genome.fa.s35.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  80  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153536--16153600	32	2.0	33	85	8	89	38	6	3	52	1.42
16155289--16155323	17	2.1	17	94	0	61	51	11	8	28	1.67
16155446--16155508	30	2.1	30	93	0	108	28	23	9	38	1.86
16155857--16155886	5	6.0	5	96	0	51	80	3	0	16	0.85
16156260--16156309	19	2.6	18	78	12	55	74	0	16	10	1.08
16156267--16156324	27	2.2	26	84	3	71	77	0	13	8	0.98
16156804--16156920	62	1.9	62	85	7	166	38	14	12	34	1.84
16156885--16156946	26	2.4	26	100	0	124	38	14	8	38	1.76
16158034--16158209	86	2.0	88	93	2	302	50	3	11	33	1.58
16160188--16160252	22	2.8	22	79	6	58	50	4	0	44	1.22
16166993--16167026	17	2.0	17	100	0	68	47	0	11	41	1.40
16174651--16174683	7	4.7	7	100	0	66	57	0	0	42	0.98
16179663--16179728	30	2.2	30	86	5	89	66	4	18	10	1.38
16179930--16179981	27	1.9	27	88	7	79	30	9	17	42	1.81
16179926--16180034	56	1.9	56	81	3	130	31	12	16	39	1.86
16180243--16180380	3	44.7	3	82	15	158	28	0	1	68	1.03
16180558--16180609	25	2.1	25	82	13	63	71	9	15	3	1.27
16181287--16181440	58	2.6	57	84	8	193	46	5	13	34	1.66
16181287--16181442	57	2.6	61	85	7	205	46	5	13	35	1.65
16181580--16181612	14	2.3	15	89	5	50	9	9	0	81	0.87
16184738--16184768	15	2.1	15	93	0	53	19	22	6	51	1.69
16193041--16193498	43	10.5	43	80	2	441	23	13	18	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16193058--16193498	130	3.4	129	84	4	528	23	13	19	44	1.85
16193041--16193498	173	2.6	172	83	3	533	23	13	18	43	1.86
16193041--16193498	87	5.3	86	82	4	445	23	13	18	43	1.86
16193681--16193785	3	34.7	3	78	16	101	26	2	1	68	1.14
16193997--16194030	11	3.2	11	83	8	52	82	0	8	8	0.85
16194001--16194035	12	3.0	12	87	8	54	82	2	8	5	0.91
16195551--16195709	81	2.0	80	82	3	194	33	8	16	41	1.78
16198239--16198294	24	2.3	23	79	14	60	51	25	1	21	1.57
16198332--16198434	53	1.9	53	82	7	129	47	30	2	19	1.64
16200726--16200770	18	2.4	19	88	3	65	42	33	0	24	1.55
16200973--16201064	41	2.2	40	84	5	121	40	22	13	23	1.89
16201317--16201370	22	2.5	22	81	3	65	29	20	11	38	1.87
16201519--16201687	21	7.7	22	81	7	177	36	14	10	37	1.81
16201540--16201758	92	2.4	91	83	6	273	35	12	11	40	1.79
16201519--16201763	67	3.6	66	78	10	203	35	12	11	40	1.80
16201672--16201733	25	2.5	25	89	0	88	32	6	14	46	1.70
16201565--16201763	71	2.9	67	81	6	184	33	11	12	42	1.79
16202126--16202257	62	2.1	62	82	1	156	28	24	9	37	1.87
16202098--16202257	63	2.6	63	80	1	178	28	24	10	36	1.89
16206650--16206677	14	2.0	14	100	0	56	7	7	0	85	0.73
16207157--16207194	16	2.4	15	87	12	58	15	2	0	81	0.80
16207968--16208021	19	2.8	20	72	13	58	59	14	0	25	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16208393--16208438	23	2.0	23	82	0	56	32	4	15	47	1.65
16208713--16208745	18	1.9	18	88	11	52	42	3	0	54	1.15
16211514--16211562	17	2.6	20	75	15	59	26	12	10	51	1.71
16214988--16215021	15	2.2	16	89	5	52	50	0	0	50	1.00
16215985--16216026	22	2.0	21	85	4	57	54	4	4	35	1.42
16216258--16216308	23	2.1	25	82	13	63	39	1	0	58	1.09
16216728--16216774	17	2.7	17	86	3	67	55	2	2	40	1.24
16216717--16216809	21	4.6	20	72	20	77	53	1	2	43	1.19
16216873--16216917	18	2.4	18	85	10	56	44	0	0	55	0.99
16216938--16217004	25	2.6	26	81	9	84	50	4	0	44	1.22
16216938--16216989	26	2.0	25	88	3	77	51	5	0	42	1.25
16224383--16224424	17	2.4	18	76	8	50	33	2	2	61	1.21
16226539--16226575	17	2.1	18	85	14	51	13	37	8	40	1.74
16228219--16228619	213	1.9	213	85	5	567	35	12	24	26	1.92
16235525--16235569	21	2.2	20	84	4	54	31	33	13	22	1.92
16242050--16242075	2	13.0	2	100	0	52	50	0	0	50	1.00
