genome.fa.s35.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  103  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20847720--20847816	30	3.2	30	94	0	167	35	17	29	17	1.93
20848313--20848400	45	2.0	45	97	0	167	30	23	12	32	1.92
20851922--20852106	102	1.8	101	87	2	273	52	3	2	42	1.29
20852025--20852078	19	2.8	20	68	21	51	55	1	1	40	1.21
20853435--20853491	27	2.2	26	81	9	71	36	1	3	57	1.26
20853435--20853492	26	2.2	25	82	8	71	36	1	3	58	1.25
20853552--20853622	29	2.4	29	78	0	79	25	5	14	54	1.61
20853531--20853798	139	1.9	138	93	0	464	27	8	14	49	1.72
20854247--20854289	19	2.1	21	83	8	54	20	6	2	69	1.23
20857255--20857599	173	2.0	175	97	1	649	34	15	17	33	1.91
20866038--20866098	32	1.9	32	100	0	122	24	29	11	34	1.91
20870452--20870644	96	2.0	96	96	0	359	37	8	8	45	1.65
20870631--20870662	15	2.1	15	100	0	64	34	6	6	53	1.51
20870848--20870881	13	2.6	13	85	0	50	47	0	0	52	1.00
20882664--20882883	109	2.0	109	97	0	413	39	15	15	30	1.88
20883107--20883197	27	3.2	27	63	19	67	39	16	5	38	1.72
20883049--20883336	58	4.9	58	83	6	350	36	13	6	43	1.71
20883049--20883337	117	2.5	116	86	5	386	36	13	6	43	1.70
20885735--20885792	14	4.3	13	74	22	57	72	1	3	22	1.09
20885740--20885792	20	2.7	20	77	11	63	73	0	3	22	0.99
20885721--20885801	26	3.2	25	82	6	92	76	1	3	18	1.00
20886701--20886763	27	2.4	26	86	7	83	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20887255--20887280	1	26.0	1	100	0	52	0	0	0	100	0.00
20903456--20903526	17	3.9	18	69	23	51	50	0	1	47	1.09
20904541--20904586	23	1.9	25	86	8	69	52	0	0	47	1.00
20904630--20904723	26	3.6	26	74	9	93	59	4	0	36	1.17
20906340--20906383	20	2.2	20	96	4	81	47	2	0	50	1.13
20912207--20912236	12	2.5	12	88	0	51	36	0	3	60	1.14
20913490--20913534	22	2.0	22	82	0	54	62	0	2	35	1.08
20916512--20916555	19	2.3	20	80	11	56	63	0	0	36	0.95
20920159--20920234	38	2.0	38	94	0	134	31	13	21	34	1.91
20926400--20926479	41	2.0	41	82	5	99	47	5	0	47	1.24
20927703--20927760	22	2.6	22	86	5	82	51	0	3	44	1.18
20934798--20934824	6	4.5	6	100	0	54	0	18	33	48	1.49
20939486--20939540	21	2.5	23	79	8	69	40	3	9	47	1.53
20941781--20941832	22	2.3	23	83	12	72	53	3	3	38	1.37
20943150--20943185	7	4.9	7	87	12	54	58	0	0	41	0.98
20943150--20943196	16	3.1	16	82	17	64	57	0	0	42	0.98
20945869--20945920	23	2.2	24	80	10	63	55	5	3	34	1.42
20950189--20950231	15	2.9	15	78	0	59	16	39	0	44	1.48
20954552--20954625	29	2.6	28	80	4	78	52	4	0	43	1.20
20955148--20955193	14	3.0	17	73	26	57	50	4	0	45	1.21
20961902--20961950	14	3.5	14	83	10	73	40	0	0	59	0.98
20963232--20963284	25	2.2	24	83	10	63	60	3	30	5	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20991755--20991828	35	2.2	33	78	9	78	14	1	17	66	1.33
20998387--20998420	4	8.8	4	93	6	61	50	23	0	26	1.50
21005095--21005141	23	2.0	23	100	0	94	25	19	17	38	1.92
21011921--21011995	29	2.7	29	78	12	77	46	4	1	48	1.29
21014337--21014415	32	2.5	33	79	8	92	46	0	2	50	1.14
21019405--21019445	14	3.1	14	80	19	52	58	7	0	34	1.26
21020744--21020786	21	2.0	21	82	8	52	69	6	4	18	1.29
21021245--21021302	21	2.7	23	77	20	63	32	0	3	63	1.11
21021256--21021306	21	2.6	19	85	11	68	33	0	1	64	1.05
21022266--21022295	16	1.9	16	93	6	53	33	0	3	63	1.11
21022236--21022289	23	2.2	25	90	6	85	29	0	1	68	1.00
21026085--21026118	2	17.0	2	100	0	68	50	0	0	50	1.00
21030497--21030549	23	2.3	23	76	0	61	52	3	0	43	1.19
21033435--21033483	2	24.5	2	100	0	98	51	0	48	0	1.00
21035643--21035675	8	4.1	8	96	0	57	30	0	0	69	0.88
21036660--21036700	18	2.2	18	86	4	55	31	4	4	58	1.40
