genome.fa.s35.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  29  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5020735--5023372	70	37.9	70	71	11	876	53	12	14	19	1.72
5021828--5021981	71	2.2	69	78	5	166	59	12	11	16	1.60
5022057--5022123	17	3.9	17	71	9	55	55	13	10	20	1.67
5022049--5022125	34	2.3	34	86	4	102	58	11	10	19	1.61
5023110--5023296	71	2.6	71	76	10	184	51	13	16	18	1.77
5022979--5023368	212	1.9	209	80	3	469	54	12	14	18	1.71
5023431--5023591	69	2.3	69	81	3	180	51	10	16	21	1.74
5023420--5023733	35	9.0	35	75	9	248	51	11	16	20	1.75
5023432--5023717	70	4.1	69	77	9	274	51	11	16	20	1.75
5023760--5023842	34	2.4	34	82	7	96	51	15	12	20	1.75
5023654--5023820	85	2.0	85	86	0	235	51	11	15	21	1.74
5023744--5023842	35	2.9	34	80	7	101	53	15	12	19	1.72
5023739--5023895	69	2.2	69	75	6	156	50	11	16	21	1.76
5024023--5024509	35	13.9	35	72	8	240	54	11	13	19	1.70
5023988--5024264	70	3.9	70	71	10	206	52	12	15	19	1.74
5024147--5024298	72	2.1	70	85	2	196	57	12	9	19	1.62
5024147--5024507	104	3.4	104	72	11	297	56	11	11	19	1.66
5024272--5024493	69	3.2	68	73	12	193	54	12	13	19	1.69
5024511--5026670	35	61.7	35	70	12	506	51	11	16	20	1.75
5024419--5024601	89	2.1	88	79	4	199	51	14	15	17	1.76
5025287--5025604	71	4.5	70	77	5	259	49	8	18	23	1.75
5025271--5025599	106	3.1	103	78	7	306	49	8	18	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5025436--5025488	17	2.9	18	72	8	54	58	9	9	22	1.58
5025368--5025624	141	1.8	140	83	4	338	50	10	15	23	1.75
5026016--5026524	211	2.4	211	78	6	525	53	13	14	18	1.73
5026736--5069172	35	1208.4	35	70	11	6108	52	12	15	19	1.74
5027089--5027335	101	2.4	101	78	13	263	55	11	15	17	1.69
5026948--5027356	141	2.9	140	80	8	360	53	10	16	20	1.71
5027297--5030080	176	15.9	176	73	8	765	52	12	15	19	1.75
5026747--5069172	105	402.7	105	70	11	8221	52	12	15	19	1.74
5028844--5029939	141	7.8	136	73	12	421	51	12	16	19	1.76
5032225--5033003	71	11.1	71	74	8	266	51	11	15	21	1.75
5032396--5032458	19	3.5	19	72	12	60	65	11	7	15	1.47
5032434--5069172	70	522.9	70	71	8	7802	52	12	15	19	1.74
5032893--5033190	166	1.8	164	82	2	391	50	12	16	21	1.77
5033051--5069245	105	343.7	106	71	10	9278	52	12	15	19	1.74
5033899--5069102	141	251.2	140	70	11	3423	52	12	15	19	1.74
5035215--5035275	28	2.2	28	93	0	104	55	18	11	14	1.68
5035191--5035311	64	1.9	64	89	0	188	52	16	14	17	1.76
5036687--5036956	101	2.6	102	81	5	294	53	11	14	20	1.71
5037281--5037949	209	3.2	208	76	9	533	52	12	15	19	1.73
5038122--5038288	34	4.8	34	74	9	140	50	13	18	16	1.77
5039123--5039177	18	3.1	18	76	15	60	54	14	10	20	1.69
5039544--5039712	91	1.8	93	83	7	229	54	11	13	20	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5040172--5040233	32	2.0	31	87	9	92	56	6	17	19	1.62
5045604--5045666	29	2.2	29	82	5	74	47	9	20	22	1.78
5048720--5048784	30	2.2	30	83	2	78	55	7	16	20	1.65
5051143--5056775	176	32.1	176	71	9	761	52	11	15	19	1.74
5054145--5054487	104	3.3	101	71	9	250	53	12	14	19	1.73
5054725--5055244	212	2.5	213	78	6	547	52	12	16	18	1.75
5055803--5060496	106	44.8	106	68	14	311	52	11	15	19	1.73
5057062--5057262	101	2.0	102	85	4	273	54	11	13	19	1.70
5056988--5057363	207	1.8	207	81	5	474	53	11	14	20	1.70
5057510--5057585	38	2.0	39	84	7	102	51	10	14	23	1.73
5058751--5059414	246	2.7	246	77	4	572	53	11	15	19	1.72
5061910--5062312	136	3.0	136	77	6	404	51	10	16	20	1.74
5063016--5063473	71	6.6	65	72	16	212	51	11	15	20	1.74
5058570--5066400	106	74.3	108	69	13	708	52	12	15	19	1.74
5067062--5067304	82	3.0	82	88	3	337	53	9	16	20	1.70
5067112--5067258	47	3.4	46	66	21	127	55	10	14	19	1.67
