genome.fa.s35.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  3  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310626--310716	17	5.5	15	71	21	51	48	0	2	49	1.13
310647--310732	36	2.4	37	79	13	90	52	1	1	45	1.16
310637--310750	51	2.2	52	80	10	128	49	1	0	48	1.17
310832--310868	17	2.2	17	95	0	65	45	2	0	51	1.15
311097--311150	28	2.0	27	88	3	81	51	3	1	42	1.30
311663--311689	14	1.9	14	100	0	54	48	7	0	44	1.31
316894--316944	12	4.3	11	80	14	57	31	0	0	68	0.90
316899--316949	18	2.7	18	84	6	57	29	0	0	70	0.87
316976--317056	32	2.6	31	86	7	110	58	4	2	34	1.33
318666--318701	18	2.1	17	94	5	63	5	33	13	47	1.67
318765--318844	40	2.0	40	97	0	151	15	11	27	46	1.79
325656--325702	16	3.0	15	76	17	51	42	25	2	29	1.67
325676--325718	15	2.8	16	78	7	52	44	23	6	25	1.78
330055--330096	15	2.8	15	78	10	50	78	2	4	14	1.01
334755--334804	17	2.9	17	87	0	73	64	0	2	34	1.05
348095--348139	14	3.0	16	71	15	51	46	0	0	53	1.00
348095--348176	30	2.8	29	80	15	98	50	1	0	48	1.08
353923--353992	35	2.0	35	91	2	115	30	17	15	37	1.91
354837--354869	2	16.5	2	100	0	66	48	0	0	51	1.00
360482--360523	19	2.2	19	83	8	50	40	2	2	54	1.26
370564--370591	14	2.0	14	100	0	56	50	7	14	28	1.69
374344--374386	21	2.1	20	83	12	52	13	0	23	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374422--374477	29	2.0	29	89	3	87	16	3	23	57	1.55
375373--375418	15	3.3	15	79	8	53	39	0	6	54	1.26
376272--376484	108	2.0	108	88	1	320	43	13	9	33	1.76
385723--385761	3	13.0	3	100	0	78	66	0	0	33	0.92
387136--387196	31	2.0	31	83	0	77	42	16	9	31	1.81
393368--393412	11	4.0	11	82	2	54	86	4	8	0	0.69
393379--393413	18	1.9	18	88	0	52	82	5	11	0	0.82
395163--395203	21	2.0	21	100	0	82	56	9	0	34	1.32
397844--397899	14	3.2	19	69	27	59	37	7	8	46	1.63
397822--397899	34	2.3	34	88	0	111	37	6	8	47	1.61
397842--397906	34	1.9	34	90	0	103	36	6	9	47	1.60
398475--398515	21	2.0	21	90	0	64	36	2	2	58	1.24
402886--402917	12	2.7	12	90	0	55	21	18	34	25	1.96
405653--405713	25	2.5	23	75	15	59	14	8	6	70	1.32
412997--413036	20	2.1	19	90	4	62	2	17	0	80	0.83
414762--414800	18	2.2	18	95	0	69	76	5	0	17	0.96
414766--414815	9	5.6	9	82	17	52	76	2	0	22	0.89
414767--414824	18	3.2	18	85	11	66	75	1	1	20	0.97
416095--416272	8	21.6	8	68	16	62	17	4	3	73	1.16
416084--416144	31	1.9	32	87	9	90	11	6	4	77	1.12
416126--416168	18	2.3	18	84	8	50	16	9	4	69	1.31
416164--416272	4	26.2	4	77	12	89	20	1	4	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416164--416272	27	4.0	26	74	20	89	20	1	4	73	1.10
416178--416274	49	1.9	51	83	8	128	18	2	6	73	1.14
416184--416286	49	2.1	49	80	7	111	21	0	5	71	1.12
416349--416374	13	2.0	13	100	0	52	61	0	0	38	0.96
416308--416425	60	2.0	60	89	3	184	50	9	7	33	1.63
421798--421831	7	4.7	7	88	3	50	85	2	0	11	0.71
426747--426887	16	9.1	16	68	25	65	30	0	3	65	1.15
426747--426890	52	2.8	51	76	11	141	31	0	3	64	1.15
427831--427910	34	2.3	35	78	10	92	15	0	7	77	0.98
427929--427986	6	9.7	6	78	14	50	15	3	0	81	0.83
427867--427985	11	10.7	11	68	18	52	18	3	1	76	1.01
427930--427986	29	2.0	29	85	0	78	15	3	0	80	0.84
427869--427990	13	8.8	13	69	22	63	18	3	1	76	1.01
427834--427998	12	13.5	12	67	19	51	16	3	2	78	0.99
428007--428361	119	3.0	120	81	11	451	45	7	12	34	1.71
428007--428361	60	6.0	58	83	9	407	45	7	12	34	1.71