21036739--21036767	11	2.5	12	94	5	51	86	0	0	13	0.58
21041081--21041147	18	3.6	18	76	6	62	49	0	0	50	1.00
21048945--21048970	2	13.0	2	100	0	52	50	0	0	50	1.00
21051015--21051194	99	1.8	99	95	0	324	36	20	21	21	1.96
21051669--21051727	28	2.1	28	100	0	118	27	25	22	25	2.00
21051138--21051842	265	2.7	264	90	4	1055	28	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21052634--21052722	43	2.0	44	84	2	117	37	5	4	52	1.45
21054154--21054199	22	2.1	22	88	4	67	41	2	0	56	1.11
21054208--21054261	11	4.5	11	77	13	54	31	0	0	68	0.90
21054160--21054257	40	2.5	40	80	6	92	34	1	0	64	1.01
21054201--21054249	24	2.0	24	88	0	71	30	0	0	69	0.89
21054218--21054257	15	2.8	14	85	14	55	30	0	0	70	0.88
21054207--21054276	24	2.9	24	83	8	79	32	1	0	65	1.01
21054207--21054267	13	5.0	12	73	15	54	31	1	0	67	1.01
21060117--21060149	3	11.3	3	87	6	50	0	33	0	66	0.92
21063834--21063902	18	3.7	18	75	7	66	47	0	0	52	1.00
21067921--21067990	33	2.1	33	100	0	140	37	0	17	45	1.48
21071722--21072421	135	5.2	135	89	1	1035	35	22	21	20	1.96
21074912--21074944	2	17.0	2	93	6	59	51	0	0	48	1.00
21076041--21076068	6	4.7	6	100	0	56	53	0	0	46	1.00
21076028--21076078	18	2.9	18	74	5	52	54	0	0	45	0.99
21076449--21076571	18	7.1	18	72	10	112	27	4	31	36	1.76
21076449--21076492	15	2.7	15	82	10	52	29	4	27	38	1.76
21076921--21076972	27	1.9	27	88	7	79	30	38	5	25	1.79
21079971--21080058	27	3.4	27	74	17	105	30	9	6	53	1.58
21079963--21080072	50	2.2	50	100	0	220	35	10	5	49	1.60
21079963--21080072	26	4.4	23	70	21	80	35	10	5	49	1.60
21080562--21081204	57	10.7	59	85	11	821	33	13	7	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21080562--21081204	117	5.4	117	89	7	890	33	13	7	44	1.72
21081290--21081348	12	4.9	11	80	12	55	81	5	1	11	0.93
21081284--21081350	8	9.4	7	77	19	52	82	4	1	11	0.89
21081284--21081332	20	2.5	19	84	12	64	81	4	2	12	0.91
21081729--21081773	19	2.4	19	80	0	54	20	28	28	22	1.98
21082468--21082525	20	2.8	20	94	2	98	18	31	31	18	1.96
21083122--21083159	20	2.0	20	89	5	60	60	5	0	34	1.19
21086684--21086708	2	12.5	2	100	0	50	48	0	0	52	1.00
21088214--21088243	2	15.0	2	100	0	60	50	0	0	50	1.00
21088362--21088391	9	3.4	9	90	9	53	43	10	0	46	1.37
21092503--21092542	3	12.7	3	84	10	53	30	2	2	65	1.19
21092502--21092543	20	2.2	19	91	4	66	28	2	2	66	1.16
21092502--21092559	26	2.2	27	78	9	66	24	3	1	70	1.12
21092712--21093178	58	7.8	57	74	17	335	47	5	11	36	1.62
21092712--21093170	121	3.8	123	76	14	392	46	5	11	36	1.63
21093079--21093130	18	2.8	18	76	5	50	46	1	11	40	1.51
21103690--21103796	52	2.1	52	85	3	144	50	9	18	21	1.75
21104658--21104881	85	2.6	85	81	8	251	21	17	13	46	1.83
21105795--21105841	25	2.0	23	87	8	67	27	2	0	70	0.99
21105796--21105859	31	2.1	31	87	0	92	25	4	0	70	1.06
21105795--21105855	28	2.2	28	88	2	88	24	4	0	70	1.07
21105942--21106534	57	9.8	59	73	13	363	47	6	11	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21106005--21106426	121	3.4	121	82	4	447	47	6	10	35	1.63
21110765--21111329	135	4.2	135	90	0	808	35	21	21	21	1.96
21114764--21114814	25	2.0	25	96	0	93	47	13	0	39	1.43
21115297--21115338	2	21.0	2	95	0	75	47	0	0	52	1.00
21121976--21122040	33	2.0	33	96	0	121	43	9	18	29	1.81
21121841--21122150	168	1.8	168	89	0	485	35	21	20	22	1.96
21126401--21126561	61	2.7	57	78	12	173	37	11	4	45	1.63
21126575--21126636	6	10.8	6	74	19	53	79	1	1	17	0.90
21126578--21126635	10	5.9	10	80	9	66	79	1	1	17	0.90
21126578--21126630	19	2.7	20	82	8	65	81	1	1	15	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109