genome.fa.s35.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  38  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5837262--5837295	2	17.0	2	100	0	68	0	50	0	50	1.00
5838659--5838703	15	2.8	17	74	22	51	37	0	0	62	0.96
5839027--5839072	20	2.3	20	84	0	56	15	21	15	47	1.81
5839379--5839415	12	3.2	12	82	17	51	24	0	0	75	0.80
5839601--5839677	8	9.5	8	85	12	104	76	1	0	22	0.86
5839606--5839677	17	4.4	17	91	5	121	76	1	0	22	0.86
5839601--5839677	33	2.3	32	91	6	127	76	1	0	22	0.86
5840018--5840114	49	2.0	48	83	6	122	56	6	8	28	1.53
5841164--5841272	50	2.2	50	89	0	164	24	18	4	52	1.64
5850737--5850790	17	2.9	17	78	10	54	79	1	12	5	0.98
5851793--5852200	43	9.6	43	82	5	429	24	10	20	45	1.82
5852807--5852838	14	2.2	14	94	5	55	18	0	12	68	1.20
5853503--5853543	8	5.0	8	88	5	64	75	2	0	21	0.92
5853502--5853543	17	2.5	17	88	3	68	76	2	0	21	0.90
5853568--5853629	26	2.5	24	78	7	61	43	6	14	35	1.71
5855846--5855922	12	6.5	11	72	20	50	54	0	1	44	1.08
5855893--5855942	21	2.4	22	83	6	59	56	0	6	38	1.24
5856833--5856868	2	18.5	2	88	5	56	50	2	0	47	1.15
5858190--5858230	22	1.9	22	90	5	66	36	0	0	63	0.95
5864220--5864289	29	2.4	29	80	4	88	64	1	1	32	1.11
5865590--5865631	19	2.2	20	83	12	52	52	4	0	42	1.22
5865552--5865615	27	2.3	28	82	15	80	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5869348--5869393	23	2.0	23	95	0	83	41	28	4	26	1.74
5873029--5873798	371	2.1	368	81	3	904	30	20	27	21	1.98
5873713--5873904	97	2.0	97	86	4	271	35	19	25	19	1.96
5873826--5873966	75	1.9	75	86	0	201	37	19	27	14	1.92
5874110--5874298	95	2.0	97	90	2	301	32	21	25	20	1.97
5877746--5877829	41	2.0	41	84	8	109	34	14	17	33	1.90
5881478--5881507	6	5.0	6	100	0	60	16	0	33	50	1.46
5881726--5881785	29	2.1	29	100	0	120	10	15	10	65	1.48
5886088--5886136	24	2.0	25	84	4	64	38	8	4	48	1.52
5885839--5886180	185	1.8	186	83	6	462	38	10	5	45	1.63
5887057--5887100	15	3.1	14	83	9	54	68	0	4	27	1.09
5887066--5887148	9	9.0	9	77	13	55	72	2	2	22	1.08
5887081--5887148	13	5.3	13	78	15	54	75	2	1	20	1.02
5887070--5887148	4	19.2	4	73	19	56	73	2	2	21	1.07
5887067--5887144	23	3.2	24	74	16	72	73	2	2	21	1.08
5896409--5896442	14	2.4	14	81	18	52	58	2	0	38	1.13
5897866--5897907	8	5.1	8	82	5	57	35	0	0	64	0.94
5897860--5897905	13	3.6	13	77	16	60	34	0	0	65	0.93
5897857--5897905	25	1.9	26	91	4	82	34	0	0	65	0.93
5898427--5898454	14	2.0	14	100	0	56	28	0	7	64	1.20
5899728--5899759	3	10.7	3	100	0	64	65	0	0	34	0.93
5899760--5899806	3	16.7	3	82	12	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5901035--5901065	2	15.5	2	100	0	62	48	0	0	51	1.00
5905563--5905600	19	2.0	19	89	0	58	84	0	10	5	0.77
5906892--5906917	10	2.6	10	100	0	52	0	7	0	92	0.39
5908137--5908195	29	2.1	28	84	9	75	45	6	1	45	1.40
5915733--5915778	21	2.2	21	84	7	58	71	2	2	23	1.08
5916603--5916628	10	2.6	10	100	0	52	46	0	0	53	1.00
5919822--5919907	41	2.1	41	100	0	172	32	2	9	55	1.44
5927956--5928110	49	3.2	49	80	5	154	29	10	18	41	1.84
5929439--5929482	21	2.1	21	83	8	54	75	2	2	20	1.03
5931465--5931533	29	2.3	30	77	5	77	44	5	8	40	1.59
5931634--5931715	29	2.8	29	83	3	103	43	8	2	45	1.47
5933032--5933067	2	18.0	2	94	0	63	47	0	0	52	1.00
5936389--5936452	31	2.1	31	82	5	76	39	1	4	54	1.31
5939440--5939506	17	4.2	17	69	19	54	64	7	4	23	1.38
5939439--5939515	24	3.2	24	94	1	127	66	6	3	23	1.32
5939501--5939546	19	2.5	19	86	10	60	73	8	0	17	1.07
