genome.fa.s35.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  31  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5155091--5155282	103	1.8	105	80	7	230	16	18	12	52	1.75
5155348--5156841	35	42.5	35	72	7	639	19	17	13	50	1.78
5155878--5161702	177	33.7	175	66	13	662	18	17	12	51	1.77
5156285--5156753	107	4.4	106	74	8	328	16	16	15	51	1.77
5156230--5156697	142	3.3	140	77	7	390	17	16	14	51	1.77
5156887--5156988	36	2.9	35	75	5	98	17	18	12	50	1.77
5157222--5158025	35	22.9	35	68	11	303	19	15	13	51	1.75
5157660--5157792	72	1.9	72	84	4	180	21	15	13	49	1.79
5157576--5157803	106	2.1	107	80	4	246	19	14	13	52	1.75
5157754--5158041	140	2.1	140	82	9	347	17	14	12	55	1.70
5158090--5158258	35	4.8	35	75	11	130	17	17	11	53	1.73
5158272--5158347	35	2.2	35	83	6	93	21	17	10	51	1.74
5158472--5158542	35	2.0	35	88	0	106	26	18	8	46	1.77
5158488--5158807	35	9.0	35	71	10	159	20	15	13	51	1.76
5158632--5158755	36	3.5	35	71	12	101	19	12	12	54	1.70
5158597--5158757	72	2.3	71	81	4	189	19	13	12	54	1.71
5158710--5158943	70	3.3	70	73	7	179	19	16	12	51	1.76
5158890--5158977	36	2.5	36	81	9	101	19	18	12	50	1.78
5159041--5159123	35	2.4	35	78	8	80	15	16	8	59	1.60
5159168--5159434	35	7.7	35	69	10	145	17	17	13	51	1.76
5159248--5159373	67	1.9	67	81	3	155	16	18	14	50	1.78
5159241--5159432	103	1.8	105	80	7	230	16	18	12	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5159498--5160993	35	42.5	35	72	7	648	19	17	13	50	1.78
5160437--5160905	107	4.4	106	74	8	328	16	16	15	51	1.77
5160382--5160849	142	3.3	140	77	7	390	17	16	14	51	1.77
5159505--5162161	70	37.7	70	68	12	579	19	16	13	50	1.77
5161209--5161302	36	2.7	35	74	9	93	18	17	11	53	1.73
5161369--5162171	35	22.9	35	69	10	295	19	16	13	51	1.76
5162094--5162187	35	2.6	36	83	5	102	18	13	11	56	1.67
5162221--5162261	20	2.0	20	90	0	64	12	12	12	63	1.53
5162241--5162905	35	18.9	35	74	7	159	18	16	12	52	1.75
5162239--5162475	106	2.2	107	79	7	245	17	16	13	52	1.75
5162269--5162893	70	8.9	69	71	8	255	19	16	12	51	1.75
5162290--5162630	106	3.2	105	75	6	269	17	15	14	52	1.75
5162267--5162565	141	2.1	141	83	4	372	18	15	13	52	1.74
5162304--5162614	141	2.2	141	82	4	360	17	15	14	53	1.74
5162552--5162893	105	3.3	103	76	8	298	19	16	11	51	1.75
5162727--5162917	70	2.7	70	76	7	206	19	17	10	51	1.74
5162853--5163051	35	5.6	36	70	11	99	20	15	13	51	1.76
5162860--5163057	71	2.8	70	78	6	202	19	14	14	51	1.76
5163162--5163246	36	2.4	36	82	2	100	18	17	11	51	1.75
5163162--5163262	35	2.9	35	80	4	105	17	15	11	54	1.71
5163289--5163335	21	2.2	21	92	0	76	17	10	10	61	1.55
5163310--5164162	35	24.8	35	70	13	346	17	18	13	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5163725--5163882	36	4.5	34	77	7	127	16	18	13	51	1.76
5164483--5164672	105	1.8	105	80	2	229	18	17	14	49	1.80
5164528--5164778	105	2.4	105	78	5	240	19	16	11	51	1.75
5164289--5164778	35	14.0	36	72	10	207	19	17	12	50	1.78
5164893--5164974	36	2.3	35	85	4	101	18	17	13	51	1.77
5165416--5165655	35	6.8	36	77	7	170	19	14	13	53	1.73
5165413--5165641	71	3.2	71	78	8	207	18	14	13	53	1.73
5165416--5165689	35	7.8	34	77	8	156	18	13	13	54	1.71
5165779--5165861	35	2.4	35	87	4	123	22	20	8	48	1.76
5165841--5165921	35	2.3	35	85	6	101	14	11	18	55	1.68
5165922--5165980	31	1.9	31	96	0	109	27	15	13	44	1.84
5165977--5166067	36	2.6	36	85	1	112	14	17	16	51	1.76
5166013--5166099	35	2.5	36	83	7	99	16	20	13	49	1.79
5166228--5166377	35	4.3	35	70	9	90	16	20	15	48	1.82
5166315--5166395	35	2.3	35	85	6	101	16	18	12	53	1.73
5166336--5166414	36	2.2	35	81	2	86	18	18	11	50	1.76
