genome.fa.s35.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  52  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9857089--9857126	12	3.2	12	92	0	58	42	7	0	50	1.31
9857468--9857494	3	9.0	3	100	0	54	66	0	0	33	0.92
9863861--9863888	2	14.0	2	100	0	56	50	0	0	50	1.00
9864878--9864906	3	9.7	3	100	0	58	34	0	0	65	0.93
9864941--9864970	14	2.1	14	93	6	51	30	6	0	63	1.20
9879129--9879175	24	2.0	24	87	8	69	48	4	4	42	1.42
9887370--9887399	15	1.9	16	93	6	53	56	0	0	43	0.99
9887497--9887523	14	1.9	14	100	0	54	74	0	7	18	1.05
9896603--9896628	2	13.0	2	100	0	52	50	0	0	50	1.00
9899025--9899055	2	15.5	2	100	0	62	0	48	0	51	1.00
9902741--9902776	2	18.0	2	100	0	72	50	0	0	50	1.00
9910825--9910861	2	18.5	2	100	0	74	48	0	51	0	1.00
9919968--9919998	11	2.8	11	90	0	53	35	0	12	51	1.40
9920033--9920177	52	2.8	52	83	0	182	44	6	20	29	1.75
9920770--9920839	24	3.0	22	79	14	70	37	8	35	18	1.82
9920747--9920839	46	2.0	47	83	6	118	36	8	35	19	1.82
9920796--9920861	25	2.7	25	90	2	98	36	6	34	22	1.79
9921154--9921257	51	2.0	51	81	5	120	44	7	19	28	1.78
9925694--9925729	2	18.0	2	94	0	63	52	0	0	47	1.00
9928794--9928835	22	1.9	22	95	0	75	28	11	14	45	1.80
9929217--9929251	18	1.9	18	88	0	52	22	14	25	37	1.92
9932669--9932710	22	1.9	22	90	0	66	26	11	16	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9950265--9950304	20	2.0	20	95	0	71	37	17	25	20	1.94
9952457--9952486	2	15.0	2	100	0	60	0	0	50	50	1.00
9952469--9952723	129	2.0	129	98	0	492	25	14	27	32	1.95
9964138--9964180	19	2.3	19	84	8	52	48	9	0	41	1.35
9964846--9964888	21	2.0	22	86	13	63	30	0	13	55	1.39
9965219--9965283	28	2.3	28	100	0	130	56	3	3	36	1.30
9965329--9965364	11	3.2	11	84	7	54	25	0	0	75	0.81
9972097--9972142	17	2.7	17	83	12	67	36	0	0	63	0.95
9973711--9973735	10	2.5	10	100	0	50	40	12	16	32	1.84
9983803--9983827	2	12.5	2	100	0	50	52	0	0	48	1.00
9985704--9985746	18	2.4	18	76	0	50	48	4	0	46	1.22
9986231--9986255	5	5.0	5	100	0	50	20	60	20	0	1.37
9986575--9986639	23	2.9	22	82	17	64	50	0	0	49	1.00
9986558--9986632	23	2.9	27	69	15	68	50	0	0	49	1.00
9993139--9993206	33	2.1	33	97	0	127	44	22	14	19	1.86
10000448--10000529	41	2.0	41	95	4	148	37	19	19	23	1.94
10007708--10007770	31	2.0	31	93	0	108	52	19	9	19	1.72
10017001--10017059	24	2.4	26	77	13	70	38	1	0	59	1.08
10025513--10025583	11	6.7	11	73	9	67	39	0	4	56	1.19
10025607--10025653	15	2.8	18	75	18	55	46	0	10	42	1.38
10025593--10025669	33	2.3	33	86	0	100	40	1	12	45	1.51
10036573--10036610	19	2.1	18	90	5	58	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10042610--10042687	27	2.8	29	76	9	99	34	19	8	37	1.83
10044560--10044597	16	2.4	16	100	0	76	42	18	0	39	1.50
10047785--10047823	2	19.5	2	100	0	78	0	48	0	51	1.00
10053105--10053129	12	2.1	12	100	0	50	36	0	0	64	0.94
10060695--10060719	2	12.5	2	100	0	50	52	0	48	0	1.00
10061386--10061432	22	2.1	23	84	4	60	44	2	0	53	1.12
10073785--10073812	2	14.0	2	100	0	56	50	0	0	50	1.00
10077216--10077294	27	2.9	27	83	5	97	35	18	10	35	1.85
10088487--10088518	2	16.0	2	100	0	64	50	0	50	0	1.00
10090908--10091907	371	2.7	368	90	2	1563	27	24	29	18	1.98
10099430--10099508	41	1.9	41	80	14	92	41	5	1	51	1.31
10100028--10100058	2	15.5	2	93	0	53	48	0	3	48	1.17
10100856--10100882	3	9.0	3	100	0	54	33	33	0	33	1.58
10104056--10104110	18	2.8	20	75	16	51	36	1	0	61	1.06
10109759--10109792	18	1.9	18	88	5	52	35	0	0	64	0.94
10109977--10110027	23	2.2	24	85	3	68	58	0	0	41	0.98
