genome.fa.s35.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  107  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22136039--22136078	3	13.3	3	89	10	64	0	32	2	65	1.06
22141503--22141542	19	2.0	20	95	4	73	25	15	7	52	1.68
22146206--22146264	24	2.5	24	88	0	82	5	22	16	55	1.60
22149614--22149658	21	2.2	20	84	4	54	48	0	0	51	1.00
22149901--22149945	20	2.2	21	88	11	67	60	0	0	40	0.97
22150056--22150168	51	2.3	48	83	6	127	47	6	9	36	1.62
22150143--22150204	32	1.9	32	90	0	97	59	6	3	30	1.38
22150183--22150217	17	2.1	16	89	5	52	51	5	5	37	1.50
22157098--22157131	4	8.5	4	93	0	59	50	20	0	29	1.49
22159492--22159516	13	1.9	13	100	0	50	76	0	0	24	0.80
22160392--22160421	14	2.1	14	100	0	60	13	13	53	20	1.72
22162826--22162998	88	2.0	87	90	1	274	20	26	21	32	1.97
22163535--22163569	3	11.7	3	93	0	61	31	2	0	65	1.07
22170875--22170905	2	16.0	2	93	6	55	51	0	0	48	1.00
22174681--22174710	1	30.0	1	100	0	60	0	0	0	100	0.00
22175674--22175775	48	2.1	48	94	1	179	39	14	24	21	1.91
22177748--22177869	51	2.4	51	78	14	126	39	1	0	59	1.08
22177834--22177879	24	2.0	24	87	8	69	28	0	0	71	0.86
22181434--22181473	18	2.2	18	86	0	53	55	0	7	37	1.29
22184938--22185073	52	2.6	52	84	4	177	27	22	7	42	1.80
22185110--22185149	11	3.6	11	93	0	71	50	27	0	22	1.50
22191112--22191142	7	4.4	7	100	0	62	38	12	32	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22192642--22192690	2	24.5	2	100	0	98	48	51	0	0	1.00
22195322--22195401	40	2.0	40	95	0	142	32	22	13	31	1.93
22206596--22206638	20	2.0	22	91	8	72	39	2	0	58	1.11
22207237--22207272	8	4.5	8	92	0	63	86	0	13	0	0.58
22207240--22207283	19	2.3	20	80	11	56	81	2	15	0	0.78
22212792--22212835	22	2.0	22	90	0	70	43	11	11	34	1.77
22216600--22216651	25	2.1	25	85	0	68	42	19	21	17	1.89
22216612--22216695	26	3.3	27	80	11	97	44	14	23	17	1.86
22216934--22216977	22	2.0	22	86	0	61	38	15	13	31	1.87
22230290--22230333	22	2.0	22	95	0	79	43	13	11	31	1.80
22232290--22232419	63	2.1	63	88	0	188	33	13	26	26	1.93
22234406--22234447	22	1.9	22	95	0	75	42	9	11	35	1.74
22234566--22234730	84	2.0	84	93	0	285	28	10	27	33	1.89
22247286--22247332	19	2.6	18	76	6	51	57	2	6	34	1.36
22247388--22247470	18	4.4	18	73	19	62	44	2	1	51	1.22
22248564--22248611	20	2.4	20	96	0	87	35	10	8	45	1.68
22252090--22252165	32	2.4	32	82	4	84	43	2	3	50	1.34
22252934--22252963	3	10.3	3	92	7	53	0	33	0	66	0.92
22269636--22269662	2	13.5	2	100	0	54	51	0	0	48	1.00
22271007--22271054	22	2.1	23	85	11	64	35	0	4	60	1.16
22277066--22277090	2	12.5	2	100	0	50	0	0	48	52	1.00
22296161--22296197	19	1.9	19	100	0	74	32	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22296356--22296416	26	2.3	26	94	0	104	34	29	6	29	1.83
22297479--22297614	68	2.0	67	89	1	209	38	25	15	19	1.91
22299723--22300175	152	3.0	151	92	1	732	35	8	17	38	1.80
22310953--22310997	23	1.9	24	81	4	56	33	0	0	66	0.92
22311317--22311344	7	4.0	7	100	0	56	42	14	14	28	1.84
22324792--22324826	2	18.0	2	88	5	54	51	2	0	45	1.16
22324826--22324858	2	16.5	2	100	0	66	51	0	48	0	1.00
22350925--22350988	28	2.2	31	78	16	73	54	7	1	35	1.39
22351217--22351242	2	13.0	2	100	0	52	50	0	0	50	1.00
22355236--22355265	3	10.0	3	100	0	60	66	0	0	33	0.92
22363291--22363348	1	58.0	1	100	0	116	0	0	0	100	0.00
22365978--22366056	38	2.1	38	97	0	149	54	21	11	12	1.69
22366369--22366425	28	2.0	28	93	0	96	38	24	3	33	1.73
22372955--22372993	18	2.1	19	85	4	53	64	0	0	35	0.94
22374678--22374718	19	2.3	19	88	12	61	51	0	0	48	1.00
22374744--22374805	28	2.1	31	85	11	85	43	0	0	56	0.99
