Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  75  of  109  ( 12961 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14991029--14991081
25
2.0
26
85
7
72
45
0
3
50
1.19
14993859--14993922
20
3.0
21
80
15
62
65
1
0
32
1.02
14994129--14994158
15
2.1
14
93
6
51
23
10
26
40
1.86
14997300--14997334
15
2.3
15
85
0
52
48
2
0
48
1.16
15004570--15004604
14
2.5
14
90
0
52
45
8
11
34
1.71
15015792--15015816
6
4.2
6
100
0
50
16
0
20
64
1.30
15018091--15018126
19
1.9
18
88
5
54
58
8
27
5
1.50
15020306--15020401
48
2.0
48
97
0
183
48
12
15
22
1.79
15023377--15023407
15
2.1
15
93
0
53
38
12
19
29
1.89
15025629--15025669
17
2.4
17
88
12
57
68
7
7
17
1.36
15025629--15025670
19
2.3
18
84
8
59
69
7
7
16
1.34
15026408--15026592
48
3.8
48
80
5
212
27
14
7
50
1.69
15026389--15026612
97
2.3
97
80
2
261
26
13
7
51
1.68
15026576--15026691
37
3.1
36
75
10
108
23
12
5
59
1.52
15028746--15028784
17
2.3
17
90
0
60
30
0
23
46
1.53
15029306--15029391
11
7.6
11
72
23
72
24
1
24
50
1.57
15029331--15029369
20
2.1
19
90
9
62
20
0
25
53
1.45
15029306--15029391
45
2.0
44
86
9
122
24
1
24
50
1.57
15032133--15032189
30
1.9
30
92
0
96
47
15
10
26
1.78
15032132--15032179
20
2.4
20
76
13
53
47
12
10
29
1.74
15034009--15034089
41
2.0
41
92
0
135
33
3
17
45
1.66
15034309--15034360
19
2.8
19
85
2
61
42
30
5
21
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15034330--15034376
17
2.6
18
86
6
60
40
29
4
25
1.75
15034553--15034632
41
1.9
42
82
2
99
31
2
7
58
1.39
15036177--15036266
16
5.7
16
78
2
83
53
6
1
38
1.35
15036169--15036247
31
2.5
31
76
10
79
54
7
0
37
1.29
15049647--15049690
22
2.0
22
90
0
70
40
9
13
36
1.76
15052855--15052885
12
2.6
12
100
0
62
48
9
9
32
1.69
15057185--15057241
30
1.9
30
85
7
80
42
10
12
35
1.77
15057419--15057472
27
2.0
27
92
0
90
40
7
3
48
1.49
15057684--15058102
207
2.0
206
81
3
493
26
21
9
43
1.82
15061233--15061303
36
2.0
36
88
5
108
25
14
7
53
1.65
15061233--15061317
36
2.4
36
84
7
93
22
14
7
56
1.62
15061495--15061695
49
4.1
49
74
9
133
26
17
4
51
1.66
15061526--15061661
49
2.7
49
83
7
166
27
16
5
51
1.65
15064187--15064217
15
2.0
16
93
6
55
58
6
3
32
1.40
15064251--15064294
16
2.8
16
78
0
52
54
22
0
22
1.45
15064229--15064311
32
2.6
31
73
3
85
53
22
2
21
1.58
15065289--15065331
22
2.0
22
85
0
59
25
18
27
27
1.98
15071441--15071505
34
1.9
34
81
12
80
38
1
15
44
1.56
15072122--15072271
81
1.8
79
80
10
178
42
8
4
44
1.56
15073147--15073188
12
3.1
13
83
16
50
64
4
2
28
1.26
15087731--15088038
154
2.0
154
96
0
571
33
10
22
33
1.88
15095121--15095171
15
3.3
15
83
2
57
23
3
3
68
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15095173--15095216
17
2.4
19
85
7
56
61
0
2
36
1.09
15098008--15098052
2
22.5
2
100
0
90
48
0
0
51
1.00
15099168--15099231
4
16.0
4
93
0
56
46
9
3
40
1.52
15099426--15099602
74
2.4
73
78
9
187
45
7
6
39
1.60
15101677--15101704
2
14.0
2
100
0
56
50
0
0
50
1.00
15102145--15102186
20
2.1
20
100
0
84
33
19
11
35
1.88
15101916--15102436
267
2.0
267
99
0
1033
32
19
14
32
1.92
15111320--15111580
72
4.2
60
75
16
208
31
8
7
52
1.60
15111451--15111580
62
2.2
59
81
6
145
32
6
7
53
1.56
15111321--15111564
134
1.8
130
84
6
330
31
9
7
52
1.61
15112498--15112541
16
2.7
15
83
13
52
81
0
4
13
0.83
15112991--15113015
2
12.5
2
100
0
50
48
0
0
52
1.00
15113492--15113551
28
2.2
27
87
3
84
48
0
1
50
1.11
15114479--15114524
20
2.5
18
83
13
58
52
2
0
45
1.13
15115791--15115824
12
2.8
12
86
0
50
26
0
41
32
1.56
15118196--15118240
22
2.0