428023--428361	179	1.9	178	89	4	522	44	7	13	34	1.71
432251--432291	19	2.2	19	86	0	55	82	2	9	4	0.89
433535--433964	80	5.3	80	90	6	649	21	18	22	37	1.94
433515--434001	41	12.0	40	89	7	652	21	19	21	37	1.94
433515--434001	121	4.0	120	92	4	755	21	19	21	37	1.94
434009--434075	1	67.0	1	75	0	62	88	11	0	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434009--434075	8	8.4	8	87	9	93	88	11	0	0	0.53
434008--434075	31	2.2	31	89	10	104	86	13	0	0	0.56
434009--434066	18	3.3	17	92	7	98	87	12	0	0	0.53
434371--434407	11	3.3	11	92	3	56	35	0	0	64	0.94
434378--434407	14	2.1	14	93	0	51	33	0	0	66	0.92
434816--434869	25	2.2	25	83	6	65	38	5	16	38	1.72
435374--435420	18	2.6	18	80	10	51	10	2	6	80	0.96
435458--435497	17	2.3	18	82	8	55	12	7	5	75	1.18
435415--435531	27	4.3	26	69	19	64	18	3	3	74	1.10
437775--437979	65	3.3	62	74	13	161	42	13	11	32	1.80
437906--438566	63	10.5	63	73	11	345	40	11	10	36	1.76
437772--438567	64	12.6	62	73	13	403	40	12	11	35	1.78
437877--438567	126	5.5	125	76	9	487	40	11	11	36	1.77
437923--438565	252	2.5	253	79	7	644	40	11	10	37	1.76
437892--438567	64	10.7	64	76	6	486	40	11	10	36	1.77
437913--438592	189	3.6	185	75	12	551	41	11	10	37	1.76
444244--444334	43	2.1	43	85	2	121	39	12	7	40	1.71
444862--444922	27	2.3	26	78	15	72	45	1	4	47	1.34
444896--444981	17	4.9	17	73	11	68	45	0	1	53	1.07
445730--445776	22	2.2	20	85	7	58	31	2	0	65	1.04
445729--445778	20	2.3	21	83	13	66	32	2	0	66	1.03
446769--446807	16	2.4	17	82	8	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446916--446943	2	14.0	2	100	0	56	50	0	0	50	1.00
447668--448019	167	2.1	166	80	7	385	43	11	4	41	1.60
451194--451261	25	2.7	25	75	11	66	44	4	8	42	1.55
451163--451294	61	2.2	59	84	2	174	42	3	10	43	1.57
451733--451770	18	2.1	18	95	0	67	47	5	5	42	1.48
452392--452454	26	2.3	27	81	13	67	58	3	9	28	1.45
454592--454616	13	1.9	13	100	0	50	32	0	24	44	1.54
458070--458104	6	5.7	6	89	3	52	0	11	14	74	1.08
462231--462255	13	1.9	13	100	0	50	56	4	0	40	1.18
465318--465342	2	12.5	2	100	0	50	48	0	52	0	1.00
465561--465815	126	2.0	126	100	0	510	24	16	15	43	1.86
467208--467233	3	8.7	3	100	0	52	0	0	65	34	0.93
468044--468078	4	8.8	4	93	0	61	48	22	2	25	1.64
468076--468106	2	15.5	2	93	0	53	54	0	0	45	0.99
468854--468936	40	2.1	39	84	2	103	31	14	16	37	1.89
483818--483848	16	1.9	16	100	0	62	58	19	0	22	1.40
493215--493257	19	2.3	18	84	8	50	41	2	0	55	1.12
494285--494359	37	2.1	36	82	2	87	57	12	9	21	1.62
494918--494949	12	2.6	13	85	14	50	59	0	0	40	0.97
497525--497561	14	2.4	16	86	8	51	21	8	0	70	1.13
499440--499573	58	2.3	58	82	8	157	29	8	8	52	1.61
499675--499707	13	2.4	14	90	5	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499570--499825	58	4.4	57	81	7	266	39	10	5	44	1.62
499872--499910	14	2.7	15	84	11	55	28	5	2	64	1.28
499734--499955	76	2.9	76	87	9	314	36	9	4	49	1.57
500009--500038	11	2.6	11	94	5	51	80	0	3	16	0.85
500059--500100	3	14.0	3	85	14	52	69	0	2	28	1.01
500063--500101	20	2.0	20	100	0	78	71	0	2	25	0.98
500843--500882	17	2.4	17	82	0	53	80	0	2	17	0.83
500851--500934	3	26.7	3	73	13	62	66	0	4	28	1.12
500862--500934	22	3.1	23	78	9	78	64	0	5	30	1.16
501043--501075	14	2.4	14	90	5	50	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109