genome.fa.s35.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  27  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4677472--4677515	19	2.2	20	88	11	65	65	0	2	31	1.05
4677472--4677521	18	2.8	18	77	14	50	62	0	2	36	1.07
4679222--4679400	95	1.9	96	80	8	213	43	6	8	42	1.60
4679523--4679579	29	2.0	29	82	6	71	63	10	0	26	1.27
4679587--4679629	21	2.0	23	86	9	63	65	4	0	30	1.13
4680672--4680752	4	20.8	4	74	12	62	72	1	4	20	1.10
4680672--4680752	35	2.3	34	79	12	85	72	1	4	20	1.10
4680688--4680752	23	2.9	23	84	8	80	72	1	6	20	1.14
4685734--4685794	21	2.9	21	71	9	52	34	6	49	9	1.62
4690940--4691034	28	3.3	29	74	23	87	65	3	3	28	1.23
4691177--4691223	20	2.3	20	82	7	60	17	2	6	74	1.12
4691258--4691316	18	3.3	18	78	0	64	38	1	5	54	1.33
4691276--4691368	19	4.7	19	74	11	62	36	0	5	58	1.21
4691323--4691372	19	2.6	19	90	3	73	32	0	4	64	1.12
4691527--4691589	20	3.2	18	76	14	63	39	1	0	58	1.07
4691554--4691579	12	2.2	12	100	0	52	38	0	0	61	0.96
4697594--4697636	21	2.0	22	86	4	61	44	0	0	55	0.99
4701109--4701161	26	2.0	26	100	0	106	56	11	7	24	1.60
4702374--4702402	14	2.1	14	100	0	58	24	0	20	55	1.44
4703053--4703093	4	10.2	4	100	0	82	24	26	0	48	1.51
4711624--4711669	24	1.9	24	86	8	67	76	8	13	2	1.11
4711628--4711676	18	2.8	18	78	3	55	77	6	12	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4713363--4713424	20	3.0	20	72	19	65	20	4	3	70	1.19
4714474--4714499	8	3.2	8	100	0	52	23	23	30	23	1.99
4715802--4716080	115	2.4	114	85	3	346	45	7	10	36	1.66
4715802--4716080	57	4.9	58	85	3	350	45	7	10	36	1.66
4722297--4722383	35	2.5	35	90	0	138	35	9	13	41	1.77
4722296--4722411	35	3.4	34	82	4	119	34	10	15	39	1.81
4722564--4722810	48	5.1	48	68	18	163	25	14	19	40	1.90
4722482--4722886	147	2.8	147	88	1	609	24	14	20	39	1.91
4722938--4723156	49	4.4	49	79	11	205	27	11	20	40	1.86
4723373--4723416	13	3.2	13	83	6	52	81	9	6	2	0.94
4723686--4723734	19	2.5	20	81	15	57	69	10	8	12	1.37
4724245--4724318	30	2.5	30	79	0	76	31	36	18	13	1.90
4724728--4724769	20	2.0	23	86	13	63	61	0	7	30	1.22
4726156--4726213	25	2.3	25	91	5	91	46	0	0	53	1.00
4726143--4726239	25	4.2	22	78	17	83	48	0	0	51	1.00
4726223--4726252	14	2.2	14	94	5	53	46	0	0	53	1.00
4726240--4726277	19	2.0	20	89	5	60	55	0	0	44	0.99
4730604--4730640	18	2.1	18	89	0	56	27	0	0	72	0.84
4731288--4731353	28	2.3	28	84	2	78	39	1	1	57	1.17
4731802--4731848	13	3.5	13	77	11	58	31	0	0	68	0.90
4731802--4731856	28	2.0	28	100	0	110	34	0	0	65	0.93
4742801--4743240	58	7.7	58	84	9	491	36	12	6	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4743109--4743202	28	3.3	29	65	27	76	37	11	5	45	1.63
4743257--4743294	10	4.1	9	87	12	51	78	0	0	21	0.74
4743251--4743295	15	3.1	15	84	12	58	75	0	2	22	0.91
4743256--4743289	5	6.8	5	87	12	52	79	0	0	20	0.73
4743844--4743875	12	2.4	14	80	20	50	62	6	0	31	1.20
4743850--4743875	12	2.2	12	100	0	52	61	7	0	30	1.24
4744168--4744208	17	2.5	17	88	4	57	70	0	7	21	1.11
4744195--4744335	6	20.4	7	73	17	77	70	2	4	23	1.16
4744165--4744304	37	3.7	39	75	17	113	69	1	4	25	1.15
4744238--4744326	34	2.6	35	79	12	103	70	1	2	25	1.05
4744240--4744325	37	2.2	37	84	10	102	72	1	2	24	1.04
4744240--4744336	41	2.3	41	81	13	108	72	1	3	23	1.06
4744619--4744803	36	4.5	42	82	10	197	37	19	16	26	1.92
4744574--4744803	44	5.5	41	78	11	218	38	19	16	26	1.92
4744777--4744828	25	2.1	25	88	0	77	32	23	17	26	1.96