22
83
8
56
51
8
8
31
1.64
15118196--15118240
23
2.0
22
82
4
54
51
8
8
31
1.64
15124639--15124688
26
1.9
26
84
8
66
42
6
0
52
1.26
15125320--15125484
88
1.9
87
94
1
294
18
14
26
40
1.89
15126422--15126453
2
16.0
2
100
0
64
50
0
0
50
1.00
15139151--15139191
19
2.2
19
90
0
64
29
0
4
65
1.13
15139153--15139191
13
3.0
13
85
7
53
25
0
5
69
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15139797--15139854
20
3.0
19
90
5
82
34
3
10
51
1.53
15139903--15139941
21
1.9
21
94
5
71
35
7
10
46
1.67
15139996--15140176
24
7.4
24
73
19
133
31
5
11
51
1.61
15139929--15140131
101
2.0
102
84
2
264
32
7
10
49
1.65
15139901--15140131
101
2.3
101
80
5
256
32
7
10
49
1.65
15150650--15150733
4
21.5
4
70
20
54
72
5
1
20
1.12
15150650--15150733
7
10.8
8
70
20
54
72
5
1
20
1.12
15151445--15151484
21
1.9
21
89
0
62
52
5
5
37
1.45
15151675--15151707
17
2.0
16
94
5
57
66
3
0
30
1.06
15154891--15155009
62
1.9
62
87
0
175
39
13
8
38
1.75
15163254--15163285
15
2.1
16
94
5
57
68
0
15
15
1.21
15166031--15166083
27
2.0
25
85
7
70
66
3
3
26
1.26
15171318--15171414
49
1.9
51
86
12
139
47
7
4
41
1.50
15171545--15171597
3
17.7
3
100
0
106
32
0
0
67
0.91
15173566--15173614
24
2.0
24
96
0
89
30
14
14
40
1.85
15174911--15174958
3
16.0
3
95
0
87
64
0
35
0
0.94
15176334--15176374
3
13.7
3
100
0
82
65
0
0
34
0.93
15179675--15179732
28
2.1
28
90
0
89
22
13
12
51
1.74
15179749--15179773
6
4.2
6
100
0
50
84
0
16
0
0.63
15183918--15183966
12
4.0
12
86
5
71
69
2
0
28
1.00
15183915--15183966
25
2.2
23
89
6
77
69
1
0
28
0.99
15195934--15195989
22
2.6
21
78
10
60
71
5
5
17
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15200166--15200346
87
2.1
87
91
0
290
50
18
11
19
1.77
15200647--15200691
2
22.5
2
88
0
63
48
44
2
4
1.35
15200758--15200811
2
27.5
2
96
3
101
0
48
0
51
1.00
15200813--15200854
2
21.0
2
90
0
66
47
2
2
47
1.28
15216619--15216656
18
2.1
18
100
0
76
55
15
15
13
1.70
15217328--15217489
86
2.0
81
89
9
247
30
12
12
43
1.81
15217513--15217574
30
2.1
30
96
0
115
33
14
14
37
1.87
15218360--15218393
2
17.0
2
100
0
68
50
0
0
50
1.00
15222588--15223132
281
2.0
276
91
1
892
39
11
10
38
1.76
15226877--15226915
19
2.1
19
90
0
60
46
2
2
48
1.29
15227084--15227139
25
2.3
25
90
3
96
58
0
5
35
1.21
15227513--15227553
21
2.0
21
85
0
55
60
2
2
34
1.23
15239505--15239559
21
2.5
22
77
11
60
52
12
7
27
1.65
15241798--15241833
18
2.0
18
100
0
72
44
22
5
27
1.75
15242742--15242843
51
2.0
51
86
3
143
30
19
2
47
1.64
15246524--15246558
10
3.5
10
88
0
52
20
5
0
74
1.02
15246670--15246704
16
2.3
15
90
5
52
37
0
0
62
0.95
15247014--15247058
6
7.7
6
85
9
58
80
0
2
17
0.82
15247014--15247065
19
2.9
17
84
15
70
78
0
3
17
0.89
15248153--15248437
41
6.9
41
73
10
170
42
16
11
29
1.82
15248268--15248436
81
2.1
81
84
4
216
40
15
12
31
1.84
15248617--15248745
34
3.6
34
71
15
107
39
14
17
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15248631--15248708
40
2.0
40
84
5
104
38
15
14
32
1.87
15254822--15254863
20
2.0
21
90
4
68
2
21
4
71
1.16
15262335--15262368
8
4.1
8
88
3
50
55
0
0
44
0.99
15262334--15262366
16
2.0
16
94
5
57
54
0
0
45
0.99
15262402--15262433
16
1.9
17
93
6
57
81
0
6
12
0.87
15263246--15263283
16
2.3
17
86
13
53
15
2
0
81
0.80
15268295--15268354
29
2.1
29
80
0
66
53
3
3
40
1.34
15273004--15273044
21
2.0
21
85
0
55
43
17
9
29
1.80
15278278--15278306
13
2.3
13
94
5
51
34
0
0
65
0.93
15278738--15278785
23
2.1
22
84
3
60
60
6
2
31
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109