genome.fa.s35.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  62  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12385069--12385164	31	3.1	30	79	7	104	54	0	0	45	0.99
12385050--12385120	26	2.8	26	74	18	76	52	1	0	46	1.09
12385137--12385198	21	2.9	21	75	15	65	51	1	0	46	1.10
12385142--12385210	23	2.9	23	80	10	68	50	1	0	47	1.09
12386030--12386095	26	2.6	25	81	9	80	45	1	4	48	1.32
12386116--12386160	19	2.4	18	85	7	54	55	0	0	44	0.99
12386129--12386184	18	3.2	18	75	17	55	53	3	0	42	1.18
12386997--12387021	12	2.1	12	100	0	50	28	8	0	64	1.22
12391300--12391346	25	1.9	24	82	4	58	29	2	10	57	1.44
12393975--12394004	2	15.0	2	100	0	60	50	0	0	50	1.00
12399107--12399151	1	45.0	1	81	0	54	91	8	0	0	0.43
12399107--12399155	7	7.4	7	90	6	68	89	10	0	0	0.48
12400155--12400195	21	2.0	21	100	0	82	4	14	21	58	1.55
12407586--12407652	35	1.9	35	84	6	91	29	19	7	43	1.78
12414079--12414112	7	4.9	7	88	0	50	41	0	0	58	0.98
12418316--12418341	2	13.0	2	100	0	52	50	0	50	0	1.00
12429533--12429559	8	3.4	8	100	0	54	88	0	0	11	0.50
12433224--12433300	32	2.5	31	82	2	100	32	9	12	45	1.74
12434225--12434257	17	1.9	17	88	11	50	42	0	0	57	0.98
12440708--12440782	31	2.5	31	87	10	102	45	8	0	46	1.32
12440708--12440799	31	2.8	33	80	18	97	42	7	0	50	1.31
12442348--12442388	12	3.5	12	78	15	50	60	2	12	24	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12449900--12449949	19	2.6	19	73	17	50	42	0	0	58	0.98
12467360--12467422	12	5.2	13	73	17	55	53	0	0	46	1.00
12468714--12468755	17	2.3	17	88	12	57	33	0	0	66	0.92
12468774--12468813	20	2.0	20	85	0	53	47	0	0	52	1.00
12469627--12469659	12	2.8	12	86	13	50	66	0	0	33	0.92
12472364--12472396	10	3.2	10	91	8	57	42	0	0	57	0.98
12487135--12487166	2	16.0	2	93	0	55	50	0	3	46	1.17
12489715--12489739	11	2.3	11	100	0	50	60	0	28	12	1.32
12504068--12504123	24	2.3	25	80	17	64	57	0	5	37	1.22
12504697--12506170	493	3.0	490	91	1	2366	37	10	10	40	1.75
12504759--12506170	488	2.9	477	88	4	2011	37	10	11	40	1.76
12516610--12516666	30	1.9	30	88	0	87	49	5	10	35	1.60
12529478--12529808	164	2.0	164	91	0	536	45	19	15	19	1.85
12531660--12531697	18	2.1	19	85	5	51	34	0	7	57	1.28
12532540--12532618	12	7.2	12	67	30	52	46	0	1	51	1.08
12532571--12532613	20	2.2	20	91	0	68	46	0	2	51	1.13
12532540--12532630	32	2.8	33	83	8	109	47	0	1	51	1.07
12541737--12541791	27	2.0	27	86	6	76	41	0	1	56	1.10
12544213--12544264	25	2.1	25	96	0	95	50	0	15	34	1.45
12547506--12547531	13	2.0	13	100	0	52	69	7	7	15	1.35
12549055--12549088	2	17.0	2	93	0	59	50	0	2	47	1.16
12549496--12549547	26	2.0	26	96	0	95	48	3	23	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12556574--12556614	20	2.0	20	85	4	55	63	0	0	36	0.95
12556579--12556616	18	2.1	18	85	14	51	63	0	0	36	0.95
12557491--12557586	29	3.3	30	72	17	78	32	2	3	62	1.22
12557562--12557597	18	2.0	19	89	10	58	41	5	2	50	1.40
12559834--12559866	17	1.9	17	88	11	50	81	0	6	12	0.85
12563791--12563830	20	2.0	20	85	5	53	77	0	10	12	0.99
12565780--12565819	20	2.0	20	100	0	80	55	25	10	10	1.64
12570211--12570259	23	2.1	23	88	0	71	34	2	20	42	1.64
12571230--12571274	18	2.6	18	85	3	65	24	0	2	73	0.95
12571230--12571279	8	5.7	9	79	13	59	26	0	2	72	0.96
12571445--12571488	19	2.2	21	88	8	65	45	4	2	47	1.35
12571463--12571516	28	1.9	28	85	7	74	50	7	0	42	1.30
12571463--12571517	29	1.9	28	82	10	67	50	7	0	41	1.30
12576469--12576500	11	2.6	13	80	19	50	6	34	9	50	1.60
12586538--12586610	26	2.9	26	84	8	89	46	1	2	49	1.24
12586573--12586624	15	3.6	14	80	14	61	48	1	0	50	1.12
