genome.fa.s35.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  100  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20022508--20022579	36	2.0	35	86	2	99	40	8	4	47	1.53
20022666--20022739	34	2.1	38	85	10	102	58	2	0	39	1.13
20027585--20027662	16	4.9	16	70	6	52	34	29	12	23	1.92
20034209--20034261	26	2.0	27	88	3	81	49	3	5	41	1.44
20038929--20038979	26	2.0	26	100	0	102	31	15	3	49	1.63
20041909--20042032	62	2.0	62	95	0	221	26	30	20	22	1.98
20043257--20043286	11	2.7	11	94	0	51	30	30	0	40	1.57
20044110--20044142	13	2.4	14	85	10	50	60	9	3	27	1.42
20046167--20046205	20	1.9	21	94	5	71	58	10	7	23	1.56
20046253--20046654	204	2.0	198	91	6	652	37	5	11	46	1.63
20046278--20046654	194	1.9	191	90	7	465	38	5	11	44	1.63
20047357--20047411	16	3.2	16	80	10	65	1	25	0	72	0.94
20047431--20047476	16	2.9	16	84	9	60	2	21	0	76	0.90
20047602--20047635	15	2.3	15	90	5	52	8	14	2	73	1.19
20063025--20063055	9	3.4	9	95	0	53	29	6	12	51	1.65
20063479--20063580	29	3.4	30	78	4	91	36	5	4	52	1.47
20083409--20083458	23	2.2	23	92	0	82	44	6	16	34	1.72
20086431--20086516	44	1.9	44	81	11	104	34	11	12	40	1.80
20086848--20086897	15	3.6	14	76	17	52	66	0	0	34	0.92
20086848--20086903	26	2.1	26	86	3	76	69	0	0	30	0.89
20087942--20087983	3	14.7	3	85	14	54	69	0	2	28	1.01
20088648--20088697	26	2.0	26	96	4	93	52	4	4	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20089571--20089609	20	1.9	21	84	5	53	30	12	0	56	1.37
20100343--20100380	19	2.0	19	85	10	51	7	15	2	73	1.17
20116081--20116149	22	3.4	21	75	9	54	36	1	8	53	1.41
20121378--20121436	12	4.7	12	80	17	66	79	3	16	0	0.86
20121376--20121431	28	2.0	29	89	10	89	75	7	17	0	1.03
20121381--20121436	13	3.9	14	75	15	53	80	3	16	0	0.85
20122917--20122971	28	1.9	29	85	3	76	41	9	1	47	1.46
20125251--20125309	29	2.0	29	84	12	77	45	0	3	50	1.18
20125393--20125438	22	2.0	23	83	4	58	47	6	0	45	1.28
20125408--20125452	23	2.0	23	81	0	54	44	4	4	46	1.43
20125542--20125663	60	2.0	61	92	4	203	36	9	16	36	1.82
20125663--20125708	22	2.1	21	88	4	65	54	0	4	41	1.20
20125731--20125762	14	2.4	13	90	10	55	56	0	0	43	0.99
20126422--20126450	14	2.1	14	93	6	51	51	0	3	44	1.18
20129031--20129097	30	2.2	31	84	7	84	37	0	2	59	1.13
20129031--20129117	13	7.0	13	72	17	60	37	0	3	58	1.15
20130359--20130396	8	4.8	8	81	12	51	23	0	0	76	0.79
20139950--20140006	21	2.7	21	84	13	64	33	0	0	66	0.92
20139947--20140008	30	2.0	31	84	9	83	33	0	0	66	0.92
20139980--20140014	14	2.4	14	90	4	52	28	0	0	71	0.86
20140410--20140511	4	23.5	4	74	20	57	51	0	0	47	1.07
20140410--20140482	15	4.6	15	75	21	69	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20140420--20140509	5	18.8	5	76	15	68	54	1	0	44	1.07
20140410--20140513	45	2.3	46	83	12	142	50	0	0	48	1.07
20140572--20140603	13	2.4	14	85	15	50	59	0	0	40	0.97
20140661--20140690	16	1.9	15	93	6	51	40	0	0	60	0.97
20140749--20140802	4	13.8	4	74	18	51	48	1	1	48	1.23
20154351--20154396	23	1.9	25	86	8	69	21	10	10	56	1.64
20156127--20156167	20	2.0	20	100	0	82	34	31	14	19	1.92
20160996--20161032	18	2.1	18	89	0	56	48	10	16	24	1.77
20161436--20161463	11	2.5	11	100	0	56	39	0	0	60	0.97
20160835--20161475	249	2.7	239	83	9	787	44	3	10	41	1.56
20163166--20163200	12	2.7	13	86	13	54	40	2	0	57	1.14
20163180--20163225	22	2.1	22	83	0	56	52	0	0	47	1.00
20164504--20164572	32	2.2	32	94	0	120	33	30	15	20	1.94
20164553--20164591	19	2.1	19	100	0	78	25	25	23	25	2.00
20164515--20164653	51	2.8	51	95	2	246	28	28	17	24	1.98
20164638--20164666	14	2.1	14	100	0	58	37	34	13	13	1.85