5942313--5942351	11	3.5	11	82	0	51	87	7	0	5	0.68
5950476--5950506	11	2.7	12	90	10	55	87	0	6	6	0.68
5950476--5950517	8	5.4	8	83	11	52	85	0	4	9	0.72
5951253--5951867	47	12.9	47	80	8	597	27	12	22	37	1.90
5951253--5951867	145	4.3	142	80	9	596	27	12	22	37	1.90
5951253--5951868	92	6.5	93	80	7	582	27	12	22	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5951730--5951901	52	3.4	51	76	7	190	26	13	20	40	1.89
5951253--5951868	192	3.2	188	81	7	577	27	12	22	37	1.90
5951589--5951901	48	6.4	50	74	11	215	27	12	20	39	1.89
5952022--5952082	7	7.9	7	75	20	50	68	6	0	24	1.13
5952023--5952089	17	4.2	17	71	19	63	68	7	0	23	1.15
5952023--5952072	6	8.5	6	76	12	50	68	6	0	26	1.13
5952022--5952089	24	2.9	24	95	2	120	69	7	0	23	1.14
5952040--5952119	7	11.4	7	70	19	51	71	8	0	20	1.12
5952019--5952119	24	4.7	20	84	11	80	71	7	0	20	1.11
5954554--5954618	31	2.1	31	88	5	96	36	7	6	49	1.57
5955589--5955663	30	2.5	30	84	2	87	45	2	8	44	1.47
5982162--5982208	14	3.5	13	80	11	58	55	0	0	44	0.99
5982463--5982522	26	2.2	28	82	5	70	53	3	0	43	1.17
5983262--5983342	17	5.1	17	78	17	102	48	0	0	51	1.00
5983888--5983921	14	2.4	15	90	9	54	41	11	2	44	1.56
5983944--5983977	16	2.1	17	88	5	52	44	0	0	55	0.99
5986961--5986998	18	2.1	19	90	9	62	2	21	0	76	0.91
5986961--5986998	12	3.2	12	85	7	51	2	21	0	76	0.91
5993919--5993949	14	2.1	15	94	5	55	29	0	0	70	0.87
5996632--5996994	181	2.0	181	95	0	645	24	28	17	29	1.97
5998975--5998999	12	2.1	12	100	0	50	84	0	16	0	0.63
5999155--5999187	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5999479--5999523	3	15.3	3	95	4	83	31	0	0	68	0.89
6007455--6007488	11	3.0	11	86	4	50	79	0	2	17	0.86
6008346--6008393	21	2.3	20	79	10	60	33	2	2	62	1.18
6011051--6011088	16	2.2	19	86	13	55	55	0	0	44	0.99
6011051--6011088	17	2.1	19	85	9	53	55	0	0	44	0.99
6011176--6011207	3	10.7	3	93	0	55	31	0	3	65	1.08
6017250--6017313	30	2.1	30	88	0	92	34	21	3	40	1.69
6021427--6021472	21	2.2	21	88	7	67	54	0	0	45	0.99
6026340--6026378	19	2.1	19	100	0	78	15	15	35	33	1.89
6027449--6027474	3	8.7	3	100	0	52	69	0	0	30	0.89
6031004--6031049	2	23.0	2	86	0	65	45	2	4	47	1.34
6032436--6032521	35	2.5	35	75	22	83	63	0	1	34	1.02
6032558--6032630	13	6.2	12	74	13	53	50	1	0	47	1.09
6032803--6032872	34	2.1	34	91	0	113	42	17	30	10	1.81
6033071--6033104	13	2.5	14	85	4	52	67	0	0	32	0.91
6033235--6033286	18	2.9	18	91	0	86	61	0	0	38	0.96
6033247--6033296	26	1.9	26	87	0	73	64	0	0	36	0.94
6033303--6033327	13	1.9	13	100	0	50	32	0	4	64	1.12
6034379--6034428	22	2.3	22	82	3	66	62	2	4	32	1.25
6034505--6034667	23	7.5	22	68	18	110	55	1	1	41	1.18
6034511--6034680	20	8.2	20	69	14	96	56	1	1	40	1.17
6034505--6034661	41	3.7	41	73	10	120	54	1	1	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6034516--6034624	31	3.6	30	73	20	93	53	0	1	44	1.17
6034608--6034676	36	2.0	34	85	5	93	60	1	1	36	1.14
6034629--6034674	23	2.0	23	86	0	65	65	0	2	32	1.05
6034670--6034797	15	8.2	16	66	23	60	49	1	1	47	1.20
6034893--6034921	14	2.0	15	93	6	51	41	3	0	55	1.17
6035120--6035249	65	2.0	65	93	0	224	20	24	25	30	1.99
6042031--6042076	17	2.8	16	83	9	56	28	0	0	71	0.86
6042200--6042252	6	7.7	7	83	12	58	47	0	0	52	1.00
6042955--6043069	42	2.7	42	79	15	105	51	0	0	46	1.13
6043032--6043069	18	2.1	19	90	5	60	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109