22374861--22374890	14	2.1	14	93	0	51	56	0	3	40	1.16
22374852--22374904	23	2.3	23	70	6	54	45	0	1	52	1.11
22379666--22379950	141	2.0	141	100	0	570	24	9	13	52	1.69
22382122--22382163	2	21.5	2	95	4	77	0	50	0	50	1.00
22382726--22382752	2	13.5	2	100	0	54	51	0	0	48	1.00
22385997--22386040	23	1.9	23	81	9	54	18	15	29	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22395312--22396946	539	3.0	540	91	3	2552	35	12	15	35	1.86
22397707--22397821	57	2.0	57	88	3	169	22	20	13	43	1.86
22398334--22398366	2	16.5	2	100	0	66	0	48	0	51	1.00
22417284--22417326	16	2.6	18	82	10	56	74	6	2	16	1.14
22417458--22417487	2	15.0	2	100	0	60	50	0	0	50	1.00
22417906--22417954	22	2.2	22	81	0	62	32	2	2	63	1.17
22424235--22424311	28	2.6	30	87	6	104	49	1	0	49	1.09
22424389--22424440	26	2.0	26	84	3	68	71	1	5	21	1.17
22429442--22429507	30	2.2	29	80	15	73	34	1	3	60	1.21
22429814--22429873	30	2.1	28	84	9	77	58	6	0	35	1.24
22429813--22429883	28	2.6	26	79	16	72	59	5	0	35	1.21
22451926--22452004	18	4.2	19	75	16	67	64	1	10	24	1.32
22451934--22452004	36	2.0	35	88	2	106	63	1	9	25	1.34
22451940--22452031	36	2.5	36	82	5	96	63	3	11	21	1.43
22452056--22452106	25	2.1	25	85	3	68	72	1	5	19	1.15
22452139--22452191	17	3.1	17	71	10	54	62	7	5	24	1.44
22452802--22452857	18	3.0	18	73	19	51	66	10	3	19	1.37
22452802--22452864	20	3.2	20	73	4	58	66	9	3	20	1.34
22452841--22452883	15	3.0	15	76	13	54	69	4	2	23	1.18
22453086--22453137	20	2.5	22	81	15	65	32	0	1	65	1.04
22460037--22460171	21	6.4	21	75	8	80	17	37	14	29	1.90
22460061--22460203	42	3.4	42	80	0	151	18	35	15	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22460059--22460203	63	2.3	63	78	0	137	19	35	15	29	1.92
22460256--22460350	21	4.5	21	84	2	111	25	38	10	25	1.87
22460271--22460373	42	2.5	42	83	0	125	26	39	9	24	1.86
22460256--22460635	63	6.0	63	72	7	173	25	40	10	23	1.85
22460385--22460570	21	8.9	21	77	2	122	24	44	7	23	1.79
22460307--22460571	21	12.6	21	76	2	104	24	43	8	23	1.82
22460562--22460611	21	2.4	21	82	0	55	30	34	12	24	1.91
22460364--22460599	42	5.6	42	79	1	186	25	41	9	23	1.85
22460577--22460620	21	2.1	21	86	0	61	34	29	13	22	1.93
22460531--22460666	63	2.2	63	78	7	143	28	35	12	23	1.91
22468840--22468873	3	11.3	3	100	0	68	0	35	0	64	0.94
22477826--22477853	2	14.0	2	100	0	56	50	0	0	50	1.00
22480873--22480900	2	14.0	2	100	0	56	0	50	0	50	1.00
22480900--22480927	2	14.0	2	100	0	56	50	0	0	50	1.00
22483733--22483769	2	18.5	2	88	0	56	48	0	2	48	1.15
22485748--22485819	27	2.7	27	71	12	69	43	0	1	55	1.08
22485761--22485814	14	4.0	13	75	15	56	38	0	1	59	1.08
22485800--22485853	22	2.5	22	81	3	65	46	1	0	51	1.11
22485847--22485877	12	2.6	12	89	0	53	22	0	0	77	0.77
22500096--22500243	78	1.9	78	83	4	190	39	16	15	28	1.89
22502485--22502511	2	13.5	2	100	0	54	48	0	0	51	1.00
22513373--22513442	2	35.0	2	85	0	50	50	12	0	37	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22513586--22513619	16	2.1	16	88	5	50	26	2	11	58	1.47
22513602--22513675	21	3.5	21	77	5	69	37	6	9	45	1.63
22514015--22514625	44	13.9	43	68	13	181	39	9	4	45	1.58
22514027--22514243	22	9.9	22	70	10	140	39	7	6	45	1.60
22514027--22514243	66	3.3	67	76	6	158	39	7	6	45	1.60
22514147--22514360	118	1.8	118	83	8	283	41	9	5	43	1.60
22514263--22514648	22	17.8	21	69	14	110	39	10	3	46	1.55
22514484--22514517	16	2.2	15	89	5	50	38	5	2	52	1.41
22514538--22514648	43	2.5	45	82	7	122	40	9	1	47	1.47
22514664--22514716	22	2.4	22	87	0	70	33	3	7	54	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109