20164652--20165136	57	8.4	57	73	15	372	28	24	19	27	1.98
20164725--20164995	19	14.4	19	66	11	119	28	23	19	28	1.98
20164740--20165006	37	7.1	37	71	16	165	29	22	18	28	1.98
20164746--20165063	94	3.4	94	97	0	600	28	23	19	28	1.98
20164787--20165190	151	2.7	149	73	15	429	28	25	19	27	1.98
20164971--20165156	57	3.4	52	91	5	232	26	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20165133--20165190	19	3.1	19	87	0	89	29	22	18	29	1.98
20165089--20165222	70	1.9	69	87	1	196	29	26	18	26	1.98
20165422--20165475	25	2.2	25	89	0	81	38	14	9	37	1.79
20169138--20169164	12	2.2	12	100	0	54	11	0	22	66	1.22
20169243--20169826	291	2.0	291	98	0	1123	29	22	18	29	1.97
20170082--20170112	16	1.9	16	93	0	53	6	12	3	77	1.08
20169861--20170321	221	2.1	221	95	1	838	12	31	6	50	1.64
20170865--20170903	19	2.1	19	85	0	51	28	5	46	20	1.72
20178453--20178484	13	2.3	15	89	10	50	43	0	0	56	0.99
20179538--20179599	31	1.9	33	84	12	85	40	4	0	54	1.22
20182026--20182093	35	1.9	35	96	0	127	25	16	14	44	1.85
20183982--20184034	27	1.9	28	88	11	83	41	3	1	52	1.30
20184026--20184067	18	2.3	18	80	11	50	40	2	0	57	1.12
20184029--20184070	19	2.3	19	87	4	59	42	2	0	54	1.13
20184038--20184094	30	2.0	28	82	6	69	38	1	0	59	1.08
20184250--20184279	15	1.9	16	93	6	53	50	0	0	50	1.00
20185026--20185073	12	4.1	12	78	5	62	60	2	0	37	1.09
20185020--20185067	23	2.1	23	88	7	71	56	2	0	41	1.11
20185027--20185103	30	2.6	30	80	10	95	61	1	1	36	1.13
20185120--20185153	9	3.9	9	84	7	52	61	0	0	38	0.96
20185569--20185661	27	3.4	27	72	20	86	47	3	2	47	1.30
20185629--20185668	18	2.2	19	86	4	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20185926--20185992	22	3.1	21	76	20	68	58	1	0	40	1.07
20186020--20186055	18	2.1	18	89	5	56	72	2	0	25	0.98
20188297--20188333	17	2.2	17	90	0	56	45	2	0	51	1.15
20190895--20191004	4	28.2	4	69	12	52	32	1	0	64	1.10
20190887--20190959	31	2.4	31	88	8	107	34	1	0	64	1.02
20190891--20191031	25	5.5	26	74	14	96	31	3	1	63	1.20
20190892--20191004	47	2.3	50	81	13	146	32	1	0	64	1.10
20191790--20191848	3	19.7	3	96	0	55	20	0	11	67	1.21
20203430--20203637	86	2.4	86	77	8	226	25	14	19	40	1.89
20203422--20203637	44	5.0	44	74	8	201	25	14	18	41	1.88
20203619--20203657	20	2.0	20	94	0	69	20	20	23	35	1.96
20203577--20203702	65	2.0	64	91	1	207	22	14	21	42	1.89
20203639--20203968	45	7.5	43	81	6	349	23	14	20	41	1.89
20203638--20203967	88	3.7	86	81	8	362	23	14	19	41	1.89
20203639--20203965	131	2.5	130	81	7	390	23	14	19	41	1.89
20204178--20204416	14	18.8	12	63	25	59	29	3	2	64	1.22
20204180--20204256	35	2.2	34	86	6	102	29	2	2	64	1.20
20204251--20204416	8	22.9	7	68	20	60	28	4	1	65	1.22
20204215--20204360	53	2.9	50	82	12	169	28	4	2	65	1.22
20204216--20204373	23	6.1	26	73	24	131	28	4	2	64	1.26
20204277--20204419	23	6.1	23	71	18	84	28	4	1	65	1.22
20204372--20204412	3	13.7	3	85	10	57	31	4	0	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20204377--20204411	17	2.1	17	94	0	61	34	2	0	62	1.10
20204184--20204416	27	8.8	26	70	25	88	30	3	2	63	1.23
20205173--20205208	15	2.3	16	90	4	56	25	5	0	69	1.10
20205176--20205215	21	1.9	21	94	0	71	25	5	0	70	1.08
20205297--20205509	58	3.7	57	92	1	345	43	5	12	38	1.64
20205297--20205509	115	1.9	115	93	0	372	43	5	12	38	1.64
20209033--20209059	2	13.5	2	100	0	54	51	0	0	48	1.00
20212441--20212491	22	2.2	22	82	6	57	52	0	1	45	1.12
20212455--20212504	22	2.3	22	93	6	84	54	2	4	40	1.31
20215521--20215558	17	2.2	17	86	9	51	73	0	2	23	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109