4744802--4745142	42	8.2	41	82	6	391	37	20	14	26	1.92
4745441--4745525	43	2.0	42	86	6	118	35	15	10	38	1.82
4745704--4745764	22	2.8	21	82	5	77	32	19	8	39	1.81
4746907--4746952	22	2.2	22	84	7	60	10	15	0	73	1.08
4746929--4746992	33	1.9	34	87	6	96	9	25	0	65	1.22
4750928--4751246	58	5.7	59	74	18	211	36	12	5	45	1.67
4750997--4751205	104	2.0	104	88	7	309	35	12	5	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4751055--4751147	46	2.0	46	91	0	150	34	13	3	48	1.59
4750937--4751246	162	1.9	161	83	9	396	35	12	5	45	1.67
4751315--4751348	4	9.0	4	87	12	54	76	0	0	23	0.79
4752186--4752273	15	6.1	15	76	11	69	70	1	3	25	1.10
4752204--4752269	13	4.7	13	75	17	60	72	1	3	22	1.06
4752186--4752254	31	2.3	29	85	9	86	68	1	2	27	1.13
4758850--4758898	8	6.0	8	97	2	89	24	2	0	73	0.94
4762086--4762125	2	20.0	2	100	0	80	50	0	0	50	1.00
4762938--4762975	2	19.0	2	100	0	76	50	0	0	50	1.00
4764965--4765009	11	3.8	11	81	16	54	77	2	2	17	0.97
4766232--4766272	8	5.2	8	91	2	66	78	2	0	19	0.87
4766232--4766285	15	3.5	15	85	5	72	75	3	1	18	1.03
4767742--4767771	15	1.9	16	93	6	53	0	13	0	86	0.57
4773801--4773832	17	1.9	16	93	6	55	21	0	53	25	1.46
4777842--4777884	13	3.4	13	83	6	52	20	0	6	72	1.08
4778484--4778520	20	1.9	18	89	10	56	32	8	10	48	1.67
4782369--4782819	58	7.7	59	85	8	525	36	12	6	43	1.69
4782371--4782818	118	3.9	114	83	7	503	36	12	6	43	1.69
4782369--4782819	176	2.6	174	85	6	565	36	12	6	43	1.69
4782835--4782878	5	9.2	5	81	18	58	81	0	0	18	0.68
4782835--4782859	13	1.9	13	100	0	50	80	0	0	20	0.72
4782835--4782883	18	2.9	18	82	14	68	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4782835--4782878	11	4.6	10	81	18	58	81	0	0	18	0.68
4782902--4782927	4	6.5	4	100	0	52	76	0	0	23	0.78
4783435--4783459	13	1.9	13	100	0	50	68	8	0	24	1.16
4783754--4783794	17	2.5	17	88	4	57	70	0	7	21	1.11
4783772--4783888	40	3.0	38	78	13	114	70	1	4	23	1.15
4783824--4783872	15	3.3	15	80	8	57	73	0	2	24	0.94
4783753--4783907	37	4.4	33	72	18	91	69	1	4	23	1.17
4783789--4783912	37	3.3	36	81	13	117	70	2	3	24	1.14
4783850--4783928	6	12.7	6	71	11	52	73	2	2	21	1.07
4784120--4784154	11	3.2	11	87	0	52	2	0	11	85	0.69
4784119--4784154	17	2.1	17	89	0	54	2	0	11	86	0.68
4784170--4784636	42	11.1	41	81	9	451	37	19	15	26	1.92
4784935--4785019	43	2.0	42	88	6	127	36	15	9	38	1.80
4785198--4785258	22	2.8	21	82	5	77	32	19	8	39	1.81
4786399--4786441	21	2.1	21	86	4	61	9	13	0	76	1.01
4790414--4790569	59	2.7	59	78	10	185	36	12	6	44	1.69
4790541--4790631	45	2.0	45	93	0	155	35	13	3	48	1.58
4790724--4790762	17	2.3	17	91	8	62	71	0	0	28	0.86
4790727--4790765	14	2.8	13	88	7	51	71	0	0	28	0.86
4791603--4791647	23	2.0	23	86	8	65	68	0	4	26	1.08
4791605--4791682	31	2.5	30	80	10	86	67	1	2	28	1.11
4791673--4791703	6	5.2	6	92	0	53	80	0	3	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4792555--4792594	19	2.1	19	86	9	55	27	25	10	37	1.88
4798259--4798291	8	4.0	8	96	4	57	24	3	0	72	0.98
4802300--4802325	2	13.0	2	100	0	52	50	0	0	50	1.00
4804301--4804352	23	2.2	22	83	13	59	76	1	1	19	0.97
4805557--4805589	8	4.2	8	92	3	50	78	3	0	18	0.87
4805557--4805596	16	2.5	15	84	11	53	77	5	0	17	0.94
4805823--4805989	39	4.3	38	82	4	154	43	18	13	24	1.87
4807060--4807089	15	1.9	16	93	6	53	0	13	0	86	0.57
4817154--4817184	14	2.2	14	94	0	53	19	0	3	77	0.90
4817795--4817831	20	1.9	18	89	10	56	32	8	10	48	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109