genome.fa.s35.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  58  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11508929--11508973	19	2.4	19	82	10	56	46	0	8	44	1.34
11516401--11516455	23	2.4	23	88	8	78	18	3	32	45	1.67
11516581--11516627	18	2.7	18	80	3	51	25	2	34	38	1.68
11516618--11516695	20	3.9	20	73	9	70	17	1	29	51	1.54
11516699--11516729	14	2.2	14	100	0	62	38	0	19	41	1.51
11516710--11516761	26	2.0	26	84	0	68	21	3	28	46	1.69
11516792--11516830	20	2.0	20	84	0	51	15	5	30	48	1.66
11516799--11517065	20	13.5	20	69	14	135	17	4	26	50	1.66
11516819--11516915	42	2.3	41	82	5	115	19	4	26	49	1.66
11516888--11516965	41	1.9	41	87	10	115	17	5	28	48	1.68
11516923--11516997	33	2.3	33	86	6	100	14	5	26	53	1.62
11516902--11517010	53	2.1	53	86	6	150	15	5	27	51	1.65
11516956--11517030	39	1.9	39	94	0	132	13	5	28	53	1.61
11517540--11517572	7	4.7	7	96	0	57	69	12	3	15	1.30
11519001--11519071	22	3.1	23	78	8	74	78	8	2	9	1.05
11519001--11519079	11	7.4	10	75	13	61	79	8	2	8	1.01
11519001--11519071	12	6.1	12	71	15	51	78	8	2	9	1.05
11519001--11519080	20	3.8	19	80	18	72	80	8	2	8	1.01
11519019--11519080	10	5.8	10	77	11	61	82	8	3	6	0.94
11520502--11520585	15	5.4	15	77	11	80	50	21	0	28	1.49
11520519--11520585	31	2.2	30	86	7	91	50	19	0	29	1.48
11524278--11524322	18	2.4	19	81	7	56	66	2	4	26	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11524688--11524773	19	4.3	19	68	18	59	50	2	0	47	1.14
11524771--11524829	4	14.2	4	75	19	50	50	0	0	49	1.00
11524762--11524829	12	5.5	13	75	13	63	52	0	0	47	1.00
11525784--11525829	18	2.6	18	82	6	58	28	2	0	69	1.00
11525851--11525907	20	2.6	21	83	10	62	54	0	0	45	0.99
11526041--11526080	13	3.1	13	85	0	62	52	0	2	45	1.14
11526115--11526158	19	2.2	20	88	4	63	31	2	0	65	1.05
11526115--11526160	10	4.7	10	81	5	58	34	2	0	63	1.07
11526177--11526228	20	2.5	22	81	6	63	51	0	0	48	1.00
11526177--11526229	11	4.9	11	86	11	65	52	0	0	47	1.00
11526254--11526291	20	1.9	20	88	0	58	55	2	0	42	1.14
11526290--11526326	19	1.9	19	88	0	56	64	0	2	32	1.07
11528202--11528272	35	2.0	36	97	2	135	43	5	11	39	1.64
11533525--11533554	2	15.0	2	92	0	51	53	0	0	46	1.00
11534113--11534148	17	2.1	17	94	0	63	38	5	8	47	1.57
11536641--11536678	20	1.9	20	94	0	67	50	5	15	28	1.66
11543581--11543623	22	1.9	23	85	4	61	44	6	6	41	1.58
11546458--11546512	23	2.4	23	93	0	92	36	1	1	60	1.18
11549589--11549613	2	12.5	2	100	0	50	0	48	0	52	1.00
11549613--11549656	2	22.0	2	100	0	88	50	0	0	50	1.00
11554803--11554988	93	2.0	93	97	0	354	31	25	25	18	1.98
11556361--11556398	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11566690--11566727	18	2.1	18	85	9	51	55	0	0	44	0.99
11566692--11566735	21	2.2	20	84	12	54	61	0	2	36	1.09
11568544--11568599	23	2.4	23	90	0	85	35	1	3	58	1.26
11570489--11570582	44	2.2	44	98	1	181	31	19	22	26	1.97
11571585--11571609	1	25.0	1	100	0	50	100	0	0	0	0.00
11571711--11571737	2	13.5	2	100	0	54	0	48	0	51	1.00
11571737--11571764	2	14.0	2	100	0	56	50	0	0	50	1.00
11578428--11578461	3	11.7	3	93	6	61	64	0	0	35	0.94
11578427--11578461	17	2.1	17	100	0	70	62	0	0	37	0.95
11578431--11578459	14	2.1	14	100	0	58	65	0	0	34	0.93
11579182--11579245	32	2.0	31	87	3	92	28	7	14	50	1.70
11579369--11579393	2	12.5	2	100	0	50	48	0	0	52	1.00
11579778--11579835	23	2.6	23	75	5	57	58	6	5	29	1.46
11579933--11579969	14	2.4	16	91	8	60	54	2	0	43	1.14
11581873--11581928	19	3.0	18	85	12	69	35	1	25	37	1.66
11583875--11583974	48	2.1	48	84	0	128	55	7	11	27	1.60
