genome.fa.s35.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  91  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18221575--18221614	19	2.1	19	85	0	53	52	0	10	37	1.35
18224258--18224293	12	2.8	13	91	4	56	50	2	5	41	1.40
18224306--18224351	20	2.3	20	88	7	67	69	2	2	26	1.11
18225956--18225992	19	2.0	18	89	5	56	45	8	2	43	1.47
18232466--18232755	151	1.9	151	89	0	445	37	10	7	44	1.66
18233338--18233362	12	2.1	12	100	0	50	24	40	0	36	1.55
18237989--18238035	17	2.6	17	83	6	58	34	0	0	65	0.93
18238150--18238258	42	2.6	42	81	5	114	25	26	12	34	1.92
18238198--18238319	42	2.9	42	77	7	122	22	24	15	36	1.93
18239586--18239625	19	2.1	19	85	0	53	52	0	10	37	1.35
18242260--18242295	12	2.8	13	91	4	56	50	2	5	41	1.40
18242308--18242353	20	2.3	20	88	7	67	69	2	2	26	1.11
18243691--18243724	15	2.2	15	89	5	50	17	0	5	76	0.98
18243960--18243996	19	2.0	18	89	5	56	45	8	2	43	1.47
18253004--18253032	14	2.0	15	93	6	51	41	10	6	41	1.66
18253275--18253305	13	2.4	13	94	0	53	90	6	0	3	0.55
18256540--18256844	151	2.0	152	81	7	361	37	9	5	47	1.60
18266867--18267028	54	3.0	53	93	2	270	55	19	9	14	1.67
18270133--18270174	21	2.0	21	100	0	84	61	9	9	19	1.53
18271796--18271969	27	6.4	27	76	0	141	16	33	20	29	1.95
18274066--18274099	17	2.0	17	94	0	59	35	0	8	55	1.31
18274976--18275026	8	6.8	8	78	13	63	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18275012--18275061	24	2.0	25	92	3	84	52	2	0	46	1.12
18277303--18277342	16	2.6	16	84	4	55	45	12	7	35	1.70
18285629--18285673	22	2.2	19	84	11	54	55	2	0	42	1.12
18287109--18288359	629	2.0	629	88	1	1855	27	21	17	33	1.96
18289986--18290199	112	1.9	109	95	2	383	19	26	9	43	1.82
18295743--18295768	12	2.2	12	100	0	52	42	23	26	7	1.81
18298005--18298043	20	2.0	20	84	0	51	30	7	5	56	1.49
18298297--18299011	357	2.0	357	99	0	1421	28	19	25	26	1.99
18306996--18307080	40	2.1	41	79	14	97	48	2	2	47	1.27
18308227--18308269	20	2.2	20	82	0	50	69	2	0	27	1.00
18309463--18309510	21	2.3	21	89	7	71	54	6	16	22	1.65
18310725--18311675	484	2.0	480	78	7	996	52	5	10	32	1.57
18313621--18313649	2	14.5	2	100	0	58	48	0	0	51	1.00
18314899--18315022	43	2.9	43	93	0	203	57	12	14	16	1.66
18319977--18320013	19	1.9	20	88	5	58	67	2	0	29	1.04
18321662--18321729	32	2.0	35	83	13	90	38	0	2	58	1.13
18322091--18322124	17	2.0	17	88	0	50	35	0	8	55	1.31
18322616--18322687	30	2.5	30	81	4	85	40	1	1	56	1.16
18322608--18322690	28	2.9	27	77	13	78	37	1	1	60	1.12
18324407--18324452	3	15.3	3	95	0	83	32	2	32	32	1.70
18331483--18331507	9	2.8	9	100	0	50	44	0	12	44	1.41
18346817--18346855	12	3.1	13	85	14	55	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18347913--18347955	7	6.1	7	88	0	59	51	6	27	13	1.67
18347914--18347954	14	2.9	14	96	0	73	48	7	29	14	1.71
18347913--18347955	21	2.0	21	95	0	77	51	6	27	13	1.67
18355879--18355929	24	2.1	25	79	17	63	49	3	0	47	1.20
18355885--18355965	34	2.4	34	84	12	96	51	4	0	43	1.23
18356268--18356315	18	2.7	19	84	12	66	50	0	0	50	1.00
18356244--18356293	26	1.9	26	83	0	64	42	0	0	58	0.98
18356370--18356412	19	2.3	18	80	7	50	48	2	4	44	1.36
18357380--18357443	31	2.1	31	100	0	128	34	9	21	34	1.86
18367260--18367305	17	2.6	18	89	3	67	45	10	8	34	1.70
18370165--18370204	20	2.0	20	100	0	80	20	20	20	40	1.92
18377791--18377857	31	2.2	30	86	7	91	35	14	8	40	1.78
18381896--18381967	12	6.0	12	75	12	58	47	5	0	47	1.25
18382239--18382272	16	2.1	16	94	0	59	55	8	0	35	1.31
18383317--18383349	15	2.2	15	94	0	57	36	15	0	48	1.45
18384023--18384055	7	4.6	7	92	7	57	45	0	0	54	0.99
