genome.fa.s35.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  22  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718711--3718753	16	2.7	16	96	0	77	30	55	2	11	1.48
3719785--3719834	3	18.0	3	80	12	54	68	0	4	28	1.08
3719783--3719834	21	2.5	21	81	3	61	67	0	3	28	1.08
3719784--3719830	24	2.0	24	86	0	67	70	0	4	25	1.05
3720116--3720300	28	6.4	28	79	11	151	49	28	0	21	1.53
3720169--3720276	14	7.6	14	67	15	53	50	29	0	19	1.54
3720125--3720273	58	2.6	58	84	8	205	49	30	0	19	1.53
3720168--3720336	86	2.0	86	83	4	216	50	27	0	21	1.53
3720240--3720293	21	2.5	22	79	11	58	51	31	0	16	1.45
3720168--3720371	86	2.4	85	77	11	200	50	26	0	22	1.53
3720733--3721017	140	2.0	140	94	0	498	31	9	8	51	1.63
3722602--3722635	7	4.7	7	85	7	50	85	2	2	8	0.80
3722977--3723034	24	2.5	23	83	5	71	77	5	13	3	1.07
3724028--3724232	86	2.4	87	82	0	241	34	17	11	36	1.86
3724619--3724728	3	37.7	3	71	13	52	29	0	6	63	1.25
3724705--3724739	17	2.1	17	89	10	54	20	2	0	77	0.90
3725503--3725549	13	3.5	14	82	5	53	12	2	2	82	0.84
3725504--3725546	19	2.3	19	91	0	68	11	2	2	83	0.83
3725512--3725581	23	3.2	22	70	18	58	21	2	1	74	1.03
3725748--3725795	16	3.1	15	80	11	53	52	16	0	31	1.45
3729777--3729879	32	3.2	32	81	6	122	37	0	6	55	1.27
3729791--3729895	32	3.3	32	80	4	86	38	0	6	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3730291--3730332	18	2.4	18	96	4	77	59	9	0	30	1.29
3732149--3732181	14	2.2	16	89	10	52	66	6	0	27	1.15
3732941--3732988	21	2.3	22	79	17	57	58	0	2	39	1.10
3733545--3733721	89	2.0	89	98	0	345	23	11	15	48	1.78
3735296--3735342	16	3.1	16	82	11	55	31	0	4	63	1.13
3741393--3741457	32	2.0	32	85	5	87	30	15	24	29	1.96
3741926--3742057	65	2.0	65	95	0	237	16	10	21	51	1.74
3750300--3750338	19	2.1	19	90	0	60	46	7	12	33	1.71
3750775--3750887	32	3.4	32	68	19	88	63	4	4	27	1.32
3750779--3750894	16	7.1	16	70	11	56	64	4	4	26	1.31
3751933--3751981	21	2.3	21	89	0	71	44	16	24	14	1.84
3753051--3753092	20	2.1	20	86	8	59	45	4	7	42	1.52
3753078--3753115	18	2.2	17	86	13	51	47	0	0	52	1.00
3755893--3755920	10	2.8	10	100	0	56	71	0	0	28	0.86
3756614--3756646	3	11.0	3	100	0	66	33	0	0	66	0.92
3756656--3756693	17	2.5	15	80	19	51	0	31	2	65	1.06
3757775--3757822	19	2.5	19	83	6	62	14	2	4	79	0.98
3758130--3758163	17	2.0	18	88	11	54	61	0	2	35	1.11
3769654--3769706	27	1.9	27	81	11	63	11	5	11	71	1.29
3771207--3771249	22	2.0	22	90	0	68	27	0	23	48	1.51
3774512--3774553	22	2.0	20	86	9	57	50	0	4	45	1.23
3774977--3775021	18	2.5	17	82	7	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3774997--3775021	13	1.9	13	100	0	50	48	0	0	52	1.00
3775137--3775230	29	3.2	29	76	3	89	18	10	15	55	1.69
3775645--3775680	5	6.8	5	96	3	54	44	0	0	55	0.99
3775690--3775731	22	1.9	22	95	0	75	38	7	4	50	1.51
3779332--3779427	49	2.0	49	95	0	174	26	23	12	37	1.91
3782359--3782411	22	2.4	22	93	6	90	50	0	0	49	1.00
3782825--3782882	23	2.5	24	82	5	73	24	3	12	60	1.47
3785981--3786030	24	2.1	24	85	3	66	80	2	14	4	0.95
3796360--3796420	12	4.7	13	77	18	65	65	0	0	34	0.93
3799728--3799757	15	2.0	15	100	0	60	20	13	20	46	1.83
3802055--3802103	25	2.0	25	84	4	64	26	12	24	36	1.91
3802896--3802933	2	19.5	2	94	5	69	47	0	0	52	1.00
3804418--3804456	11	3.5	11	93	6	62	74	0	0	25	0.82
3810901--3810928	10	2.8	10	100	0	56	42	50	0	7	1.30
3811350--3811408	29	2.0	29	83	0	73	18	5	8	67	1.35