11593698--11594050	43	8.3	43	77	9	296	24	12	17	45	1.83
11593750--11594125	83	4.5	83	85	2	364	24	12	16	46	1.82
11593921--11594068	39	3.7	40	78	9	165	26	13	13	46	1.80
11595794--11595854	32	2.0	30	87	12	90	27	8	16	47	1.75
11600459--11600558	48	2.1	48	83	7	123	54	7	12	27	1.63
11603430--11603455	10	2.6	10	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11610274--11611060	43	18.7	43	76	10	513	25	12	16	45	1.83
11610326--11611130	83	9.6	83	83	4	744	25	13	16	44	1.83
11610368--11611131	43	18.1	44	76	10	515	25	12	16	45	1.83
11611455--11611499	19	2.4	19	88	0	63	33	4	26	35	1.77
11612435--11612459	12	2.1	12	100	0	50	60	0	0	40	0.97
11612815--11612912	46	2.2	45	88	5	144	59	5	10	25	1.51
11618125--11618347	123	1.8	122	84	4	306	38	10	11	39	1.76
11624641--11624733	36	2.6	36	84	3	125	24	31	18	25	1.98
11626719--11626768	15	3.3	15	77	0	55	36	0	0	64	0.94
11626722--11626781	30	2.0	30	83	0	75	41	0	1	56	1.09
11629367--11629449	42	2.0	42	97	0	157	48	8	18	25	1.76
11636204--11636327	65	1.9	65	98	0	239	45	19	14	20	1.85
11637938--11638335	208	1.9	208	94	0	697	38	23	15	22	1.92
11641032--11641070	2	19.5	2	100	0	78	51	0	0	48	1.00
11642884--11642920	3	12.3	3	100	0	74	64	0	0	35	0.94
11645236--11645269	9	3.8	9	96	0	59	35	17	14	32	1.91
11647089--11647120	6	5.2	6	96	3	55	68	0	0	31	0.90
11652225--11652321	40	2.5	39	82	1	104	38	7	14	40	1.74
11652988--11653038	26	2.0	26	84	0	66	35	19	0	45	1.51
11653995--11654032	13	3.0	13	82	17	53	52	0	0	47	1.00
11657536--11657564	13	2.1	14	93	6	51	41	0	0	58	0.98
11657897--11657955	28	2.1	29	84	12	79	30	1	5	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11660908--11660980	4	17.8	4	74	20	62	73	2	4	19	1.11
11660896--11660990	9	10.7	9	69	22	58	71	2	4	22	1.14
11660907--11660989	33	2.5	32	83	13	105	73	2	4	19	1.12
11660896--11660990	28	3.2	28	76	13	75	71	2	4	22	1.14
11663100--11663210	58	1.9	59	88	1	170	58	5	9	27	1.50
11663323--11663383	32	1.9	32	83	12	81	39	0	9	50	1.35
11676641--11676696	25	2.3	24	87	6	85	33	1	7	57	1.37
11677641--11677689	20	2.5	20	76	6	55	44	4	4	46	1.41
11678747--11678790	23	1.9	23	85	0	61	6	4	22	65	1.35
11679990--11680058	33	2.1	33	81	5	77	46	10	11	31	1.74
11680237--11680318	41	2.0	42	85	7	114	42	19	8	29	1.81
11680322--11680419	41	2.3	43	81	6	112	40	17	11	30	1.84
11684759--11685137	211	1.8	210	82	6	498	36	13	7	43	1.72
11686316--11686378	10	6.4	10	75	14	51	14	1	9	74	1.13
11686538--11686792	97	2.7	91	81	4	260	34	20	14	30	1.92
11686572--11687297	102	7.4	98	78	9	665	35	22	13	28	1.92
11686520--11687297	48	16.0	47	78	10	635	35	22	13	28	1.92
11686571--11687289	152	4.9	146	81	7	727	36	22	13	27	1.92
11697827--11697873	25	1.9	24	87	12	69	12	0	14	72	1.13
11699060--11699105	12	3.9	12	80	11	51	39	0	0	60	0.97
11699470--11699525	16	3.4	16	74	11	51	28	0	3	67	1.07
11700542--11700590	24	2.0	24	84	0	62	16	2	61	20	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11700628--11700661	14	2.5	13	86	9	50	5	5	2	85	0.83
11700626--11700669	12	3.5	12	82	11	52	9	4	6	79	1.04
11705575--11705619	20	2.2	20	92	0	72	35	8	6	48	1.61
11705644--11705909	24	10.8	24	75	13	229	33	3	9	54	1.49
11705650--11705765	56	2.1	57	83	4	146	31	3	12	53	1.54
11705705--11705913	71	2.9	70	85	5	278	33	2	9	55	1.45
11705744--11705909	47	3.5	47	77	13	171	34	2	8	54	1.44
11705987--11706067	35	2.3	35	89	0	126	25	8	11	54	1.64
11706042--11706103	22	2.7	22	95	5	106	25	4	14	54	1.60
11706327--11707516	597	2.0	589	83	5	1513	26	11	24	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109