12586642--12586724	28	3.0	28	74	11	82	40	4	1	53	1.30
12586732--12586774	17	2.7	16	79	10	52	44	2	4	48	1.36
12588208--12588286	34	2.3	34	86	4	106	46	2	7	43	1.45
12588307--12588386	34	2.4	34	85	4	99	46	2	6	45	1.42
12588335--12588386	15	3.1	16	70	20	52	50	0	3	46	1.20
12589506--12589544	20	2.0	19	85	14	53	5	2	15	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12590816--12590861	15	3.0	16	87	6	60	23	4	6	65	1.35
12591001--12591053	2	27.5	2	77	7	56	50	1	1	45	1.23
12593642--12593691	22	2.3	22	85	0	64	36	12	6	46	1.66
12593658--12593733	22	3.5	22	83	0	98	38	5	6	50	1.51
12593658--12593741	44	1.9	44	85	0	114	38	4	8	48	1.54
12593772--12593831	30	2.0	30	83	6	77	38	11	6	43	1.68
12593808--12593923	42	2.7	44	77	10	116	36	9	7	46	1.65
12594450--12594535	22	3.9	22	76	3	73	39	9	4	46	1.57
12594774--12594938	22	7.5	21	75	13	120	42	7	4	45	1.52
12594774--12594934	44	3.6	45	78	12	140	42	6	4	45	1.50
12594774--12594938	66	2.5	66	80	7	176	42	7	4	45	1.52
12594959--12595591	22	29.0	22	70	9	179	36	8	6	48	1.60
12595243--12595655	153	2.7	152	79	9	378	35	7	5	50	1.54
12595973--12596062	22	4.1	23	78	9	82	35	10	2	52	1.47
12596098--12596158	22	2.8	22	75	5	61	31	3	6	59	1.39
12596177--12596320	22	6.6	22	74	4	78	36	9	4	50	1.55
12599445--12599478	17	2.0	17	88	11	52	50	0	0	50	1.00
12603871--12603917	24	2.0	24	95	0	85	25	29	0	44	1.54
12605936--12606244	158	2.0	151	91	4	492	36	9	6	47	1.60
12607866--12607908	10	4.4	10	77	16	54	37	2	2	58	1.24
12613228--12613291	22	3.0	22	76	17	62	43	6	9	40	1.62
12615125--12615240	57	2.1	56	90	4	180	51	6	12	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12619075--12619114	20	2.0	20	100	0	80	35	5	20	40	1.74
12623987--12624051	30	2.2	30	82	0	76	43	38	9	9	1.69
12624065--12624150	30	2.8	30	79	10	86	37	31	17	13	1.89
12624133--12624227	30	3.2	30	83	3	111	40	30	14	14	1.87
12628005--12628106	42	2.5	39	81	10	105	50	0	0	48	1.14
12628037--12628118	41	2.0	42	83	13	107	52	0	2	45	1.14
12630336--12630739	199	2.0	199	100	0	808	45	19	8	25	1.79
12639517--12639566	26	1.9	26	84	8	66	54	2	0	44	1.11
12640083--12640130	20	2.3	21	79	13	55	39	0	0	60	0.97
12640092--12640129	20	1.9	19	89	5	58	31	0	0	68	0.90
12640092--12640128	11	3.5	11	82	14	51	32	0	0	67	0.91
12641502--12641550	22	2.3	20	86	10	62	44	0	0	55	0.99
12641502--12641559	23	2.7	21	77	15	64	50	0	0	50	1.00
12642816--12642884	20	3.5	19	78	9	66	52	4	1	42	1.30
12642816--12642964	9	16.4	9	65	16	67	51	2	3	42	1.32
12642870--12642928	26	2.3	26	82	8	68	52	1	1	44	1.21
12642903--12642977	17	4.4	16	77	12	62	54	1	4	40	1.27
12642961--12643004	18	2.4	18	88	3	61	68	2	2	27	1.14
12643102--12643145	19	2.2	20	88	4	63	45	6	2	45	1.42
12643203--12643246	19	2.4	19	88	3	63	70	0	2	27	0.99
12643205--12643259	27	2.0	29	86	13	80	69	0	1	29	0.99
12643266--12643308	20	2.2	20	83	4	52	53	4	4	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12643271--12643308	20	1.9	20	88	0	58	47	5	5	42	1.48
12643486--12643534	22	2.3	21	82	3	62	28	2	6	63	1.30
12643594--12643625	10	3.1	11	86	13	50	56	9	0	34	1.32
12643616--12643665	20	2.5	20	76	3	55	32	4	10	54	1.52
12643718--12643753	18	2.0	18	88	0	54	38	0	5	55	1.23
12644253--12644281	12	2.3	13	94	5	51	17	0	10	72	1.11
12645548--12645573	2	13.0	2	100	0	52	50	0	0	50	1.00
12645723--12645755	15	2.1	16	88	5	50	72	0	0	27	0.85
12649270--12649299	2	15.0	2	100	0	60	50	50	0	0	1.00
12651311--12651444	68	2.0	68	93	0	232	44	15	7	32	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109