	2.6	14	91	8	65	0	41	0	58	0.98
9352820--9352860	18	2.3	18	87	8	57	56	12	4	26	1.56
9358727--9358799	34	2.2	34	87	2	112	38	23	10	27	1.88
9370724--9370778	27	2.0	27	83	13	69	34	0	3	61	1.13
9384398--9384423	5	5.2	5	100	0	52	19	19	0	61	1.35
9389760--9389785	2	13.0	2	100	0	52	50	0	0	50	1.00
9392469--9392504	18	2.0	18	88	0	54	55	2	22	19	1.56
9408508--9408551	13	3.7	11	82	14	52	43	4	6	45	1.51
9408508--9408554	25	1.9	25	91	4	78	44	4	6	44	1.49
9410145--9410172	2	14.0	2	100	0	56	50	0	0	50	1.00
9413471--9413547	34	2.2	35	83	2	93	6	5	10	77	1.10
9413653--9413897	105	2.3	105	83	3	296	34	8	14	42	1.77
9413653--9414179	106	4.9	107	77	10	369	36	9	14	40	1.79
9414021--9414179	53	3.0	53	66	10	135	39	10	11	37	1.77
9414150--9414213	22	3.0	21	72	6	56	31	14	18	35	1.91
9416062--9416100	16	2.4	16	91	0	69	74	0	0	25	0.82
9416977--9417011	18	1.9	18	94	0	61	42	8	20	28	1.81
9417185--9417648	85	5.3	85	74	9	373	34	11	17	35	1.87
9417573--9417602	15	2.0	15	93	0	51	36	13	30	20	1.90
9417185--9417657	41	10.9	43	72	13	290	34	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9417637--9417674	20	1.9	20	94	0	67	36	18	5	39	1.73
9417842--9417875	12	2.7	13	81	9	52	14	5	2	76	1.09
9419182--9419230	18	2.7	18	84	6	64	4	10	4	81	0.95
9419192--9419243	26	2.0	27	92	3	88	5	5	5	82	0.94
9425273--9425311	3	13.0	3	100	0	78	33	0	0	66	0.92
9427551--9427608	20	3.2	19	81	13	77	20	1	3	74	1.06
9438060--9438168	56	1.9	56	94	3	193	21	11	19	47	1.81
9443936--9443985	18	2.7	18	81	6	64	56	4	0	40	1.18
9444043--9444074	15	2.1	15	94	0	55	43	12	3	40	1.58
9454454--9454479	2	13.0	2	100	0	52	0	0	50	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109