3813186--3813706	59	8.7	58	85	8	683	33	13	7	44	1.72
3813186--3813707	117	4.4	118	87	9	731	33	13	7	45	1.72
3813785--3813827	16	2.8	16	86	13	63	83	0	2	13	0.74
3814123--3814161	20	2.0	20	94	0	69	23	15	25	35	1.94
3814301--3814348	25	1.9	25	87	8	71	41	18	8	31	1.80
3816467--3816507	21	2.0	21	90	9	66	68	0	2	29	1.03
3816705--3816745	16	2.4	17	88	8	57	75	0	4	19	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3820893--3820952	29	2.1	29	90	0	93	41	18	8	31	1.80
3822544--3822590	18	2.6	18	100	0	94	59	4	10	25	1.49
3826392--3826432	19	2.2	19	100	0	82	36	24	4	34	1.77
3827198--3827275	27	2.9	27	83	7	95	30	7	25	35	1.84
3845089--3845148	23	2.7	21	78	14	66	71	0	0	28	0.86
3845090--3845136	11	4.3	11	81	7	51	68	0	0	31	0.90
3848316--3848359	22	2.0	22	81	0	52	38	0	4	56	1.20
3850056--3850094	19	2.0	19	90	5	60	28	0	0	71	0.86
3851254--3851282	2	14.5	2	100	0	58	48	0	0	51	1.00
3851676--3851709	15	2.3	15	90	10	52	35	0	26	38	1.57
3852064--3852090	7	3.9	7	100	0	54	29	0	11	59	1.32
3853664--3853702	8	4.9	8	80	0	51	79	0	20	0	0.73
3853664--3853702	16	2.4	16	95	0	69	79	0	20	0	0.73
3859913--3859946	14	2.4	14	90	0	50	61	20	0	17	1.34
3859922--3859950	14	2.1	14	100	0	58	55	20	0	24	1.44
3862821--3862851	15	2.1	15	100	0	62	25	19	6	48	1.72
3863992--3864347	182	2.0	178	96	3	660	42	9	8	39	1.68
3870337--3870709	186	2.0	186	89	1	577	28	11	18	42	1.84
3875059--3875130	35	2.1	35	94	0	126	43	9	26	20	1.83
3877767--3877791	2	12.5	2	100	0	50	0	48	0	52	1.00
3877791--3877817	2	13.5	2	100	0	54	48	0	0	51	1.00
3885476--3885502	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886306--3886345	18	2.2	18	86	0	53	27	2	0	70	1.01
3886793--3886833	20	2.0	20	85	4	55	48	2	12	36	1.54
3887165--3887248	41	2.1	40	86	4	116	51	2	7	39	1.42
3897655--3897906	126	2.0	126	97	0	477	31	17	20	30	1.95
3903161--3903205	19	2.4	19	96	0	81	13	42	35	8	1.75
3904888--3904945	22	2.7	22	97	2	109	60	3	0	36	1.14
3913220--3913257	11	3.5	11	85	7	51	0	10	10	78	0.95
3916896--3916949	16	3.7	15	76	19	60	35	3	3	57	1.34
3916900--3916953	28	2.0	27	88	3	81	37	3	3	55	1.35
3917273--3917309	19	1.9	19	88	0	56	21	0	10	67	1.21
3917322--3917389	26	2.7	26	86	4	95	50	1	1	47	1.19
3917408--3917459	18	2.9	18	78	13	54	55	1	0	42	1.10
3917487--3917657	23	7.4	23	74	11	145	42	1	1	54	1.18
3917490--3917549	31	2.0	30	84	9	79	43	3	1	51	1.28
3917504--3917638	15	9.2	14	72	24	86	42	1	1	54	1.18
3917538--3917671	22	6.2	21	75	13	103	40	0	2	57	1.11
3917487--3917671	18	10.3	18	72	19	104	41	1	2	55	1.19
3917492--3917682	45	4.2	44	68	25	53	42	1	2	53	1.19
3920350--3920383	10	3.3	10	87	4	50	70	2	0	26	1.01
3920700--3920732	10	3.5	10	88	12	52	66	0	0	33	0.92
3920750--3920825	38	2.1	36	82	9	91	52	3	2	40	1.34
3930362--3930390	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3934448--3934491	19	2.5	18	82	13	56	43	0	0	56	0.99
3934454--3934498	22	2.0	22	83	8	56	44	0	2	53	1.13
3934447--3934500	16	3.2	16	76	21	56	42	0	1	55	1.10
3934448--3934516	28	2.4	29	79	15	74	46	0	1	52	1.09
3943697--3943739	22	2.0	21	86	4	59	34	11	9	44	1.73
3943881--3943930	26	2.0	25	88	7	75	20	22	8	50	1.74
3948733--3948771	2	19.5	2	100	0	78	48	0	0	51	1.00
3952728--3952769	7	5.7	7	88	8	57	80	0	19	0	0.70
3952728--3952769	8	5.6	7	88	11	57	80	0	19	0	0.70
3952728--3952769	15	2.8	15	86	13	68	80	0	19	0	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109