5067227--5067282	19	3.1	19	71	10	53	53	8	12	25	1.67
5067226--5067276	17	2.8	19	73	8	52	49	9	15	25	1.75
5067438--5067684	133	1.9	134	81	5	304	53	9	17	19	1.70
5067405--5067719	169	1.9	168	81	4	384	53	9	16	20	1.71
5067331--5067985	239	2.7	239	76	7	518	53	10	16	19	1.71
5067920--5067972	15	3.1	17	79	20	65	52	11	9	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5067907--5067964	15	3.6	15	78	17	62	62	8	6	22	1.48
5067918--5067970	17	3.1	16	80	20	63	54	11	9	24	1.65
5068934--5069242	70	4.4	70	76	6	216	55	11	13	19	1.68
5072833--5102765	35	852.8	36	70	11	2431	52	12	15	19	1.75
5072834--5103351	70	435.9	70	69	12	5687	52	12	15	19	1.75
5072834--5122717	140	358.3	140	69	12	7820	51	12	16	19	1.75
5076628--5076900	106	2.6	104	77	5	271	49	12	17	20	1.79
5076984--5077081	30	3.1	30	77	14	90	53	13	14	19	1.73
5076984--5077103	64	1.9	64	89	3	188	51	13	15	19	1.76
5072904--5099466	176	151.9	174	69	11	2171	52	12	15	19	1.75
5072824--5122723	105	477.5	104	70	12	11503	51	12	16	19	1.75
5079824--5079980	80	2.0	79	94	1	278	49	15	15	19	1.80
5080171--5080232	29	2.1	30	81	3	72	51	12	11	24	1.72
5080149--5080478	100	3.3	100	81	5	324	52	13	14	18	1.75
5083385--5083654	107	2.5	107	79	5	287	52	12	15	18	1.73
5085925--5086375	104	4.3	105	74	9	249	54	13	15	17	1.71
5086911--5087303	209	1.8	213	79	9	453	51	15	15	18	1.77
5087892--5088088	100	2.0	99	80	5	218	54	12	14	18	1.71
5088030--5088387	136	2.6	136	78	6	328	52	13	16	17	1.75
5088731--5088814	28	2.9	29	91	7	134	53	11	10	23	1.69
5089692--5089765	31	2.3	31	83	4	85	54	13	14	17	1.72
5091270--5091589	172	1.9	173	79	8	375	49	13	16	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5093340--5093643	138	2.2	140	80	5	330	49	12	17	21	1.78
5094319--5094778	247	1.9	245	82	3	575	53	8	16	21	1.70
5095818--5095907	16	5.1	18	64	15	53	58	10	10	21	1.59
5097205--5097293	33	2.7	33	75	10	92	46	16	19	17	1.85
5097337--5097397	30	2.0	32	84	12	83	47	18	14	19	1.82
5097933--5098117	71	2.6	70	79	9	169	57	12	12	17	1.65
5099301--5099362	34	1.9	31	93	6	81	46	8	22	22	1.78
5100598--5100650	26	2.0	27	85	3	72	54	20	11	13	1.69
5100629--5100779	72	2.1	72	81	7	173	53	13	15	17	1.73
5102141--5102198	19	3.2	19	64	14	50	58	10	13	17	1.62
5102121--5102638	212	2.4	211	80	5	582	55	12	13	19	1.69
5102829--5103351	35	14.8	35	76	6	351	53	13	14	18	1.73
5102829--5103350	71	7.4	66	72	11	201	53	13	14	18	1.72
5103327--5103372	21	2.2	21	92	0	74	60	10	10	17	1.57
5102350--5103490	585	2.0	584	86	4	1602	53	12	14	18	1.73
5103415--5105263	35	51.8	35	67	16	353	50	13	16	19	1.77
5103836--5104327	71	7.0	70	73	13	271	49	12	17	20	1.78
5103950--5104215	142	1.9	142	80	10	321	50	12	17	19	1.77
5104402--5105263	35	24.2	36	72	16	360	51	12	17	18	1.76
5104683--5104768	42	2.0	42	84	4	111	54	6	17	20	1.66
5104812--5105638	176	4.8	176	73	13	527	52	13	15	18	1.75
5105312--5105635	35	9.2	35	72	7	154	53	13	14	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5105312--5105405	34	2.7	35	86	4	120	57	13	11	17	1.65
5105328--5107122	70	25.9	70	69	12	625	51	12	16	19	1.75
5105517--5105783	71	3.8	71	77	6	229	53	10	14	21	1.71
5105517--5105783	142	1.9	141	81	5	324	53	10	14	21	1.71
5105443--5106238	35	22.6	35	72	12	362	52	12	16	19	1.75
5106100--5106198	36	2.8	35	80	11	112	51	11	18	19	1.75
5106309--5106564	35	7.3	35	70	9	110	50	12	17	19	1.77
5106367--5107122	35	21.9	34	70	14	268	51	13	15	19	1.76
5106793--5107033	71	3.4	70	76	13	203	53	14	14	17	1.72
5107170--5107386	35	6.2	35	71	11	113	57	13	12	16	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109