16242897--16242954	7	8.3	7	84	0	62	36	10	20	32	1.87
16242887--16242954	21	3.3	21	81	2	75	35	10	22	32	1.88
16243405--16243500	49	2.0	49	87	0	138	19	13	32	34	1.91
16244124--16244157	12	2.8	12	90	0	50	58	2	38	0	1.13
16251624--16251653	2	15.0	2	100	0	60	50	0	0	50	1.00
16251809--16251840	2	16.0	2	93	0	55	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16251840--16251870	2	15.5	2	100	0	62	48	0	0	51	1.00
16253000--16253042	19	2.3	19	83	0	50	81	4	6	6	0.98
16254253--16254303	3	16.3	3	78	15	50	66	3	1	27	1.20
16254265--16254309	21	2.1	21	84	8	56	71	4	2	22	1.15
16254422--16254456	3	11.7	3	100	0	70	68	0	0	31	0.90
16254593--16254718	30	4.2	31	75	16	111	50	33	0	16	1.46
16254597--16254657	29	2.1	30	93	3	106	45	39	0	14	1.45
16254638--16254747	7	14.7	7	68	19	62	55	26	0	18	1.43
16254631--16254733	22	4.9	22	70	20	85	53	29	0	17	1.44
16254615--16254677	14	4.3	15	72	22	53	52	33	0	14	1.42
16254645--16254746	15	6.7	15	74	14	77	55	26	0	17	1.42
16254631--16254755	61	2.0	61	93	0	214	55	26	0	18	1.43
16254675--16254747	22	3.2	22	74	18	69	56	23	0	20	1.43
16254660--16254755	15	6.3	15	75	12	88	57	22	0	19	1.41
16258257--16258300	18	2.4	18	96	0	79	34	13	20	31	1.92
16261841--16261869	11	2.7	11	94	5	51	86	0	6	6	0.72
16263546--16263706	7	20.6	8	69	18	56	47	29	1	21	1.58
16263569--16263624	16	3.5	16	76	9	60	44	30	3	21	1.69
16263549--16263713	32	5.4	30	70	14	104	47	29	1	21	1.58
16263556--16263702	15	9.4	16	71	16	87	46	29	1	22	1.60
16266234--16266300	22	3.0	22	77	14	66	31	23	14	29	1.95
16266292--16266478	89	2.1	88	81	3	214	20	16	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16266469--16266522	22	2.5	22	84	0	72	29	12	12	44	1.80
16266159--16266559	221	1.8	222	80	3	486	23	16	15	43	1.87
16266589--16266661	22	3.4	22	92	1	112	34	17	15	32	1.91
16266589--16266672	43	1.9	44	82	2	107	35	19	14	30	1.91
16266842--16266893	22	2.4	22	83	0	68	28	21	19	30	1.97
16266250--16266949	374	1.9	375	78	4	786	23	17	16	42	1.88
16270757--16270783	13	2.1	13	100	0	54	70	14	7	7	1.32
16274857--16274890	2	17.0	2	100	0	68	50	0	0	50	1.00
16279783--16279809	2	13.5	2	100	0	54	48	0	0	51	1.00
16282317--16282358	17	2.5	17	80	3	50	40	0	0	59	0.97
16282931--16283193	132	2.0	133	97	0	501	41	4	9	44	1.57
16283486--16283562	31	2.5	31	81	10	86	42	5	15	36	1.69
16284186--16284338	73	2.1	74	84	7	197	43	2	20	33	1.66
16284455--16284608	75	2.1	75	84	8	201	42	1	20	34	1.64
16288141--16288214	38	2.0	38	97	2	141	33	2	13	50	1.56
16290271--16290385	24	4.7	24	73	8	97	45	6	13	35	1.68
16290293--16290388	51	1.9	50	84	2	129	48	5	11	34	1.61
16293938--16294209	53	5.2	53	70	8	162	40	9	6	43	1.64
16294162--16294263	54	1.9	54	85	2	143	40	11	3	44	1.60
16306403--16306449	22	2.0	24	88	8	71	38	10	4	46	1.58
16309769--16309820	27	1.9	27	84	7	70	26	23	13	36	1.92
16311331--16311364	16	2.1	16	100	0	68	32	11	14	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16315343--16315372	15	2.0	15	93	0	51	23	0	23	53	1.46
16316728--16316787	12	4.8	12	80	15	50	1	21	0	76	0.87
16317008--16317061	21	2.5	22	77	17	67	25	1	0	72	0.95
16317021--16317060	19	2.0	21	85	9	57	27	2	0	70	1.01
16317056--16317107	22	2.3	22	78	12	52	50	1	1	46	1.23
16320424--16320455	13	2.5	13	100	0	64	28	0	6	65	1.16
16320560--16320586	11	2.5	11	100	0	54	48	0	0	51	1.00
16322188--16322285	28	3.7	28	69	21	68	25	20	6	47	1.73
16331645--16331705	10	6.2	10	75	11	63	83	0	11	4	0.79
16331647--16331702	9	5.9	9	82	12	58	85	0	8	5	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109