5166508--5167803	35	36.9	35	69	10	352	19	16	13	51	1.76
5166510--5167669	70	16.5	71	71	9	515	19	16	12	51	1.76
5167502--5167668	69	2.4	70	84	6	196	19	14	14	50	1.77
5167706--5167819	35	3.3	35	76	4	113	14	13	16	56	1.68
5167867--5169626	35	49.8	35	68	13	452	18	17	13	50	1.77
5168215--5168365	72	2.1	72	84	7	193	19	19	9	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5167867--5168373	106	4.8	105	74	10	329	17	17	13	52	1.75
5167869--5168430	106	5.4	105	74	10	265	17	17	13	51	1.77
5169143--5169469	106	3.1	104	74	11	272	20	15	11	51	1.75
5169829--5170107	141	2.0	141	80	5	323	19	13	13	53	1.73
5169828--5170107	35	8.0	34	76	5	211	19	13	13	52	1.73
5170016--5170197	91	2.0	91	93	0	310	20	13	13	52	1.74
5170227--5170526	142	2.1	142	82	2	372	17	18	14	50	1.79
5170276--5170515	107	2.3	106	83	6	290	17	17	14	50	1.79
5170131--5170526	35	11.2	35	76	4	256	17	17	14	51	1.77
5170578--5170784	35	6.0	34	70	14	118	16	17	12	53	1.72
5170909--5171611	35	20.0	35	72	9	308	19	17	13	49	1.79
5171130--5171226	34	2.8	35	83	9	126	21	17	12	48	1.80
5170909--5171562	71	9.3	70	72	9	211	19	16	13	50	1.79
5170909--5177412	105	61.7	105	67	13	585	18	16	13	51	1.76
5171524--5171679	35	4.5	35	76	0	132	17	15	12	54	1.71
5171701--5171785	36	2.4	35	80	5	82	23	11	10	54	1.68
5171828--5171903	21	4.0	21	70	20	67	17	17	9	56	1.65
5171850--5178063	105	59.3	104	68	13	799	18	16	13	51	1.76
5171849--5172784	35	26.7	35	73	8	451	18	15	13	51	1.76
5173004--5173050	21	2.2	21	84	0	58	12	12	12	61	1.57
5173412--5173734	139	2.3	140	78	6	325	19	17	12	50	1.77
5173025--5173925	35	25.7	35	73	8	409	19	15	13	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5174145--5174190	21	2.2	20	88	3	65	17	15	10	56	1.67
5174165--5174935	35	21.8	35	74	11	224	18	16	13	50	1.78
5174166--5174901	70	10.4	69	73	12	364	18	17	13	50	1.78
5174992--5175076	36	2.4	36	84	2	109	20	17	8	54	1.68
5174859--5175092	35	6.7	35	67	11	106	17	13	12	56	1.67
5175210--5178465	70	46.2	70	68	12	563	18	17	13	51	1.77
5175142--5176073	211	4.5	210	73	9	573	17	17	14	51	1.77
5175142--5177363	35	64.3	35	70	11	656	18	17	13	51	1.77
5175492--5176704	377	3.2	375	83	3	1367	17	17	13	51	1.77
5175887--5176142	142	1.8	141	84	4	354	17	17	16	48	1.81
5176545--5176927	174	2.2	175	79	5	434	17	16	13	52	1.75
5176968--5177229	71	3.7	71	73	10	184	21	16	10	50	1.75
5177109--5177225	36	3.4	34	76	14	107	23	17	7	51	1.71
5177478--5177562	17	4.8	18	68	21	72	17	20	5	56	1.61
5177508--5178522	35	28.3	35	70	15	369	18	17	13	50	1.78
5177824--5178015	107	1.8	105	80	4	233	18	17	13	51	1.76
5177684--5178651	448	2.2	441	88	3	1451	18	17	13	50	1.78
5178543--5178731	35	5.4	35	79	6	170	17	19	11	51	1.76
5179845--5179947	36	2.9	36	79	4	102	19	14	13	52	1.74
5180042--5180604	71	7.9	71	72	10	339	17	16	15	51	1.77
5180045--5180605	35	15.8	35	75	8	332	17	16	15	51	1.77
5179974--5180604	71	8.9	67	70	14	227	17	16	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5179975--5180622	35	18.3	35	74	9	218	17	16	14	51	1.77
5180635--5180925	35	8.3	34	73	10	165	18	19	11	50	1.77
5180512--5181245	372	2.0	375	79	6	803	19	20	11	49	1.78
5181007--5181911	35	25.8	35	70	12	365	19	16	12	51	1.76
5181497--5181702	72	2.9	72	78	4	195	20	15	13	50	1.77
5181686--5181946	140	1.9	138	80	7	303	19	14	13	52	1.75
5181975--5182030	18	3.1	18	66	19	53	14	14	10	60	1.58
5181975--5184984	35	86.8	35	68	13	663	17	17	13	51	1.77
5182012--5182392	106	3.6	104	72	15	285	18	16	14	50	1.78
5183007--5183108	36	2.9	35	78	8	107	16	19	12	50	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109