10109977--10110050	23	3.2	24	81	9	64	56	1	0	41	1.07
10110022--10110058	19	1.9	19	88	0	56	54	2	0	43	1.14
10110010--10110052	23	1.9	22	90	4	68	58	2	0	39	1.11
10116072--10116097	3	8.7	3	100	0	52	30	0	0	69	0.89
10120742--10120783	17	2.5	17	84	3	50	26	0	4	69	1.08
10138897--10138928	12	2.7	12	95	0	55	6	56	9	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10139823--10139875	27	2.0	26	85	10	72	33	16	0	49	1.47
10141548--10141588	20	2.0	20	85	9	55	7	4	7	80	1.02
10142844--10142886	19	2.3	19	84	8	52	44	0	0	55	0.99
10146321--10146396	38	2.0	38	97	0	143	38	28	11	21	1.89
10151684--10151721	12	3.2	12	81	11	51	55	0	0	44	0.99
10154764--10154792	2	14.5	2	100	0	58	51	0	0	48	1.00
10158155--10158197	22	2.0	22	95	0	77	32	11	11	44	1.77
10158360--10158445	23	3.7	23	85	3	109	17	23	18	40	1.91
10162087--10162130	22	2.0	22	95	0	79	31	11	13	43	1.80
10162996--10163205	104	2.0	104	95	0	375	38	15	18	27	1.91
10167075--10167122	6	8.0	6	85	0	60	25	0	6	68	1.12
10167073--10167153	30	2.6	32	80	7	103	24	0	8	66	1.19
10169778--10169814	16	2.3	16	95	0	65	37	2	18	40	1.65
10170764--10170815	19	2.8	18	85	8	68	40	11	5	42	1.65
10170863--10170889	13	2.1	13	100	0	54	22	7	14	55	1.64
10170870--10170910	20	2.0	21	90	4	66	29	4	9	56	1.53
10170863--10170949	32	2.6	34	87	5	117	29	4	16	49	1.65
10170944--10170993	19	2.6	19	84	12	66	28	6	16	50	1.68
10172187--10172227	22	1.9	22	95	5	75	19	2	7	70	1.22
10173517--10173555	18	2.2	18	86	9	53	48	5	2	43	1.38
10173565--10173604	22	1.9	20	85	10	53	50	5	0	45	1.23
10176330--10176375	23	2.0	23	83	8	58	19	4	4	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10176384--10176425	14	2.9	15	86	6	52	28	0	7	64	1.20
10176429--10176470	14	3.1	14	76	10	52	35	0	4	59	1.19
10179703--10179729	1	27.0	1	100	0	54	0	100	0	0	0.00
10184117--10184149	2	16.5	2	100	0	66	48	0	0	51	1.00
10185104--10185145	16	2.5	17	84	7	59	40	7	2	50	1.43
10186039--10186075	2	18.5	2	100	0	74	0	48	0	51	1.00
10186075--10186099	2	12.5	2	100	0	50	48	0	0	52	1.00
10187470--10187511	12	3.5	12	81	12	50	19	0	4	76	0.96
10187469--10187515	24	2.0	23	87	4	67	19	0	6	74	1.03
10191544--10191577	13	2.6	14	86	13	54	0	20	8	70	1.13
10192428--10192605	91	2.0	90	87	3	259	39	5	15	39	1.70
10192531--10192585	27	2.1	26	83	10	67	49	0	14	36	1.44
10192692--10192818	62	2.0	62	81	3	148	40	10	8	40	1.70
10193798--10193864	33	2.0	33	97	0	125	40	7	23	28	1.82
10194481--10194520	14	2.6	16	84	11	57	42	2	0	55	1.13
10194481--10194530	16	3.3	15	81	13	57	42	2	2	54	1.23
10198931--10198955	7	3.6	7	100	0	50	64	0	0	36	0.94
10199227--10199252	2	13.0	2	100	0	52	50	0	0	50	1.00
10204714--10204750	14	2.6	14	86	0	56	62	0	5	32	1.18
10204990--10205139	74	2.0	74	94	0	264	22	28	8	42	1.81
10219803--10219841	17	2.4	17	95	4	71	10	0	0	89	0.48
10219804--10219839	10	3.6	10	92	7	56	8	0	0	91	0.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10224154--10224217	30	2.3	27	89	10	101	56	0	4	39	1.20
10226585--10226628	13	3.2	13	76	17	52	18	15	9	56	1.65
10228660--10228704	23	1.9	23	86	13	65	35	2	4	57	1.31
10233766--10233799	9	3.7	9	88	4	50	35	0	0	64	0.94
10233771--10233813	21	2.0	21	86	0	59	44	0	0	55	0.99
10240035--10240098	33	1.9	33	100	0	128	31	9	20	39	1.84
10243223--10243256	16	2.3	14	90	10	50	23	0	2	73	0.97
10243412--10243446	7	5.0	7	86	13	54	57	0	0	42	0.99
10243803--10243827	13	1.9	13	100	0	50	64	0	0	36	0.94
10245273--10245328	28	2.0	27	86	3	76	42	5	0	51	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109