18384193--18384221	3	9.7	3	100	0	58	31	0	0	68	0.89
18385149--18385179	16	1.9	16	93	0	53	41	0	3	54	1.16
18386395--18386442	23	2.1	23	100	0	96	27	16	0	56	1.41
18387796--18387828	12	2.8	12	86	4	50	78	9	0	12	0.95
18387860--18388075	59	3.7	59	86	6	300	34	10	6	47	1.65
18387862--18388075	117	1.8	115	88	5	324	35	10	6	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18388086--18388181	32	3.1	30	77	21	92	75	2	6	16	1.11
18388095--18388188	5	18.4	5	72	20	63	75	2	6	15	1.10
18388103--18388189	27	3.2	27	72	16	72	75	1	6	16	1.07
18388211--18388269	4	14.8	4	78	7	66	72	5	1	20	1.12
18388211--18388269	16	3.7	16	82	6	75	72	5	1	20	1.12
18388818--18388842	10	2.5	10	100	0	50	60	24	0	16	1.36
18389139--18389190	21	2.5	20	84	12	61	65	5	5	23	1.36
18389309--18389387	3	26.7	3	78	7	63	70	2	2	24	1.11
18389279--18389390	12	9.6	12	68	18	67	71	2	2	23	1.12
18389611--18389785	82	2.1	83	89	3	262	36	22	15	25	1.93
18389652--18389785	41	3.2	42	94	3	245	34	23	17	24	1.96
18391031--18391095	8	8.1	8	83	10	71	3	13	0	83	0.77
18391031--18391095	32	2.0	32	85	5	87	3	13	0	83	0.77
18391031--18391085	22	2.4	23	87	6	76	3	14	0	81	0.82
18391051--18391097	14	3.5	13	86	13	60	0	10	0	89	0.49
18391050--18391098	10	4.7	10	92	7	80	0	12	0	87	0.54
18391031--18391098	20	3.1	22	87	8	86	2	14	0	82	0.79
18391050--18391097	1	48.0	1	78	0	51	0	10	0	89	0.48
18391089--18391123	17	2.2	16	90	10	54	8	14	0	77	0.99
18395045--18395201	58	2.7	58	90	1	244	35	11	7	45	1.67
18395228--18395321	6	15.7	6	70	18	54	75	1	6	17	1.06
18395233--18395309	24	3.1	24	75	15	75	75	1	6	16	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18395220--18395320	5	19.4	5	71	22	59	75	1	5	16	1.10
18395344--18395397	4	13.8	4	84	3	74	74	3	0	22	0.98
18395930--18395954	10	2.5	10	100	0	50	60	24	0	16	1.36
18396217--18396281	30	2.2	30	83	2	78	66	4	7	21	1.36
18396957--18397063	39	2.9	37	74	16	105	25	7	2	64	1.33
18400393--18400419	3	9.0	3	100	0	54	33	0	0	66	0.92
18406089--18406116	5	5.6	5	100	0	56	82	0	0	17	0.68
18429071--18429095	13	1.9	13	100	0	50	32	8	0	60	1.26
18429648--18429692	2	23.5	2	91	8	76	51	0	48	0	1.00
18431076--18431143	26	2.6	25	80	15	84	50	4	1	44	1.31
18431112--18431196	16	5.5	15	73	14	66	49	4	1	44	1.30
18431230--18431344	30	3.9	29	80	17	130	46	0	0	52	1.06
18431251--18431349	18	5.2	18	82	11	92	46	0	1	52	1.07
18431229--18431346	60	2.0	60	82	9	156	45	0	0	53	1.06
18435881--18435918	9	4.3	9	84	15	53	76	0	0	23	0.79
18435875--18435943	34	2.1	33	86	8	95	71	0	0	28	0.87
18435874--18435930	17	3.4	17	86	13	82	70	0	0	29	0.88
18444763--18444842	18	4.6	18	79	14	78	32	6	25	36	1.81
18444763--18444873	33	3.4	34	75	17	92	31	6	27	35	1.82
18444764--18444873	51	2.2	48	83	4	139	31	6	27	34	1.82
18444833--18444881	15	3.3	15	88	5	64	30	6	30	32	1.82
18445207--18445245	17	2.2	18	90	4	62	33	43	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18445204--18445245	6	7.2	6	91	5	59	33	45	0	21	1.52
18448317--18448373	27	2.3	22	76	23	60	56	8	0	35	1.31
18448430--18448473	20	2.1	22	87	8	65	56	2	0	40	1.11
18451253--18451487	121	1.9	121	81	3	285	43	7	25	22	1.79
18453047--18453417	85	4.4	85	75	7	274	23	13	20	42	1.88
18453102--18453434	85	3.9	83	76	3	290	23	13	20	42	1.87
18453484--18453537	24	2.2	24	74	6	56	9	18	35	37	1.83
18459969--18460013	22	2.0	23	83	12	58	44	2	2	51	1.26
18460117--18460171	27	1.9	30	85	10	80	50	5	3	40	1.43
18464959--18464994	18	2.0	18	100	0	72	33	11	16	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109